Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009449.1

Orthogroup ID

OG0016370

Physical Location & Seq

Genomic Coordinates Forward (+)

35766 .. 36554

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009449.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggcaccagaaccaaacaattcagaagctgaaagcacgacaagcaactcatctctatgttcagtagcctcttctccgtgtttatctgggttgttgcagagtactactcattccaactcaccctccaacactaccaagaatcccaaaacaagtcagaaaggtgactcaaactcagagcagcagcagaagtcgcttaaaagaggaagagaatctagagatgataataacagcagcaagcacccggtttacagaggagtacgaatgcgcaattggggcaaatgggtgtccgaaattcgcgagcctcgcaagaagtcacgtatctggctaggcacattttcgacggcggaaatggcagcccgtgcccacgacgtggccgccctgagcatcaagggcaactcggccattctaaacttcccagaactggccgagttgctgccccgtccggagtcactcaaacctcccgacattcaagctgccgcggccaaagcggcagctatggttcatctgagttctaccatcacaacatcatcgtcgtccacatcctcatcctcttcctcgtcagagggtttggaatccgaagaggacctaggcgagattgtggagttacccaacatagaagacagcttcaactcaggcgagccgggaagcgagttcatactggtgaacgactcggtggatatagcgtggctgtatgatcatccgccattattggggctcgatcacaacttaattccaagcattacctttgaagaagatctagtgtcttgggatattcaaatgattacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

262

Amino Acids

28.4

Weight (kDa)

4.97

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016370)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32030
malus_domestica	MD09G1206700.v1.1 MD17G1187300.v1.1
prunus_persica	Prupe.3G062800_v2.0.a1
pyrus_communis	pycom09g12310 pycom17g19630
rosa_chinensis	RchiOBHm_Chr2g0139661
rosa_laevigata	RLG00000019824
rosa_multiflora	Rmu_sc0009449.1_g000010 Rmu_sc0011630.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105300
rosa_rugosa	Rorug02G0358900
rosa_samantha	Rh2AG408900 Rh2CG394800
rosa_wichuraiana	Rw2G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccII	CGCG	2 cut(s)	297, 479
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	6 cut(s)	344, 375, 477, 479, 488, 701
AcoI	YGGCCR	4 cut(s)	372, 399, 423, 480
AcsI	RAATTY	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	370
AfaI	GTAC	2 cut(s)	103, 258
AfiI	CCNNNNNNNGG	3 cut(s)	370, 421, 710
AgsI	TTSAA	4 cut(s)	470, 628, 749, 776
AjiI	CACGTC	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	253, 285
AluBI	AGCT	4 cut(s)	29, 473, 494, 624
AluI	AGCT	4 cut(s)	29, 473, 494, 624
AlwNI	CAGNNNCTG	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	442
AoxI	GGCC	4 cut(s)	372, 399, 423, 480
ApeKI	GCWGC	7 cut(s)	178, 181, 231, 353, 433, 473, 491
ApoI	RAATTY	1 cut(s)	291
AspA2I	CCTAGG	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	583
AsuC2I	CCSGG	2 cut(s)	242, 642
AsuHPI	GGTGA	3 cut(s)	111, 173, 673
AvaII	GGWCC	1 cut(s)	583
AvrII	CCTAGG	1 cut(s)	586
BaeGI	GKGCMC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	7 cut(s)	190, 193, 243, 365, 420, 460, 503
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	1 cut(s)	357
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	2 cut(s)	242, 642
BfaI	CTAG	4 cut(s)	213, 326, 587, 758
BglI	GCCNNNNNGGC	1 cut(s)	488
BglII	AGATCT	1 cut(s)	754
BlnI	CCTAGG	1 cut(s)	586
BmcAI	AGTACT	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	242, 642
Bme18I	GGWCC	1 cut(s)	583
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	242, 642
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	624
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu10I	CCTNAGC	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	242, 642
BsaAI	YACGTR	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	477, 586
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 421, 710
Bse1I	ACTGG	2 cut(s)	426, 663
BseAI	TCCGGA	1 cut(s)	442
BseDI	CCNNGG	2 cut(s)	477, 586
BseGI	GGATG	3 cut(s)	539, 545, 697
BseLI	CCNNNNNNNGG	3 cut(s)	370, 421, 710
BseMII	CTCAG	4 cut(s)	186, 371, 497, 645
BseNI	ACTGG	2 cut(s)	426, 663
BseRI	GAGGAG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	7 cut(s)	190, 193, 243, 365, 420, 460, 503
Bsh1236I	CGCG	2 cut(s)	297, 479
BshFI	GGCC	4 cut(s)	374, 401, 425, 482
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	3 cut(s)	242, 443, 641
BslI	CCNNNNNNNGG	3 cut(s)	370, 421, 710
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	4 cut(s)	374, 401, 425, 482
Bsp1286I	GDGCHC	2 cut(s)	364, 717
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	3 cut(s)	694, 718, 754
Bsp68I	TCGCGA	1 cut(s)	297
BspACI	CCGC	6 cut(s)	344, 375, 477, 479, 488, 701
BspANI	GGCC	4 cut(s)	374, 401, 425, 482
BspCNI	CTCAG	4 cut(s)	185, 372, 498, 644
BspEI	TCCGGA	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	297, 479
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	426, 663
BssECI	CCNNGG	2 cut(s)	477, 586
BssMI	GATC	3 cut(s)	694, 718, 754
BssT1I	CCWWGG	1 cut(s)	586
Bst6I	CTCTTC	4 cut(s)	76, 199, 556, 573
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	236, 299, 638
BstDEI	CTNAG	4 cut(s)	172, 380, 506, 631
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	539, 545, 697
BstFNI	CGCG	2 cut(s)	297, 479
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	3 cut(s)	697, 721, 757
BstMBI	GATC	3 cut(s)	694, 718, 754
BstSCI	CCNGG	2 cut(s)	240, 640
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	2 cut(s)	297, 479
BstV1I	GCAGC	7 cut(s)	190, 193, 243, 365, 420, 460, 503
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BsuRI	GGCC	4 cut(s)	374, 401, 425, 482
BtgI	CCRYGG	1 cut(s)	477
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	539, 545, 697
BtuMI	TCGCGA	1 cut(s)	297
Cac8I	GCNNGC	3 cut(s)	236, 299, 638
CaiI	CAGNNNCTG	1 cut(s)	29
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	583
Cfr42I	CCGCGG	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	102, 257
CviQI	GTAC	2 cut(s)	102, 257
DdeI	CTNAG	4 cut(s)	172, 380, 506, 631
DpnI	GATC	3 cut(s)	696, 720, 756
DpnII	GATC	3 cut(s)	694, 718, 754
DraIII	CACNNNGTG	1 cut(s)	370
EaeI	YGGCCR	4 cut(s)	372, 399, 423, 480
Eam1104I	CTCTTC	4 cut(s)	76, 199, 556, 573
EarI	CTCTTC	4 cut(s)	76, 199, 556, 573
EciI	GGCGGA	2 cut(s)	359, 690
Eco130I	CCWWGG	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	717
Eco47I	GGWCC	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	586
FaiI	YATR	6 cut(s)	58, 497, 614, 656, 680, 693
FbaI	TGATCA	1 cut(s)	694
FokI	GGATG	3 cut(s)	526, 532, 684
FriOI	GRGCYC	1 cut(s)	717
FspBI	CTAG	4 cut(s)	213, 326, 587, 758
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	1 cut(s)	266
HaeIII	GGCC	4 cut(s)	374, 401, 425, 482
HapII	CCGG	3 cut(s)	242, 443, 641
HhaI	GCGC	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	6 cut(s)	139, 164, 209, 446, 572, 668
HpaII	CCGG	3 cut(s)	242, 443, 641
HphI	GGTGA	3 cut(s)	111, 173, 673
Hpy166II	GTNNAC	3 cut(s)	247, 537, 664
Hpy188I	TCNGA	7 cut(s)	25, 156, 175, 289, 507, 562, 577
Hpy188III	TCNNGA	4 cut(s)	213, 296, 443, 461
Hpy8I	GTNNAC	3 cut(s)	247, 537, 664
Hpy99I	CGWCG	3 cut(s)	343, 371, 535
HpyCH4IV	ACGT	2 cut(s)	316, 369
HpyCH4V	TGCA	1 cut(s)	97
HpyF3I	CTNAG	4 cut(s)	172, 380, 506, 631
HpySE526I	ACGT	2 cut(s)	316, 369
HspAI	GCGC	1 cut(s)	265
Kpn2I	TCCGGA	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	694
KspI	CCGCGG	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	694, 718, 754
Lsp1109I	GCAGC	7 cut(s)	190, 193, 243, 365, 420, 460, 503
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	4 cut(s)	213, 326, 587, 758
MaeII	ACGT	2 cut(s)	316, 369
MaeIII	GTNAC	4 cut(s)	161, 312, 447, 603
MalI	GATC	3 cut(s)	696, 720, 756
MboI	GATC	3 cut(s)	694, 718, 754
MboII	GAAGA	7 cut(s)	63, 216, 543, 590, 629, 761, 764
MfeI	CAATTG	1 cut(s)	268
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	2 cut(s)	364, 717
MluCI	AATT	4 cut(s)	19, 268, 291, 729
MlyI	GAGTC	3 cut(s)	158, 455, 662
MmeI	TCCRAC	2 cut(s)	138, 150
MroI	TCCGGA	1 cut(s)	442
MseI	TTAA	3 cut(s)	195, 728, 787
MslI	CAYNNNNRTG	2 cut(s)	55, 659
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	3 cut(s)	242, 443, 641
MspR9I	CCNGG	2 cut(s)	242, 642
MunI	CAATTG	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	267
MvnI	CGCG	2 cut(s)	297, 479
NciI	CCSGG	2 cut(s)	242, 642
NdeII	GATC	3 cut(s)	694, 718, 754
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	2 cut(s)	377, 451
NmuCI	GTSAC	3 cut(s)	161, 312, 447
NruI	TCGCGA	1 cut(s)	297
NsbI	TGCGCA	1 cut(s)	266
PctI	GAATGC	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	139, 209, 572
PflMI	CCANNNNNTGG	1 cut(s)	370
PleI	GAGTC	3 cut(s)	158, 454, 662
PpsI	GAGTC	3 cut(s)	158, 454, 662
Ppu21I	YACGTR	1 cut(s)	317
PpuMI	RGGWCCY	1 cut(s)	583
Psp5II	RGGWCCY	1 cut(s)	583
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	583
PspPPI	RGGWCCY	1 cut(s)	583
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	754
RruI	TCGCGA	1 cut(s)	297
RsaI	GTAC	2 cut(s)	103, 258
RsaNI	GTAC	2 cut(s)	102, 257
RseI	CAYNNNNRTG	2 cut(s)	55, 659
SacII	CCGCGG	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	195, 728, 787
Sau3AI	GATC	3 cut(s)	694, 718, 754
Sau96I	GGNCC	1 cut(s)	583
ScaI	AGTACT	1 cut(s)	103
SchI	GAGTC	3 cut(s)	158, 455, 662
ScrFI	CCNGG	2 cut(s)	242, 642
SduI	GDGCHC	2 cut(s)	364, 717
SfaNI	GCATC	1 cut(s)	393
Sfr303I	CCGCGG	1 cut(s)	480
SgrBI	CCGCGG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	2 cut(s)	55, 659
Sse9I	AATT	4 cut(s)	19, 268, 291, 729
SsiI	CCGC	6 cut(s)	344, 375, 477, 479, 488, 701
SspMI	CTAG	4 cut(s)	213, 326, 587, 758
StyD4I	CCNGG	2 cut(s)	240, 640
StyI	CCWWGG	1 cut(s)	586
TaiI	ACGT	2 cut(s)	319, 372
TaqI	TCGA	2 cut(s)	338, 717
TasI	AATT	4 cut(s)	19, 268, 291, 729
TatI	WGTACW	1 cut(s)	101
TauI	GCSGC	4 cut(s)	377, 479, 482, 491
TfiI	GAWTC	3 cut(s)	139, 209, 572
Tru1I	TTAA	3 cut(s)	195, 728, 787
Tru9I	TTAA	3 cut(s)	195, 728, 787
TseFI	GTSAC	3 cut(s)	161, 312, 447
TseI	GCWGC	7 cut(s)	178, 181, 231, 353, 433, 473, 491
Tsp45I	GTSAC	3 cut(s)	161, 312, 447
TspDTI	ATGAA	2 cut(s)	491, 643
TspGWI	ACGGA	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	1 cut(s)	291
XbaI	TCTAGA	1 cut(s)	212
XmaJI	CCTAGG	1 cut(s)	586
XspI	CTAG	4 cut(s)	213, 326, 587, 758
ZrmI	AGTACT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.