RLG00000019819

2Fe-2S iron-sulfur cluster binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013153
Physical Location & Seq
Reverse (-)
57092821 .. 57094170
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019819

Sequence Viewer

Length: 564 bp
ATGGGTACTCTCCAGTTGAGCTCTTGTGGTTCATCATTTTGCTCACCCATCCCTTCTAACCTGATCAGTCACAACATTACCACCTCCCATTCAACTCCCAAGTCCCTCACTTTCTCCGGAGGGAAAATAAGAGCAGTTAGCACAGCTCCAAATAGTAGTGAATCTGCACAAGCCATTGCACCAGAACAACAACCTCCTCTGGTTGATTTTGCATTTGTTAACTCCGTGTTGCTACCTGATCAAACCCCGGATGTGCATCTTCGTCAAGCCTGTGGAGGACAAAAGCTTAGGAATATAATGTTGGATGGAAATATTGAATTGTATGGACCATATGCTAGACCTCTGCTGAATTGTGGTGGTGGAGGAACCTGTGGAACATGTATGGTGGAGGTTATTAAAGGAAAGGAGCTCTTGAGCCCTCGCTTATTGCAGAAACCAAAGAATTGGAGACTTGCTTGCCAAGCCACAGTAGGGAAACCTGACTCCAGGGGGCTGGTTGTTGTTCAACAACTACCTGAATGGAAAGCACATGAATGGAAGTATGAGGACACCCTAGTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fer2

Protein Analysis

188

Amino Acids

20.17

Weight (kDa)

8.49

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 117 - 157 7.2e-08 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16250
fragaria_vesca FvH4_6g31980 FvH4_6g31980
malus_domestica MD09G1207300.v1.1 MD17G1188300.v1.1
prunus_persica Prupe.3G063600_v2.0.a1 Prupe.3G063600_v2.0.a1
pyrus_communis pycom17g19700
rosa_chinensis RchiOBHm_Chr2g0139561
rosa_laevigata RLG00000019819
rosa_multiflora Rmu_sc0003427.1_g000005
rosa_roxburghii Rroxscaffold_2G00105390
rosa_rugosa Rorug02G0358400
rosa_samantha Rh2AG408200 Rh2BG418800 Rh2CG394200 Rh2DG427900
rosa_wichuraiana Rw2G033540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 116
AfaI GTAC 2 cut(s) 7, 558
AfiI CCNNNNNNNGG 1 cut(s) 471
AflIII ACRYGT 1 cut(s) 377
AgsI TTSAA 3 cut(s) 93, 317, 506
AjnI CCWGG 1 cut(s) 485
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 4 cut(s) 21, 146, 286, 409
AluI AGCT 4 cut(s) 21, 146, 286, 409
Alw21I GWGCWC 2 cut(s) 23, 411
Alw26I GTCTC 1 cut(s) 442
Aor13HI TCCGGA 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 36
AvaII GGWCC 1 cut(s) 326
BanII GRGCYC 3 cut(s) 23, 411, 419
Bbv12I GWGCWC 2 cut(s) 23, 411
BccI CCATC 2 cut(s) 56, 299
BciT130I CCWGG 1 cut(s) 487
BclI TGATCA 2 cut(s) 63, 238
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 2 cut(s) 336, 554
Bme1390I CCNGG 2 cut(s) 248, 487
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 2 cut(s) 248, 487
BmsI GCATC 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 469
Bpu10I CCTNAGC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 433
BpuMI CCSGG 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 246, 486
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 2 cut(s) 246, 486
BseGI GGATG 3 cut(s) 48, 256, 310
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 471
BseMI GCAATG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 23, 411
BsiSI CCGG 2 cut(s) 117, 248
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 471
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 88
Bsp1286I GDGCHC 3 cut(s) 23, 411, 419
Bsp13I TCCGGA 1 cut(s) 116
Bsp143I GATC 2 cut(s) 63, 238
BspEI TCCGGA 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 246, 486
BssMI GATC 2 cut(s) 63, 238
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 2 cut(s) 469, 561
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 48, 256, 310
BstKTI GATC 2 cut(s) 66, 241
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 2 cut(s) 63, 238
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 1 cut(s) 487
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 2 cut(s) 246, 485
BstXI CCANNNNNNTGG 2 cut(s) 444, 493
BtsCI GGATG 3 cut(s) 48, 256, 310
Cac8I GCNNGC 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 6, 557
CviAII CATG 2 cut(s) 378, 530
CviJI RGCY 9 cut(s) 21, 146, 173, 269, 286, 409, 417, 464, 493
CviKI_1 RGCY 9 cut(s) 21, 146, 173, 269, 286, 409, 417, 464, 493
CviQI GTAC 2 cut(s) 6, 557
DdeI CTNAG 1 cut(s) 287
DpnI GATC 2 cut(s) 65, 240
DpnII GATC 2 cut(s) 63, 238
Ecl136II GAGCTC 2 cut(s) 21, 409
Eco24I GRGCYC 3 cut(s) 23, 411, 419
Eco47I GGWCC 1 cut(s) 326
Eco53kI GAGCTC 2 cut(s) 21, 409
EcoICRI GAGCTC 2 cut(s) 21, 409
EcoRII CCWGG 1 cut(s) 485
EcoT38I GRGCYC 3 cut(s) 23, 411, 419
FaeI CATG 2 cut(s) 381, 533
FaiI YATR 8 cut(s) 296, 324, 331, 333, 379, 383, 531, 543
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 88
FatI CATG 2 cut(s) 377, 529
FauNDI CATATG 1 cut(s) 331
FbaI TGATCA 2 cut(s) 63, 238
FokI GGATG 3 cut(s) 35, 263, 317
FriOI GRGCYC 3 cut(s) 23, 411, 419
FspBI CTAG 2 cut(s) 336, 554
GsuI CTGGAG 1 cut(s) 469
HapII CCGG 2 cut(s) 117, 248
Hin1II CATG 2 cut(s) 381, 533
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 2 cut(s) 161, 482
HpaI GTTAAC 1 cut(s) 220
HpaII CCGG 2 cut(s) 117, 248
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 2 cut(s) 117, 412
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 2 cut(s) 469, 561
HpyCH4V TGCA 5 cut(s) 167, 179, 212, 256, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 2 cut(s) 381, 533
Kpn2I TCCGGA 1 cut(s) 116
Ksp22I TGATCA 2 cut(s) 63, 238
KspAI GTTAAC 1 cut(s) 220
Kzo9I GATC 2 cut(s) 63, 238
LmnI GCTCC 2 cut(s) 151, 406
LweI GCATC 1 cut(s) 265
MaeI CTAG 2 cut(s) 336, 554
MaeIII GTNAC 1 cut(s) 68
MalI GATC 2 cut(s) 65, 240
MboI GATC 2 cut(s) 63, 238
MboII GAAGA 1 cut(s) 251
MhlI GDGCHC 3 cut(s) 23, 411, 419
MluCI AATT 3 cut(s) 317, 349, 442
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 282
MroI TCCGGA 1 cut(s) 116
MseI TTAA 2 cut(s) 219, 396
MslI CAYNNNNRTG 1 cut(s) 532
MspI CCGG 2 cut(s) 117, 248
MspR9I CCNGG 2 cut(s) 248, 487
MvaI CCWGG 1 cut(s) 487
MwoI GCNNNNNNNGC 1 cut(s) 461
NciI CCSGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 331
NdeII GATC 2 cut(s) 63, 238
NlaIII CATG 2 cut(s) 381, 533
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 1 cut(s) 381
PciI ACATGT 1 cut(s) 377
PfeI GAWTC 1 cut(s) 161
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
PscI ACATGT 1 cut(s) 377
Psp124BI GAGCTC 2 cut(s) 23, 411
Psp6I CCWGG 1 cut(s) 485
PspGI CCWGG 1 cut(s) 485
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 1 cut(s) 326
RsaI GTAC 2 cut(s) 7, 558
RsaNI GTAC 2 cut(s) 6, 557
RseI CAYNNNNRTG 1 cut(s) 532
SacI GAGCTC 2 cut(s) 23, 411
SaqAI TTAA 2 cut(s) 219, 396
Sau3AI GATC 2 cut(s) 63, 238
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 2 cut(s) 248, 487
SduI GDGCHC 3 cut(s) 23, 411, 419
SfaNI GCATC 1 cut(s) 265
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 532
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 3 cut(s) 317, 349, 442
SspI AATATT 1 cut(s) 313
SspMI CTAG 2 cut(s) 336, 554
SstI GAGCTC 2 cut(s) 23, 411
StyD4I CCNGG 2 cut(s) 246, 485
TaaI ACNGT 2 cut(s) 469, 561
TasI AATT 3 cut(s) 317, 349, 442
TatI WGTACW 1 cut(s) 556
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 219, 396
Tru9I TTAA 2 cut(s) 219, 396
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 21, 546
TspGWI ACGGA 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 326
XceI RCATGY 1 cut(s) 381
XspI CTAG 2 cut(s) 336, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.