Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013153

Physical Location & Seq

Genomic Coordinates Reverse (-)

4548958 .. 4551351

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G063600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGCAGTCTCCAACTGAGCTCTTGTGGTTCATCTTTTTGCTCCCTCCCATTTCACTTGATAAATTCCACCATTGCCAACTCCCATTCAACTCTCAGACCCTCTAAGCCTCTCAGCTTCTTCTCCAGAGGAAAAATTAGAGCAGTTAGCACATCCCAAGAGAACCCATCTGGAGCTATTGACCCAGAGCAACCCCCTTTGGTTGATTTTGCATTTGTTAGTTCTGTGTTACTTCCTGATCAAACACCAGATGTGCATCTTCGTCAAGCTTGTGGAGGGCAGAAGCTTAGGAATATAATGTTGGATTCAAATATTGATTTGTATGGACCCTATGCCAGGACTCTGCTCAATTGTGGGGGAGTAGGAACCTGCGGGACATGTATGGTTGAGGTTGTTCAAGGAAAAGAGCTGTTAAACCCTCGAACAGGAAAAGAGAAGGAACACCTTAAAAAGAAACCGAAAAATTGGAGACTTGCTTGCCAAACCACAGTTGGGAAACCTGATTCTAGAGGACTGGTTGTTGTCCAACAACTGCCAGAATGGAAAGCACATGAATGGCGTTATGAAGAAATCCTAGTAGACCCTTCACAACCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer2

Protein Analysis

200

Amino Acids

21.87

Weight (kDa)

8.69

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16250
fragaria_vesca	FvH4_6g31980 FvH4_6g31980
malus_domestica	MD09G1207300.v1.1 MD17G1188300.v1.1
prunus_persica	Prupe.3G063600_v2.0.a1 Prupe.3G063600_v2.0.a1
pyrus_communis	pycom17g19700
rosa_chinensis	RchiOBHm_Chr2g0139561
rosa_laevigata	RLG00000019819
rosa_multiflora	Rmu_sc0003427.1_g000005
rosa_roxburghii	Rroxscaffold_2G00105390
rosa_rugosa	Rorug02G0358400
rosa_samantha	Rh2AG408200 Rh2BG418800 Rh2CG394200 Rh2DG427900
rosa_wichuraiana	Rw2G033540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	579
AciI	CCGC	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	64
AfiI	CCNNNNNNNGG	3 cut(s)	336, 425, 492
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	90, 309, 398
AjnI	CCWGG	1 cut(s)	335
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	6 cut(s)	21, 117, 176, 269, 286, 409
AluI	AGCT	6 cut(s)	21, 117, 176, 269, 286, 409
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	2 cut(s)	14, 463
ApoI	RAATTY	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	23
BccI	CCATC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	337
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	14, 463
BfaI	CTAG	2 cut(s)	507, 575
BfuAI	ACCTGC	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	2 cut(s)	328, 367
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	2 cut(s)	109, 192
Bpu10I	CCTNAGC	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	3 cut(s)	336, 425, 492
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	152
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	3 cut(s)	336, 425, 492
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	3 cut(s)	8, 109, 127
BseNI	ACTGG	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	3 cut(s)	336, 425, 492
BsmAI	GTCTC	2 cut(s)	14, 463
BsmFI	GGGAC	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	1 cut(s)	372
BspCNI	CTCAG	3 cut(s)	9, 108, 126
BspLI	GGNNCC	2 cut(s)	328, 367
BspMI	ACCTGC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	519
BssMI	GATC	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	5 cut(s)	17, 95, 105, 113, 287
BstENI	CCTNNNNNAGG	2 cut(s)	334, 423
BstF5I	GGATG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	2 cut(s)	14, 463
BstMBI	GATC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	337
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	152
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	326
CviAII	CATG	2 cut(s)	378, 551
CviJI	RGCY	7 cut(s)	21, 109, 117, 176, 269, 286, 409
CviKI_1	RGCY	7 cut(s)	21, 109, 117, 176, 269, 286, 409
DdeI	CTNAG	5 cut(s)	17, 95, 105, 113, 287
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	326
Eco53kI	GAGCTC	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	21
EcoNI	CCTNNNNNAGG	2 cut(s)	334, 423
EcoRII	CCWGG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	23
FaeI	CATG	2 cut(s)	381, 554
FaiI	YATR	8 cut(s)	296, 324, 333, 379, 383, 552, 564, 598
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	2 cut(s)	377, 550
FauI	CCCGC	1 cut(s)	365
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	579
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	23
FspBI	CTAG	2 cut(s)	507, 575
GsuI	CTGGAG	2 cut(s)	109, 192
Hin1II	CATG	2 cut(s)	381, 554
HindIII	AAGCTT	2 cut(s)	267, 284
HinfI	GANTC	3 cut(s)	305, 340, 503
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	4 cut(s)	126, 171, 236, 507
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	2 cut(s)	430, 594
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4V	TGCA	2 cut(s)	212, 256
HpyF3I	CTNAG	5 cut(s)	17, 95, 105, 113, 287
Hsp92II	CATG	2 cut(s)	381, 554
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	47, 173
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	507, 575
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	3 cut(s)	112, 251, 578
MfeI	CAATTG	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	4 cut(s)	64, 135, 349, 463
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	3 cut(s)	37, 282, 550
MnlI	CCTC	8 cut(s)	56, 112, 120, 122, 269, 382, 429, 503
MseI	TTAA	2 cut(s)	413, 447
MslI	CAYNNNNRTG	1 cut(s)	553
MspR9I	CCNGG	1 cut(s)	337
MunI	CAATTG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	337
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	381, 554
NlaIV	GGNNCC	2 cut(s)	328, 367
NspI	RCATGY	1 cut(s)	381
PciI	ACATGT	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	305, 503
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PscI	ACATGT	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	2 cut(s)	328, 367
PspPI	GGNCC	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	553
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	413, 447
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	23
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	553
Sse9I	AATT	4 cut(s)	64, 135, 349, 463
SsiI	CCGC	1 cut(s)	372
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	2 cut(s)	507, 575
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	490
TaqI	TCGA	1 cut(s)	421
TasI	AATT	4 cut(s)	64, 135, 349, 463
TfiI	GAWTC	2 cut(s)	305, 503
Tru1I	TTAA	2 cut(s)	413, 447
Tru9I	TTAA	2 cut(s)	413, 447
TspDTI	ATGAA	3 cut(s)	21, 567, 579
VpaK11BI	GGWCC	1 cut(s)	326
XagI	CCTNNNNNAGG	2 cut(s)	334, 423
XapI	RAATTY	1 cut(s)	64
XbaI	TCTAGA	1 cut(s)	506
XceI	RCATGY	1 cut(s)	381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	2 cut(s)	507, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.