pycom17g19630

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016370
Physical Location & Seq
Reverse (-)
17567234 .. 17567974
741 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g19630.1

Sequence Viewer

Length: 741 bp
ATGGCACCAGAACCAAACATTTCAGAAGCTGAAAGCACCAGCAACTCACCCTCATGCTCGTCTGGTTTGTTGCATACTCGCCCGAATTCAACCTCCAACACGCCCAACACCATAACCAAGAAGCCCAGCTCAGAGCAGCAGCAGCAGCAGCAGCAAGTAATACTCAAAAGAAAGAGACATGATGATAGCAACGTCAACAGCAGCAAACACCCAGTTTACAGAGGAGTTCGTATGCGCAACTGGGGAAAATGGGTGTCTGAAATTCGCGAGCCGCGCAAGAAGTCAAGAATCTGGCTTGGCACATTCTCAACTCCTGAGATGGCAGCCCGTGCGCATGACGTAGCCGCCCTCAGCATTAAGGGCAGCTCCGCCATTCTGAACTTTCCAGAACTGACCGAGTTGTTGCCACGGCCAGCGTCCCTTAAACCTCAAGATGTCCAGGCTGCCGCGACCAAAGCAGCAGCCATGGTTCATTTAAATTCTACAACATCATCATCATCGTTATCATCATCGTCCTCCTCCTCTTCCTTGTTGTTGTCGCAGTCCGAGGGTTCGGATTCTGAGGAGCTAGGGGAGATTGTGGAGTTACCCAATATCGAGGGCAGTTTCGAGTCGCCCGAGTCGAGGAACGAGTTCATACTGGTTAAGGACTCATTGGATGCGTGGGTATATCCATCACTGGGTGTCGAGGGAGTTGAGTTAAACTTGTGGGGATTTTTCTCATCAGATATTAGCAGCTGA

Protein Analysis

247

Amino Acids

26.8

Weight (kDa)

5.79

Isoelectric Point (pI)

69.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 71 - 121 4e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016370)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g32030
malus_domestica MD09G1206700.v1.1 MD17G1187300.v1.1
prunus_persica Prupe.3G062800_v2.0.a1
pyrus_communis pycom09g12310 pycom17g19630
rosa_chinensis RchiOBHm_Chr2g0139661
rosa_laevigata RLG00000019824
rosa_multiflora Rmu_sc0009449.1_g000010 Rmu_sc0011630.1_g000003
rosa_roxburghii Rroxscaffold_2G00105300
rosa_rugosa Rorug02G0358900
rosa_samantha Rh2AG408900 Rh2CG394800
rosa_wichuraiana Rw2G033480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 236, 333
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 3 cut(s) 267, 274, 449
AciI CCGC 4 cut(s) 272, 345, 369, 447
AcoI YGGCCR 1 cut(s) 410
AcsI RAATTY 3 cut(s) 85, 261, 478
AdeI CACNNNGTG 1 cut(s) 683
AfiI CCNNNNNNNGG 2 cut(s) 624, 680
AgsI TTSAA 1 cut(s) 90
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 5 cut(s) 29, 129, 366, 568, 738
AluI AGCT 5 cut(s) 29, 129, 366, 568, 738
Alw26I GTCTC 1 cut(s) 169
AlwNI CAGNNNCTG 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 617
AoxI GGCC 1 cut(s) 410
ApoI RAATTY 3 cut(s) 85, 261, 478
Asp700I GAANNNNTTC 1 cut(s) 632
AspLEI GCGC 3 cut(s) 237, 276, 334
AsuHPI GGTGA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 617
BanI GGYRCC 1 cut(s) 4
BbvCI CCTCAGC 1 cut(s) 350
BccI CCATC 2 cut(s) 313, 682
BceAI ACGGC 1 cut(s) 425
BciT130I CCWGG 1 cut(s) 440
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 569
Bme1390I CCNGG 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 617
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 440
BmrI ACTGGG 3 cut(s) 206, 250, 689
BmsI GCATC 1 cut(s) 649
BmuI ACTGGG 3 cut(s) 206, 250, 689
Bpu10I CCTNAGC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 414
BsaJI CCNNGG 3 cut(s) 407, 465, 546
Bsc4I CCNNNNNNNGG 2 cut(s) 624, 680
Bse1I ACTGG 4 cut(s) 212, 245, 645, 684
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 3 cut(s) 407, 465, 546
BseGI GGATG 1 cut(s) 664
BseLI CCNNNNNNNGG 2 cut(s) 624, 680
BseMII CTCAG 4 cut(s) 144, 306, 364, 552
BseNI ACTGG 4 cut(s) 212, 245, 645, 684
BseRI GAGGAG 4 cut(s) 237, 508, 511, 578
BseYI CCCAGC 1 cut(s) 125
Bsh1236I CGCG 3 cut(s) 267, 274, 449
BshFI GGCC 1 cut(s) 412
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 617
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 2 cut(s) 624, 680
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 1 cut(s) 412
BsoBI CYCGRG 1 cut(s) 617
Bsp19I CCATGG 1 cut(s) 465
Bsp68I TCGCGA 1 cut(s) 267
BspACI CCGC 4 cut(s) 272, 345, 369, 447
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 4 cut(s) 143, 307, 363, 553
BspFNI CGCG 3 cut(s) 267, 274, 449
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 4 cut(s) 212, 245, 645, 684
BssECI CCNNGG 3 cut(s) 407, 465, 546
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 529
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 269, 414
BstDEI CTNAG 4 cut(s) 130, 315, 350, 561
BstDSI CCRYGG 2 cut(s) 407, 465
BstF5I GGATG 1 cut(s) 664
BstFNI CGCG 3 cut(s) 267, 274, 449
BstHHI GCGC 3 cut(s) 237, 276, 334
BstMAI GTCTC 1 cut(s) 169
BstMWI GCNNNNNNNGC 8 cut(s) 142, 145, 148, 151, 273, 329, 360, 455
BstNI CCWGG 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 438
BstUI CGCG 3 cut(s) 267, 274, 449
BsuRI GGCC 1 cut(s) 412
BtgI CCRYGG 2 cut(s) 407, 465
BtsCI GGATG 1 cut(s) 664
BtsIMutI CAGTG 1 cut(s) 677
BtuMI TCGCGA 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 269, 414
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 3 cut(s) 237, 276, 334
CseI GACGC 1 cut(s) 405
CviAII CATG 4 cut(s) 54, 179, 335, 466
DdeI CTNAG 4 cut(s) 130, 315, 350, 561
DraI TTTAAA 1 cut(s) 477
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 1 cut(s) 410
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
EciI GGCGGA 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 4 cut(s) 57, 182, 338, 469
FaiI YATR 9 cut(s) 55, 75, 113, 180, 233, 336, 467, 638, 670
FaqI GGGAC 1 cut(s) 403
FatI CATG 4 cut(s) 53, 178, 334, 465
FokI GGATG 1 cut(s) 671
FspAI RTGCGCAY 1 cut(s) 333
FspBI CTAG 1 cut(s) 569
FspI TGCGCA 2 cut(s) 236, 333
GlaI GCGC 3 cut(s) 236, 275, 333
GsaI CCCAGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 412
HgaI GACGC 1 cut(s) 405
HhaI GCGC 3 cut(s) 237, 276, 334
Hin1II CATG 4 cut(s) 57, 182, 338, 469
Hin6I GCGC 3 cut(s) 235, 274, 332
HinP1I GCGC 3 cut(s) 235, 274, 332
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 5 cut(s) 288, 557, 611, 620, 650
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 2 cut(s) 196, 217
Hpy188I TCNGA 8 cut(s) 25, 133, 259, 378, 547, 556, 562, 727
Hpy188III TCNNGA 5 cut(s) 266, 285, 314, 386, 431
Hpy8I GTNNAC 2 cut(s) 196, 217
HpyCH4IV ACGT 2 cut(s) 192, 339
HpyCH4V TGCA 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 8 cut(s) 142, 145, 148, 151, 273, 329, 360, 455
HpyF3I CTNAG 4 cut(s) 130, 315, 350, 561
HpySE526I ACGT 2 cut(s) 192, 339
Hsp92II CATG 4 cut(s) 57, 182, 338, 469
HspAI GCGC 3 cut(s) 235, 274, 332
LmnI GCTCC 2 cut(s) 371, 565
LweI GCATC 1 cut(s) 649
MaeI CTAG 1 cut(s) 569
MaeII ACGT 2 cut(s) 192, 339
MaeIII GTNAC 1 cut(s) 585
MboII GAAGA 1 cut(s) 516
MluCI AATT 3 cut(s) 85, 261, 478
MlyI GAGTC 3 cut(s) 620, 629, 644
MmeI TCCRAC 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 632
MseI TTAA 5 cut(s) 357, 423, 476, 645, 701
MslI CAYNNNNRTG 1 cut(s) 52
MspA1I CMGCKG 1 cut(s) 738
MspR9I CCNGG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 440
MvnI CGCG 3 cut(s) 267, 274, 449
MwoI GCNNNNNNNGC 8 cut(s) 142, 145, 148, 151, 273, 329, 360, 455
NcoI CCATGG 1 cut(s) 465
NlaIII CATG 4 cut(s) 57, 182, 338, 469
NlaIV GGNNCC 1 cut(s) 6
NruI TCGCGA 1 cut(s) 267
NsbI TGCGCA 2 cut(s) 236, 333
PcsI WCGNNNNNNNCGW 2 cut(s) 615, 620
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 2 cut(s) 288, 557
PleI GAGTC 3 cut(s) 619, 628, 644
PpsI GAGTC 3 cut(s) 619, 628, 644
Psp6I CCWGG 1 cut(s) 438
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 738
RruI TCGCGA 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 52
SaqAI TTAA 5 cut(s) 357, 423, 476, 645, 701
SchI GAGTC 3 cut(s) 620, 629, 644
ScrFI CCNGG 1 cut(s) 440
SetI ASST 9 cut(s) 31, 95, 131, 195, 342, 368, 430, 570, 740
SfaNI GCATC 1 cut(s) 649
SmiI ATTTAAAT 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse9I AATT 3 cut(s) 85, 261, 478
SsiI CCGC 4 cut(s) 272, 345, 369, 447
SspMI CTAG 1 cut(s) 569
StyD4I CCNGG 1 cut(s) 438
StyI CCWWGG 1 cut(s) 465
SwaI ATTTAAAT 1 cut(s) 477
TaiI ACGT 2 cut(s) 195, 342
TaqI TCGA 4 cut(s) 597, 609, 623, 687
TaqII GACCGA 1 cut(s) 410
TasI AATT 3 cut(s) 85, 261, 478
TauI GCSGC 3 cut(s) 274, 347, 449
TfiI GAWTC 2 cut(s) 288, 557
Tru1I TTAA 5 cut(s) 357, 423, 476, 645, 701
Tru9I TTAA 5 cut(s) 357, 423, 476, 645, 701
TscAI CASTG 1 cut(s) 684
TspDTI ATGAA 2 cut(s) 461, 625
TspRI CASTG 1 cut(s) 684
XapI RAATTY 3 cut(s) 85, 261, 478
XmnI GAANNNNTTC 1 cut(s) 632
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.