Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013153

Physical Location & Seq

Genomic Coordinates Reverse (-)

53682426 .. 53684223

Gene Structure 1798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG394200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGTACTCTCCAGTTGAGCTCTTGTGGTTCATCATTTTGCTCACCCATCCCTTCTAACCTGATCAGTCACAACATTACCACCTCCCATTCAACTCCCAAGTCCCTCACTTTCTCCGGAGGGAAAATAAGAGCAGTTAGCACAGCTCCAAATAGTAGTGAATCTGCACAAGCCATTGAACCAGAACAACAACCTCCTCTGGTTGATTTTGCATTTGTTAACTCTGTGTTGCTACCTGATCAAACCCCGGATGTGCATCTTCGTCAAGCCTGTGGAGGACAGAAGCTTAGGAATATAATGTTGGATGGAAATATTGAATTGTATGGACCATATGCTAGACCTCTGCTGAATTGTGGTGGTGGAGGAACCTGTGGAACATGTATGGTGGAGGTTATTAAAGGAAAGGAGCTCTTGAGCCCTCGGACAGACAAAGAAAAGAAACACCTTCAAAAGGTATGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer2

Protein Analysis

154

Amino Acids

16.43

Weight (kDa)

8.18

Isoelectric Point (pI)

63.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16250
fragaria_vesca	FvH4_6g31980 FvH4_6g31980
malus_domestica	MD09G1207300.v1.1 MD17G1188300.v1.1
prunus_persica	Prupe.3G063600_v2.0.a1 Prupe.3G063600_v2.0.a1
pyrus_communis	pycom17g19700
rosa_chinensis	RchiOBHm_Chr2g0139561
rosa_laevigata	RLG00000019819
rosa_multiflora	Rmu_sc0003427.1_g000005
rosa_roxburghii	Rroxscaffold_2G00105390
rosa_rugosa	Rorug02G0358400
rosa_samantha	Rh2AG408200 Rh2BG418800 Rh2CG394200 Rh2DG427900
rosa_wichuraiana	Rw2G033540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	116
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	93, 179, 317, 449
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	4 cut(s)	21, 146, 286, 409
AluI	AGCT	4 cut(s)	21, 146, 286, 409
Alw21I	GWGCWC	2 cut(s)	23, 411
Aor13HI	TCCGGA	1 cut(s)	116
ArsI	GACNNNNNNTTYG	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	326
BanII	GRGCYC	3 cut(s)	23, 411, 419
Bbv12I	GWGCWC	2 cut(s)	23, 411
BccI	CCATC	2 cut(s)	56, 299
BclI	TGATCA	2 cut(s)	63, 238
BcnI	CCSGG	1 cut(s)	248
BfaI	CTAG	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	265
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	246, 419
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	1 cut(s)	13
Bse8I	GATNNNNATC	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	246, 419
BseGI	GGATG	3 cut(s)	48, 256, 310
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	23, 411
BsiSI	CCGG	2 cut(s)	117, 248
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	88
Bsp1286I	GDGCHC	3 cut(s)	23, 411, 419
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	63, 238
BspEI	TCCGGA	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	246, 419
BssMI	GATC	2 cut(s)	63, 238
BstDEI	CTNAG	1 cut(s)	287
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	48, 256, 310
BstKTI	GATC	2 cut(s)	66, 241
BstMBI	GATC	2 cut(s)	63, 238
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	246
BtsCI	GGATG	3 cut(s)	48, 256, 310
Cfr13I	GGNCC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	1 cut(s)	378
CviJI	RGCY	7 cut(s)	21, 146, 173, 269, 286, 409, 417
CviKI_1	RGCY	7 cut(s)	21, 146, 173, 269, 286, 409, 417
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	2 cut(s)	65, 240
DpnII	GATC	2 cut(s)	63, 238
Ecl136II	GAGCTC	2 cut(s)	21, 409
Eco24I	GRGCYC	3 cut(s)	23, 411, 419
Eco47I	GGWCC	1 cut(s)	326
Eco53kI	GAGCTC	2 cut(s)	21, 409
EcoICRI	GAGCTC	2 cut(s)	21, 409
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoT38I	GRGCYC	3 cut(s)	23, 411, 419
FaeI	CATG	1 cut(s)	381
FaiI	YATR	7 cut(s)	296, 324, 331, 333, 379, 383, 457
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	377
FauNDI	CATATG	1 cut(s)	331
FbaI	TGATCA	2 cut(s)	63, 238
FokI	GGATG	3 cut(s)	35, 263, 317
FriOI	GRGCYC	3 cut(s)	23, 411, 419
FspBI	CTAG	1 cut(s)	336
HapII	CCGG	2 cut(s)	117, 248
Hin1II	CATG	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	1 cut(s)	161
HpaI	GTTAAC	1 cut(s)	220
HpaII	CCGG	2 cut(s)	117, 248
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	2 cut(s)	117, 412
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	63, 455
HpyCH4V	TGCA	3 cut(s)	167, 212, 256
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	381
Kpn2I	TCCGGA	1 cut(s)	116
Ksp22I	TGATCA	2 cut(s)	63, 238
KspAI	GTTAAC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	63, 238
LmnI	GCTCC	2 cut(s)	151, 406
LpnPI	CCDG	9 cut(s)	26, 74, 130, 185, 195, 249, 261, 283, 382
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	2 cut(s)	65, 240
MboI	GATC	2 cut(s)	63, 238
MboII	GAAGA	1 cut(s)	251
MhlI	GDGCHC	3 cut(s)	23, 411, 419
MluCI	AATT	2 cut(s)	317, 349
MmeI	TCCRAC	1 cut(s)	282
MroI	TCCGGA	1 cut(s)	116
MseI	TTAA	2 cut(s)	219, 396
MspI	CCGG	2 cut(s)	117, 248
MspR9I	CCNGG	1 cut(s)	248
NciI	CCSGG	1 cut(s)	248
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	2 cut(s)	63, 238
NlaIII	CATG	1 cut(s)	381
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	68
NspI	RCATGY	1 cut(s)	381
PciI	ACATGT	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	161
PscI	ACATGT	1 cut(s)	377
Psp124BI	GAGCTC	2 cut(s)	23, 411
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	326
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SacI	GAGCTC	2 cut(s)	23, 411
SaqAI	TTAA	2 cut(s)	219, 396
Sau3AI	GATC	2 cut(s)	63, 238
Sau96I	GGNCC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	3 cut(s)	23, 411, 419
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	2 cut(s)	317, 349
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	336
SstI	GAGCTC	2 cut(s)	23, 411
StyD4I	CCNGG	1 cut(s)	246
TasI	AATT	2 cut(s)	317, 349
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	219, 396
Tru9I	TTAA	2 cut(s)	219, 396
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	326
XagI	CCTNNNNNAGG	1 cut(s)	449
XceI	RCATGY	1 cut(s)	381
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.