Prupe.3G160100_v2.0.a1

Pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
17888580 .. 17890563
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G160100.1

Sequence Viewer

Length: 1608 bp
ATGACCAGGACCAGCAGAAAACGACGCCATGGTTACCCACCTCCTCTCCCCTCTTCTTCTTCAAACCCAAATCGCCATAAACACCAACCCACCAAGAAACTCCACTCTTCCCCAAACTCAATTCGGAAAAACCACAATTCTTCAACCCCAATTCAGAAAAACCACTTGTCCTCAACCCCAATCCCTTTGCCCCTAAACCCAGTTCCACAAACCCCCATGCCTAAGCGCCCAACCTTTGCCTCATACCTTGACACACCCAATCTACCTCCCAAGATCAGACTCCTCTGTGAAATAGTGGCCAAGACCCACACTCTTTCTGTTGAGGAACGCCTGGCAGAGACTAGTGTTAGAGTGACCCAAGAAGACGTTGAAGAGGTCCTCAAACTCTCTTACGCTTTTCCGGGTCCCGCCGTGAAGTTCTTTAGGTGGGCTGGCCACCATCTCAATGACTACCACAGCCCCTATGCGTGGAACTTGGTTGTTGATCTTCTGGGCAAGAATTGCTTCTTTGATGCGATGTGGGACGCCATAAAGTCCATGAGAAAAGAAAGGTTACTCTCTTTGGCCACTTTTGCTTCTGTTTTTAGTAGTTATGTAATTGCCAATCGTGTCCAGGAGGCTTTTATGACTTTTGAGGTTATGAGCGAATATGGATGCCCTAGAGATATTGTGGCATTGAATTCCCTTTTGAGTGCAATTTGTAGAGATGGGAAGACTTCAGATGCCGTTGATTTTTTGCGTATTGCTAAGGATAAGATTAAGCCAGACCCTGATACATATGCGATTTTGTTGGAGGGGTGGGAAAATGAAGGCAATGTAGCTTGTGCTAGGCAGGTTTTCTCTGAGATGGTAATTGAGATTGGTTGGGACCCGAGCAATGTGCCAGCTTATGATTCATTCTTGAATACTTTGCTTAAGGGGCCTGATGGGATCCGCGAAGCAGTGAAGTTCTTTGAGACCTTAAAAGATAGGAGGTGTTATCCGGGGGTCAAGTTTTTCAGGCTTGCTCTTGATGAGTGTGTCAAGAATAGCGATTCTCGGGGAGCTGAGGCTCTTTGGCATGCAATGGTAGGGATAATTGGTTTCCAACCTGATACAAATATGTGTAATTTGATGATTTCTTTACATTGTCGTGAAGGAAATCCAGATTTAGCAAAGAGAATGTTGGATGATATGGTGTACAATGGGGCATTTCCGAATTCACAAACATATGACATGTTGTTTAAGTCGTTGATCAAGAATAGGAAGTTGAAGGAGGCATCGATTTTGTTTACTGAGATGGTTAAAAATGAGTGTGTTCCAGAGCATGCTAATTGTAATATGGCAGTAAGGACTTTCCTTGATTTGGGGGATCCTTATTTTGCTATAAAAGTTTGGAAGTGCATGCTAGAGAATTACCATTCTGGCTTGGAGGATACTGGGAATTTGTTGGTTGTAGGGCTTGGCGATCTGAATAGGGTCCCAGAAGCAGTTAAGTATGCAGAGGATATGATTGTAAGAGGAATCAAATTGGAATTTTCCACATTGTCAAAGCTGAAGCAGAACCTTGTCCAAGCAAGGAAGGAATACTTGTATGATGAACTTTTTAGAAAGTGGAAAGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

536

Amino Acids

60.94

Weight (kDa)

8.55

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014786)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 823
AccII CGCG 1 cut(s) 936
AciI CCGC 2 cut(s) 408, 934
AclWI GGATC 4 cut(s) 925, 938, 1346, 1359
AcoI YGGCCR 3 cut(s) 297, 433, 564
AcsI RAATTY 4 cut(s) 679, 1198, 1423, 1514
AcuI CTGAAG 2 cut(s) 702, 1556
AcyI GRCGYC 2 cut(s) 25, 525
AfaI GTAC 1 cut(s) 1181
AfiI CCNNNNNNNGG 2 cut(s) 468, 1345
AflII CTTAAG 1 cut(s) 914
AflIII ACRYGT 1 cut(s) 1215
AgsI TTSAA 6 cut(s) 63, 144, 371, 679, 904, 1252
AhlI ACTAGT 1 cut(s) 341
AjnI CCWGG 3 cut(s) 5, 330, 612
AluBI AGCT 4 cut(s) 821, 887, 1046, 1534
AluI AGCT 4 cut(s) 821, 887, 1046, 1534
Alw26I GTCTC 2 cut(s) 332, 950
AlwI GGATC 4 cut(s) 925, 938, 1346, 1359
AlwNI CAGNNNCTG 1 cut(s) 770
Ama87I CYCGRG 2 cut(s) 871, 1038
AoxI GGCC 4 cut(s) 297, 433, 564, 920
ApoI RAATTY 4 cut(s) 679, 1198, 1423, 1514
Asp700I GAANNNNTTC 1 cut(s) 503
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 6 cut(s) 9, 376, 404, 868, 920, 1459
AsuC2I CCSGG 2 cut(s) 402, 984
AvaI CYCGRG 2 cut(s) 871, 1038
AvaII GGWCC 5 cut(s) 9, 376, 404, 868, 1459
BalI TGGCCA 3 cut(s) 299, 435, 566
BamHI GGATCC 2 cut(s) 930, 1351
BbsI GAAGAC 2 cut(s) 369, 719
BbvCI CCTCAGC 1 cut(s) 1047
BccI CCATC 5 cut(s) 447, 701, 841, 920, 1273
BceAI ACGGC 2 cut(s) 395, 710
BcgI CGANNNNNNTGC 2 cut(s) 862, 896
BciT130I CCWGG 3 cut(s) 7, 332, 614
BciVI GTATCC 1 cut(s) 1408
BclI TGATCA 1 cut(s) 1233
BcnI CCSGG 2 cut(s) 402, 984
BcoDI GTCTC 2 cut(s) 332, 950
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 4 cut(s) 342, 660, 828, 1388
BfoI RGCGCY 1 cut(s) 229
BfrI CTTAAG 1 cut(s) 914
BfuAI ACCTGC 1 cut(s) 823
BfuI GTATCC 1 cut(s) 1408
Bme1390I CCNGG 5 cut(s) 7, 332, 402, 614, 984
Bme18I GGWCC 5 cut(s) 9, 376, 404, 868, 1459
BmeT110I CYCGRG 2 cut(s) 871, 1038
BmgT120I GGNCC 6 cut(s) 9, 376, 404, 868, 920, 1459
BmiI GGNNCC 9 cut(s) 405, 406, 869, 870, 921, 932, 1353, 1460, 1461
BmrFI CCNGG 5 cut(s) 7, 332, 402, 614, 984
BmrI ACTGGG 2 cut(s) 194, 1428
BmsI GCATC 4 cut(s) 502, 644, 712, 1268
BmuI ACTGGG 2 cut(s) 194, 1428
BpiI GAAGAC 2 cut(s) 369, 719
Bpu10I CCTNAGC 3 cut(s) 222, 747, 1047
BpuMI CCSGG 2 cut(s) 402, 984
Bsa29I ATCGAT 1 cut(s) 1262
BsaHI GRCGYC 2 cut(s) 25, 525
BsaI GGTCTC 1 cut(s) 950
BsaJI CCNNGG 2 cut(s) 28, 983
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 2 cut(s) 468, 1345
Bse1I ACTGG 2 cut(s) 200, 1423
Bse3DI GCAATG 3 cut(s) 820, 883, 1071
BseBI CCWGG 3 cut(s) 7, 332, 614
BseCI ATCGAT 1 cut(s) 1262
BseDI CCNNGG 2 cut(s) 28, 983
BseGI GGATG 2 cut(s) 659, 1174
BseLI CCNNNNNNNGG 2 cut(s) 468, 1345
BseMI GCAATG 3 cut(s) 820, 883, 1071
BseMII CTCAG 3 cut(s) 834, 1038, 1266
BseNI ACTGG 2 cut(s) 200, 1423
BseRI GAGGAG 2 cut(s) 33, 272
Bsh1236I CGCG 1 cut(s) 936
BshFI GGCC 4 cut(s) 299, 435, 566, 922
BshVI ATCGAT 1 cut(s) 1262
BsiHKCI CYCGRG 2 cut(s) 871, 1038
BsiSI CCGG 2 cut(s) 401, 983
BslFI GGGAC 4 cut(s) 390, 536, 881, 1445
BslI CCNNNNNNNGG 2 cut(s) 468, 1345
BsmAI GTCTC 2 cut(s) 332, 950
BsmFI GGGAC 4 cut(s) 390, 536, 881, 1445
BsnI GGCC 4 cut(s) 299, 435, 566, 922
Bso31I GGTCTC 1 cut(s) 950
BsoBI CYCGRG 2 cut(s) 871, 1038
Bsp1407I TGTACA 1 cut(s) 1179
Bsp143I GATC 7 cut(s) 273, 484, 930, 1233, 1351, 1447, 1600
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 2 cut(s) 408, 934
BspANI GGCC 4 cut(s) 299, 435, 566, 922
BspCNI CTCAG 3 cut(s) 835, 1039, 1267
BspDI ATCGAT 1 cut(s) 1262
BspFNI CGCG 1 cut(s) 936
BspLI GGNNCC 9 cut(s) 405, 406, 869, 870, 921, 932, 1353, 1460, 1461
BspMI ACCTGC 1 cut(s) 823
BspPI GGATC 4 cut(s) 925, 938, 1346, 1359
BspTI CTTAAG 1 cut(s) 914
BspTNI GGTCTC 1 cut(s) 950
BsrDI GCAATG 3 cut(s) 820, 883, 1071
BsrGI TGTACA 1 cut(s) 1179
BsrI ACTGG 2 cut(s) 200, 1423
BssECI CCNNGG 2 cut(s) 28, 983
BssMI GATC 7 cut(s) 273, 484, 930, 1233, 1351, 1447, 1600
BssNI GRCGYC 2 cut(s) 25, 525
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 3 cut(s) 7, 332, 614
Bst6I CTCTTC 3 cut(s) 58, 112, 366
BstACI GRCGYC 2 cut(s) 25, 525
BstAFI CTTAAG 1 cut(s) 914
BstAPI GCANNNNNTGC 1 cut(s) 501
BstAUI TGTACA 1 cut(s) 1179
BstC8I GCNNGC 6 cut(s) 433, 885, 1005, 1062, 1308, 1385
BstDEI CTNAG 5 cut(s) 222, 747, 843, 1047, 1275
BstDSI CCRYGG 1 cut(s) 28
BstEII GGTNACC 1 cut(s) 32
BstF5I GGATG 2 cut(s) 659, 1174
BstFNI CGCG 1 cut(s) 936
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 7 cut(s) 276, 487, 933, 1236, 1354, 1450, 1603
BstMAI GTCTC 2 cut(s) 332, 950
BstMBI GATC 7 cut(s) 273, 484, 930, 1233, 1351, 1447, 1600
BstMWI GCNNNNNNNGC 3 cut(s) 501, 572, 919
BstNI CCWGG 3 cut(s) 7, 332, 614
BstNSI RCATGY 4 cut(s) 1064, 1219, 1310, 1387
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 5 cut(s) 5, 330, 400, 612, 982
BstUI CGCG 1 cut(s) 936
BstV2I GAAGAC 2 cut(s) 369, 719
BstX2I RGATCY 2 cut(s) 930, 1351
BstYI RGATCY 2 cut(s) 930, 1351
Bsu15I ATCGAT 1 cut(s) 1262
BsuI GTATCC 1 cut(s) 1408
BsuRI GGCC 4 cut(s) 299, 435, 566, 922
BsuTUI ATCGAT 1 cut(s) 1262
BtgI CCRYGG 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 2 cut(s) 659, 1174
BtsI GCAGTG 1 cut(s) 948
BtsIMutI CAGTG 1 cut(s) 948
BveI ACCTGC 1 cut(s) 823
Cac8I GCNNGC 6 cut(s) 433, 885, 1005, 1062, 1308, 1385
CaiI CAGNNNCTG 1 cut(s) 770
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 6 cut(s) 9, 376, 404, 868, 920, 1459
ClaI ATCGAT 1 cut(s) 1262
CseI GACGC 2 cut(s) 33, 533
Csp6I GTAC 1 cut(s) 1180
CviAII CATG 7 cut(s) 29, 217, 538, 1061, 1216, 1307, 1384
CviQI GTAC 1 cut(s) 1180
DdeI CTNAG 5 cut(s) 222, 747, 843, 1047, 1275
DpnI GATC 7 cut(s) 275, 486, 932, 1235, 1353, 1449, 1602
DpnII GATC 7 cut(s) 273, 484, 930, 1233, 1351, 1447, 1600
EaeI YGGCCR 3 cut(s) 297, 433, 564
Eam1104I CTCTTC 3 cut(s) 58, 112, 366
EarI CTCTTC 3 cut(s) 58, 112, 366
Eco130I CCWWGG 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 950
Eco47I GGWCC 5 cut(s) 9, 376, 404, 868, 1459
Eco57I CTGAAG 2 cut(s) 702, 1556
Eco88I CYCGRG 2 cut(s) 871, 1038
Eco91I GGTNACC 1 cut(s) 32
EcoO109I RGGNCCY 5 cut(s) 376, 404, 868, 920, 1459
EcoO65I GGTNACC 1 cut(s) 32
EcoRI GAATTC 2 cut(s) 679, 1198
EcoRII CCWGG 3 cut(s) 5, 330, 612
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 7 cut(s) 32, 220, 541, 1064, 1219, 1310, 1387
FalI AAGNNNNNCTT 4 cut(s) 488, 520, 1553, 1585
FaqI GGGAC 4 cut(s) 390, 536, 881, 1445
FatI CATG 7 cut(s) 28, 216, 537, 1060, 1215, 1306, 1383
FauI CCCGC 1 cut(s) 415
FauNDI CATATG 2 cut(s) 778, 1210
FbaI TGATCA 1 cut(s) 1233
FokI GGATG 2 cut(s) 666, 1181
FspBI CTAG 4 cut(s) 342, 660, 828, 1388
GlaI GCGC 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 4 cut(s) 299, 435, 566, 922
HapII CCGG 2 cut(s) 401, 983
HgaI GACGC 2 cut(s) 33, 533
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 2 cut(s) 25, 525
Hin1II CATG 7 cut(s) 32, 220, 541, 1064, 1219, 1310, 1387
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 4 cut(s) 279, 893, 1034, 1503
HpaII CCGG 2 cut(s) 401, 983
Hpy166II GTNNAC 2 cut(s) 1180, 1272
Hpy188I TCNGA 7 cut(s) 126, 156, 278, 721, 844, 1197, 1452
Hpy188III TCNNGA 7 cut(s) 901, 1010, 1024, 1133, 1145, 1237, 1301
Hpy8I GTNNAC 2 cut(s) 1180, 1272
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 4 cut(s) 803, 1130, 1246, 1555
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 4 cut(s) 695, 1064, 1383, 1481
HpyF10VI GCNNNNNNNGC 3 cut(s) 501, 572, 919
HpyF3I CTNAG 5 cut(s) 222, 747, 843, 1047, 1275
HpySE526I ACGT 1 cut(s) 366
Hsp92I GRCGYC 2 cut(s) 25, 525
Hsp92II CATG 7 cut(s) 32, 220, 541, 1064, 1219, 1310, 1387
HspAI GCGC 1 cut(s) 226
KflI GGGWCCC 3 cut(s) 404, 868, 1459
Ksp22I TGATCA 1 cut(s) 1233
Kzo9I GATC 7 cut(s) 273, 484, 930, 1233, 1351, 1447, 1600
LmnI GCTCC 1 cut(s) 1043
LweI GCATC 4 cut(s) 502, 644, 712, 1268
MaeI CTAG 4 cut(s) 342, 660, 828, 1388
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 3 cut(s) 32, 352, 552
MalI GATC 7 cut(s) 275, 486, 932, 1235, 1353, 1449, 1602
MboI GATC 7 cut(s) 273, 484, 930, 1233, 1351, 1447, 1600
MboII GAAGA 9 cut(s) 45, 48, 51, 99, 132, 374, 383, 479, 724
MflI RGATCY 2 cut(s) 930, 1351
MlsI TGGCCA 3 cut(s) 299, 435, 566
MluNI TGGCCA 3 cut(s) 299, 435, 566
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 3 cut(s) 771, 1111, 1146
Mox20I TGGCCA 3 cut(s) 299, 435, 566
MroXI GAANNNNTTC 1 cut(s) 503
MscI TGGCCA 3 cut(s) 299, 435, 566
MseI TTAA 6 cut(s) 759, 915, 962, 1224, 1284, 1473
MslI CAYNNNNRTG 2 cut(s) 444, 1131
Msp20I TGGCCA 3 cut(s) 299, 435, 566
MspCI CTTAAG 1 cut(s) 914
MspI CCGG 2 cut(s) 401, 983
MspR9I CCNGG 5 cut(s) 7, 332, 402, 614, 984
MvaI CCWGG 3 cut(s) 7, 332, 614
MvnI CGCG 1 cut(s) 936
MwoI GCNNNNNNNGC 3 cut(s) 501, 572, 919
NciI CCSGG 2 cut(s) 402, 984
NcoI CCATGG 1 cut(s) 28
NdeI CATATG 2 cut(s) 778, 1210
NdeII GATC 7 cut(s) 273, 484, 930, 1233, 1351, 1447, 1600
NlaIII CATG 7 cut(s) 32, 220, 541, 1064, 1219, 1310, 1387
NlaIV GGNNCC 9 cut(s) 405, 406, 869, 870, 921, 932, 1353, 1460, 1461
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 4 cut(s) 1064, 1219, 1310, 1387
PaeI GCATGC 3 cut(s) 1064, 1310, 1387
PciI ACATGT 1 cut(s) 1215
PdmI GAANNNNTTC 1 cut(s) 503
PfeI GAWTC 3 cut(s) 893, 1034, 1503
PfoI TCCNGGA 1 cut(s) 612
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PpuMI RGGWCCY 4 cut(s) 376, 404, 868, 1459
PscI ACATGT 1 cut(s) 1215
Psp5II RGGWCCY 4 cut(s) 376, 404, 868, 1459
Psp6I CCWGG 3 cut(s) 5, 330, 612
PspEI GGTNACC 1 cut(s) 32
PspGI CCWGG 3 cut(s) 5, 330, 612
PspN4I GGNNCC 9 cut(s) 405, 406, 869, 870, 921, 932, 1353, 1460, 1461
PspPI GGNCC 6 cut(s) 9, 376, 404, 868, 920, 1459
PspPPI RGGWCCY 4 cut(s) 376, 404, 868, 1459
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 2 cut(s) 930, 1351
RsaI GTAC 1 cut(s) 1181
RsaNI GTAC 1 cut(s) 1180
RseI CAYNNNNRTG 2 cut(s) 444, 1131
SaqAI TTAA 6 cut(s) 759, 915, 962, 1224, 1284, 1473
Sau3AI GATC 7 cut(s) 273, 484, 930, 1233, 1351, 1447, 1600
Sau96I GGNCC 6 cut(s) 9, 376, 404, 868, 920, 1459
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 5 cut(s) 7, 332, 402, 614, 984
SfaNI GCATC 4 cut(s) 502, 644, 712, 1268
SinI GGWCC 5 cut(s) 9, 376, 404, 868, 1459
SmiMI CAYNNNNRTG 2 cut(s) 444, 1131
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
SpeI ACTAGT 1 cut(s) 341
SphI GCATGC 3 cut(s) 1064, 1310, 1387
SsiI CCGC 2 cut(s) 408, 934
SspMI CTAG 4 cut(s) 342, 660, 828, 1388
StyD4I CCNGG 5 cut(s) 5, 330, 400, 612, 982
StyI CCWWGG 1 cut(s) 28
TaiI ACGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 1262
TatI WGTACW 1 cut(s) 1179
TfiI GAWTC 3 cut(s) 893, 1034, 1503
Tru1I TTAA 6 cut(s) 759, 915, 962, 1224, 1284, 1473
Tru9I TTAA 6 cut(s) 759, 915, 962, 1224, 1284, 1473
TscAI CASTG 1 cut(s) 948
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 822, 885, 1593
TspRI CASTG 1 cut(s) 948
Vha464I CTTAAG 1 cut(s) 914
VpaK11BI GGWCC 5 cut(s) 9, 376, 404, 868, 1459
XapI RAATTY 4 cut(s) 679, 1198, 1423, 1514
XceI RCATGY 4 cut(s) 1064, 1219, 1310, 1387
XmnI GAANNNNTTC 1 cut(s) 503
XspI CTAG 4 cut(s) 342, 660, 828, 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.