Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016370

Physical Location & Seq

Genomic Coordinates Reverse (-)

4493527 .. 4494258

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G062800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCAGCAGAACCCAACAATTCAGAATTAGCTCAAAGCTCCAGCAACTCATCTTCATCATCTAGGTTGTTGCAAACTCATCCCACTTCACCCTCAAACTCACTCAAGACCAAGACCAAAACACACAAAGCTTCCTCACAGCATCAGCAGCAACACCAAGTAGCACTCAAAAGAAAGAGAGACGATAACAGCAGCAGCAAACACCCAGTTTACCGAGGAGTTCGCATGCGCAGTTGGGGCAAATGGGTGTCAGAAATTCGCGAACCTCGCAAGAAGTCACGCATCTGGCTCGGCACATTTTCAACTCCAGATATGGCGGCCCGTGCGCATGACGTGGCTGCCCTCAGCATTAAGGGCAACTCGGCCATTCTGAATTTCCCAGAACTAGCAGAGTTGTTGCCCCGACCGGCGTCCCGGAAGCCTCAGGACATTCAGGCTGCCGCGACTAAAGCGGCAGCCATGGTTCATTTAACTTCCACGTCATCATCCTCATCATCATCCTCCTCCTCGTCTTCGTCATTATTGGTGTCACAGTCAGAGGGTTCAGAATCAGAGGAGCTTGGGGAGATTGTGGAGTTACCCAACATAGAGGGCAGTTTCGACTCGCCCGAGTCGAGGAACGAGTTCATATTGGTGAATGACTCGGAGGATGGGTGGGTGTATCCATCAATGGGGCTTGAGGGGGTCGAATTTAATTTGTGGGGTTTTTTCTCATCGGATATTGGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

244

Amino Acids

26.44

Weight (kDa)

6.67

Isoelectric Point (pI)

71.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016370)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32030
malus_domestica	MD09G1206700.v1.1 MD17G1187300.v1.1
prunus_persica	Prupe.3G062800_v2.0.a1
pyrus_communis	pycom09g12310 pycom17g19630
rosa_chinensis	RchiOBHm_Chr2g0139661
rosa_laevigata	RLG00000019824
rosa_multiflora	Rmu_sc0009449.1_g000010 Rmu_sc0011630.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105300
rosa_rugosa	Rorug02G0358900
rosa_samantha	Rh2AG408900 Rh2CG394800
rosa_wichuraiana	Rw2G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	230, 327
AccII	CGCG	2 cut(s)	261, 443
AciI	CCGC	3 cut(s)	317, 441, 452
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	3 cut(s)	255, 373, 689
AcyI	GRCGYC	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	615, 671
AgsI	TTSAA	1 cut(s)	303
AjiI	CACGTC	2 cut(s)	334, 480
AluBI	AGCT	5 cut(s)	32, 39, 131, 559, 729
AluI	AGCT	5 cut(s)	32, 39, 131, 559, 729
Alw26I	GTCTC	1 cut(s)	174
Ama87I	CYCGRG	1 cut(s)	608
AoxI	GGCC	2 cut(s)	318, 363
ApeKI	GCWGC	8 cut(s)	5, 148, 192, 195, 338, 437, 455, 726
ApoI	RAATTY	3 cut(s)	255, 373, 689
Asp700I	GAANNNNTTC	1 cut(s)	623
AspLEI	GCGC	2 cut(s)	231, 328
AspS9I	GGNCC	1 cut(s)	319
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	81, 646
AvaI	CYCGRG	1 cut(s)	608
AxyI	CCTNAGG	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	504
BbvCI	CCTCAGC	1 cut(s)	344
BbvI	GCAGC	7 cut(s)	17, 160, 204, 207, 325, 424, 467
BccI	CCATC	2 cut(s)	644, 673
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciVI	GTATCC	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	63, 386
BfuI	GTATCC	1 cut(s)	672
Bme1390I	CCNGG	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	608
BmgBI	CACGTC	2 cut(s)	334, 480
BmgT120I	GGNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	415
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	151, 291
BmuI	ACTGGG	1 cut(s)	200
BoxI	GACNNNNGTC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	2 cut(s)	25, 291
Bpu10I	CCTNAGC	1 cut(s)	344
BpuEI	CTTGAG	2 cut(s)	89, 698
BpuMI	CCSGG	1 cut(s)	415
BsaHI	GRCGYC	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	214, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	2 cut(s)	615, 671
Bse118I	RCCGGY	1 cut(s)	406
Bse1I	ACTGG	1 cut(s)	206
Bse21I	CCTNAGG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	214, 459
BseGI	GGATG	4 cut(s)	79, 485, 497, 655
BseLI	CCNNNNNNNGG	2 cut(s)	615, 671
BseMII	CTCAG	2 cut(s)	358, 437
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	4 cut(s)	231, 493, 496, 569
BseXI	GCAGC	7 cut(s)	17, 160, 204, 207, 325, 424, 467
Bsh1236I	CGCG	2 cut(s)	261, 443
Bsh1285I	CGRYCG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	320, 365
BsiEI	CGRYCG	1 cut(s)	407
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	2 cut(s)	407, 415
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	2 cut(s)	615, 671
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	320, 365
BsoBI	CYCGRG	1 cut(s)	608
Bsp19I	CCATGG	1 cut(s)	459
Bsp68I	TCGCGA	1 cut(s)	261
BspACI	CCGC	3 cut(s)	317, 441, 452
BspANI	GGCC	2 cut(s)	320, 365
BspCNI	CTCAG	2 cut(s)	357, 436
BspFNI	CGCG	2 cut(s)	261, 443
BsrFI	RCCGGY	1 cut(s)	406
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	406
BssECI	CCNNGG	2 cut(s)	214, 459
BssNI	GRCGYC	1 cut(s)	410
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	534
BstACI	GRCGYC	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	2 cut(s)	344, 423
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	4 cut(s)	79, 485, 497, 655
BstFNI	CGCG	2 cut(s)	261, 443
BstHHI	GCGC	2 cut(s)	231, 328
BstMAI	GTCTC	1 cut(s)	174
BstMCI	CGRYCG	1 cut(s)	407
BstMWI	GCNNNNNNNGC	6 cut(s)	148, 237, 267, 323, 354, 449
BstNSI	RCATGY	1 cut(s)	229
BstPAI	GACNNNNGTC	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	413
BstUI	CGCG	2 cut(s)	261, 443
BstV1I	GCAGC	7 cut(s)	17, 160, 204, 207, 325, 424, 467
BstV2I	GAAGAC	1 cut(s)	504
Bsu36I	CCTNAGG	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	672
BsuRI	GGCC	2 cut(s)	320, 365
BtgI	CCRYGG	1 cut(s)	459
BtrI	CACGTC	2 cut(s)	334, 480
BtsCI	GGATG	4 cut(s)	79, 485, 497, 655
BtuMI	TCGCGA	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	227
CfoI	GCGC	2 cut(s)	231, 328
Cfr10I	RCCGGY	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	1 cut(s)	399
CviAII	CATG	3 cut(s)	226, 329, 460
DdeI	CTNAG	2 cut(s)	344, 423
EaeI	YGGCCR	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	459
Eco81I	CCTNAGG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	3 cut(s)	229, 332, 463
FaiI	YATR	6 cut(s)	227, 314, 330, 461, 587, 629
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	3 cut(s)	225, 328, 459
FokI	GGATG	4 cut(s)	66, 472, 484, 662
FspAI	RTGCGCAY	1 cut(s)	327
FspBI	CTAG	2 cut(s)	63, 386
FspI	TGCGCA	2 cut(s)	230, 327
GlaI	GCGC	2 cut(s)	230, 327
GsuI	CTGGAG	2 cut(s)	25, 291
HaeIII	GGCC	2 cut(s)	320, 365
HapII	CCGG	2 cut(s)	407, 415
HgaI	GACGC	1 cut(s)	399
HhaI	GCGC	2 cut(s)	231, 328
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	3 cut(s)	229, 332, 463
Hin6I	GCGC	2 cut(s)	229, 326
HinP1I	GCGC	2 cut(s)	229, 326
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	4 cut(s)	548, 602, 611, 641
HpaII	CCGG	2 cut(s)	407, 415
HphI	GGTGA	2 cut(s)	81, 646
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	8 cut(s)	25, 253, 372, 538, 547, 553, 646, 718
Hpy188III	TCNNGA	4 cut(s)	106, 260, 308, 425
Hpy8I	GTNNAC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	534
HpyCH4IV	ACGT	2 cut(s)	333, 479
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	6 cut(s)	148, 237, 267, 323, 354, 449
HpyF3I	CTNAG	2 cut(s)	344, 423
HpySE526I	ACGT	2 cut(s)	333, 479
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	3 cut(s)	229, 332, 463
HspAI	GCGC	2 cut(s)	229, 326
LmnI	GCTCC	2 cut(s)	44, 556
LpnPI	CCDG	9 cut(s)	55, 219, 271, 321, 393, 410, 419, 420, 428
Lsp1109I	GCAGC	7 cut(s)	17, 160, 204, 207, 325, 424, 467
LweI	GCATC	2 cut(s)	151, 291
MaeI	CTAG	2 cut(s)	63, 386
MaeII	ACGT	2 cut(s)	333, 479
MaeIII	GTNAC	3 cut(s)	276, 528, 576
MboII	GAAGA	2 cut(s)	45, 504
MluCI	AATT	6 cut(s)	19, 26, 255, 373, 689, 694
MlyI	GAGTC	3 cut(s)	596, 620, 635
MroXI	GAANNNNTTC	1 cut(s)	623
MseI	TTAA	3 cut(s)	351, 470, 693
MslI	CAYNNNNRTG	1 cut(s)	632
MspA1I	CMGCKG	1 cut(s)	729
MspI	CCGG	2 cut(s)	407, 415
MspR9I	CCNGG	1 cut(s)	415
MvnI	CGCG	2 cut(s)	261, 443
MwoI	GCNNNNNNNGC	6 cut(s)	148, 237, 267, 323, 354, 449
NciI	CCSGG	1 cut(s)	415
NcoI	CCATGG	1 cut(s)	459
NlaIII	CATG	3 cut(s)	229, 332, 463
NmeAIII	GCCGAG	2 cut(s)	270, 341
NmuCI	GTSAC	2 cut(s)	276, 528
NruI	TCGCGA	1 cut(s)	261
NsbI	TGCGCA	2 cut(s)	230, 327
NspI	RCATGY	1 cut(s)	229
PaeI	GCATGC	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	2 cut(s)	606, 611
PdmI	GAANNNNTTC	1 cut(s)	623
PfeI	GAWTC	1 cut(s)	548
PfoI	TCCNGGA	1 cut(s)	413
PleI	GAGTC	3 cut(s)	596, 619, 635
PpsI	GAGTC	3 cut(s)	596, 619, 635
PshAI	GACNNNNGTC	1 cut(s)	409
PspPI	GGNCC	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	729
RruI	TCGCGA	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	632
SaqAI	TTAA	3 cut(s)	351, 470, 693
Sau96I	GGNCC	1 cut(s)	319
SchI	GAGTC	3 cut(s)	596, 620, 635
ScrFI	CCNGG	1 cut(s)	415
SetI	ASST	9 cut(s)	34, 41, 68, 133, 268, 336, 482, 561, 731
SfaNI	GCATC	2 cut(s)	151, 291
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	2 cut(s)	104, 677
SmoI	CTYRAG	2 cut(s)	104, 677
SphI	GCATGC	1 cut(s)	229
Sse9I	AATT	6 cut(s)	19, 26, 255, 373, 689, 694
SsiI	CCGC	3 cut(s)	317, 441, 452
SspMI	CTAG	2 cut(s)	63, 386
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	534
TaiI	ACGT	2 cut(s)	336, 482
TaqI	TCGA	3 cut(s)	600, 614, 687
TasI	AATT	6 cut(s)	19, 26, 255, 373, 689, 694
TauI	GCSGC	3 cut(s)	320, 443, 455
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	3 cut(s)	351, 470, 693
Tru9I	TTAA	3 cut(s)	351, 470, 693
TseFI	GTSAC	2 cut(s)	276, 528
TseI	GCWGC	8 cut(s)	5, 148, 192, 195, 338, 437, 455, 726
Tsp45I	GTSAC	2 cut(s)	276, 528
TspDTI	ATGAA	3 cut(s)	45, 455, 616
XapI	RAATTY	3 cut(s)	255, 373, 689
XceI	RCATGY	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	623
XspI	CTAG	2 cut(s)	63, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.