Rmu_sc0003935.1_g000001

Pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003935.1
Physical Location & Seq
Forward (+)
1229 .. 2725
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003935.1_g000001.1.cds

Sequence Viewer

Length: 1497 bp
atgagtagaacaaagcgacaccgtgattacccacctgcttcctctccttgtcgaaaccctaatcaacccgaaccggaacccgcgaagaagcaccaccaatccgaccctacctttccctcatacctggacactcccaatcccttacctcccaaaatcaaactactgtgtgcaattgtggccgaaatccacggtcactcggtcgaagaaacgttgaacgacactggtattcgagtgagccagcaagacgttgaagaggtcctcaagctctcctacgccttcccgggccctgccctcgagttctttcggtggtccggtcttcagctcaatgaagaccacagcccatattcgtggaatctggttgttgatctcttgggcaagagttgcttctttgatgccatgtgggacaccatcaagtctatgaagcaaaaaaggttactctctttggccacttttgcttctgtttttagtagttatgtagttgcccatcgcactcccgaggctcttatgacatttgaggttatggaccaatatggtgttcctacagatattgtagcattgaattctcttttgagtgcaatttgtagagatggcaagacggccgatgcccttgatttttactacattgctaaggacaagatcaggccggaccccgatacttacgccatcttgttggaggggtgggagagtgaagggaatgtagcctcggctaccaaggttttggatgagatggtgagtcagattggttgggatccaaccaatgtgcccgcctacgattcatatctgaacactttgcttaacgggcctaatgggattcgcgaggcgctggacttctttgagaccttgaaagctaacaggtgttatccaggggtcaagtttttcaggcttgcgcttgatgagtgtgtcaagaaaggtgatgctaggggagctgaggctctttgggaggaaatggtaggcagacttggtttgcaacctgacaccaatatgtataatttgatgatttctttgcattgccatggaaacaatattaatgtagcaaaaaggatgctggatgagatggtctacaatggggcatttccaaattcgcaaacatataacatgttgtttaagatgctcattaagaataggaagttacaggaggctgccgttttgtttactgagatgattaaaaatgagtgtgttctggaccaggataattgtattgctgcagtcaggatatacttggatttgggggacccttattttgcaataaaagtctggaagtttatgatagaaaattaccgttctggcttggaggatactggtaatttgttggttctaggacttcgcaatctgaacagagtcccagaagcagtcaagtatgcagaggatatgatgctaagaggaatcaagttgagttcttcttcaatgtcaaaactcaaagacagccttgtccaagcaaagaagcaatacatgtatgatgaacttttgagaaagtcgaaagctcagcagctaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

56.41

Weight (kDa)

5.82

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014786)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
AasI GACNNNNNNGTC 1 cut(s) 1427
Acc36I ACCTGC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 1059
AccII CGCG 2 cut(s) 83, 816
AciI CCGC 2 cut(s) 81, 765
AclI AACGTT 1 cut(s) 209
AclWI GGATC 2 cut(s) 743, 756
AcoI YGGCCR 3 cut(s) 177, 444, 597
AcsI RAATTY 2 cut(s) 559, 1078
AcuI CTGAAG 1 cut(s) 302
AflIII ACRYGT 2 cut(s) 1095, 1449
AgsI TTSAA 5 cut(s) 214, 251, 559, 844, 1404
AjnI CCWGG 3 cut(s) 123, 862, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 6 cut(s) 265, 322, 848, 926, 1481, 1489
AluI AGCT 6 cut(s) 265, 322, 848, 926, 1481, 1489
Alw26I GTCTC 1 cut(s) 830
AlwI GGATC 2 cut(s) 743, 756
Ama87I CYCGRG 3 cut(s) 280, 293, 494
AoxI GGCC 6 cut(s) 177, 283, 444, 597, 641, 800
ApaI GGGCCC 1 cut(s) 287
ApeKI GCWGC 3 cut(s) 1139, 1202, 1486
ApoI RAATTY 2 cut(s) 559, 1078
ArsI GACNNNNNNTTYG 2 cut(s) 1223, 1255
AseI ATTAAT 1 cut(s) 1026
AspLEI GCGC 2 cut(s) 823, 889
AspS9I GGNCC 9 cut(s) 256, 283, 284, 309, 523, 646, 800, 1183, 1231
AsuC2I CCSGG 2 cut(s) 281, 282
AsuHPI GGTGA 2 cut(s) 742, 923
AvaI CYCGRG 3 cut(s) 280, 293, 494
AvaII GGWCC 6 cut(s) 256, 309, 523, 646, 1183, 1231
BaeGI GKGCMC 2 cut(s) 287, 765
BalI TGGCCA 1 cut(s) 446
BamHI GGATCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 2 cut(s) 308, 336
BbvCI CCTCAGC 1 cut(s) 927
BbvI GCAGC 2 cut(s) 1126, 1189
BccI CCATC 6 cut(s) 416, 492, 581, 671, 721, 1048
BceAI ACGGC 2 cut(s) 612, 1127
BciT130I CCWGG 3 cut(s) 125, 864, 1187
BciVI GTATCC 1 cut(s) 1288
BcnI CCSGG 2 cut(s) 281, 282
BcoDI GTCTC 1 cut(s) 830
BfaI CTAG 3 cut(s) 918, 1316, 1490
BfmI CTRYAG 2 cut(s) 540, 1203
BfoI RGCGCY 1 cut(s) 824
BfuAI ACCTGC 1 cut(s) 43
BfuI GTATCC 1 cut(s) 1288
BisI GCNGC 3 cut(s) 1140, 1203, 1487
BlpI GCTNAGC 1 cut(s) 1482
BlsI GCNGC 3 cut(s) 1141, 1204, 1488
Bme1390I CCNGG 5 cut(s) 125, 281, 282, 864, 1187
Bme18I GGWCC 6 cut(s) 256, 309, 523, 646, 1183, 1231
BmeT110I CYCGRG 3 cut(s) 280, 293, 494
BmgT120I GGNCC 9 cut(s) 256, 283, 284, 309, 523, 646, 800, 1183, 1231
BmiI GGNNCC 6 cut(s) 78, 285, 648, 750, 1232, 1233
BmrFI CCNGG 5 cut(s) 125, 281, 282, 864, 1187
BmsI GCATC 6 cut(s) 382, 592, 904, 1032, 1098, 1362
BpiI GAAGAC 2 cut(s) 308, 336
Bpu10I CCTNAGC 2 cut(s) 627, 927
Bpu1102I GCTNAGC 1 cut(s) 1482
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 281, 282
BsaBI GATNNNNATC 1 cut(s) 777
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 7 cut(s) 187, 280, 495, 702, 711, 863, 1012
BsaWI WCCGGW 2 cut(s) 73, 311
Bse1I ACTGG 2 cut(s) 226, 1303
Bse3DI GCAATG 2 cut(s) 621, 1006
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 3 cut(s) 125, 864, 1187
BseDI CCNNGG 7 cut(s) 187, 280, 495, 702, 711, 863, 1012
BseGI GGATG 3 cut(s) 727, 1047, 1054
BseJI GATNNNNATC 1 cut(s) 777
BseMI GCAATG 2 cut(s) 621, 1006
BseMII CTCAG 3 cut(s) 918, 1146, 1496
BseNI ACTGG 2 cut(s) 226, 1303
BseSI GKGCMC 2 cut(s) 287, 765
BseX3I CGGCCG 1 cut(s) 597
BseXI GCAGC 2 cut(s) 1126, 1189
Bsh1236I CGCG 2 cut(s) 83, 816
Bsh1285I CGRYCG 2 cut(s) 201, 600
BshFI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
BsiEI CGRYCG 2 cut(s) 201, 600
BsiHKCI CYCGRG 3 cut(s) 280, 293, 494
BsiSI CCGG 4 cut(s) 74, 281, 312, 644
BslFI GGGAC 3 cut(s) 416, 1244, 1325
BsmAI GTCTC 1 cut(s) 830
BsmFI GGGAC 3 cut(s) 416, 1244, 1325
BsnI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
Bso31I GGTCTC 1 cut(s) 830
BsoBI CYCGRG 3 cut(s) 280, 293, 494
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 287, 765
Bsp143I GATC 3 cut(s) 364, 636, 748
Bsp1720I GCTNAGC 1 cut(s) 1482
Bsp19I CCATGG 1 cut(s) 1012
Bsp68I TCGCGA 1 cut(s) 816
BspACI CCGC 2 cut(s) 81, 765
BspANI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
BspCNI CTCAG 3 cut(s) 919, 1147, 1495
BspFNI CGCG 2 cut(s) 83, 816
BspLI GGNNCC 6 cut(s) 78, 285, 648, 750, 1232, 1233
BspMAI CTGCAG 1 cut(s) 1207
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 743, 756
BspTNI GGTCTC 1 cut(s) 830
BsrDI GCAATG 2 cut(s) 621, 1006
BsrI ACTGG 2 cut(s) 226, 1303
BssECI CCNNGG 7 cut(s) 187, 280, 495, 702, 711, 863, 1012
BssMI GATC 3 cut(s) 364, 636, 748
BssT1I CCWWGG 2 cut(s) 711, 1012
Bst2UI CCWGG 3 cut(s) 125, 864, 1187
Bst4CI ACNGT 4 cut(s) 23, 165, 191, 1280
Bst6I CTCTTC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 381
BstC8I GCNNGC 3 cut(s) 239, 765, 885
BstDEI CTNAG 5 cut(s) 627, 927, 1155, 1376, 1482
BstDSI CCRYGG 2 cut(s) 187, 1012
BstF5I GGATG 3 cut(s) 727, 1047, 1054
BstFNI CGCG 2 cut(s) 83, 816
BstH2I RGCGCY 1 cut(s) 824
BstHHI GCGC 2 cut(s) 823, 889
BstKTI GATC 3 cut(s) 367, 639, 751
BstMAI GTCTC 1 cut(s) 830
BstMBI GATC 3 cut(s) 364, 636, 748
BstMCI CGRYCG 2 cut(s) 201, 600
BstMWI GCNNNNNNNGC 5 cut(s) 176, 381, 452, 799, 923
BstNI CCWGG 3 cut(s) 125, 864, 1187
BstNSI RCATGY 2 cut(s) 1099, 1453
BstSCI CCNGG 5 cut(s) 123, 279, 280, 862, 1185
BstSFI CTRYAG 2 cut(s) 540, 1203
BstSLI GKGCMC 2 cut(s) 287, 765
BstUI CGCG 2 cut(s) 83, 816
BstV1I GCAGC 2 cut(s) 1126, 1189
BstV2I GAAGAC 2 cut(s) 308, 336
BstX2I RGATCY 1 cut(s) 748
BstXI CCANNNNNNTGG 3 cut(s) 348, 670, 718
BstYI RGATCY 1 cut(s) 748
BstZI CGGCCG 1 cut(s) 597
BsuI GTATCC 1 cut(s) 1288
BsuRI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
BtgI CCRYGG 2 cut(s) 187, 1012
BtgZI GCGATG 1 cut(s) 470
BtsCI GGATG 3 cut(s) 727, 1047, 1054
BtsIMutI CAGTG 1 cut(s) 219
BtuMI TCGCGA 1 cut(s) 816
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 3 cut(s) 239, 765, 885
CfoI GCGC 2 cut(s) 823, 889
Cfr13I GGNCC 9 cut(s) 256, 283, 284, 309, 523, 646, 800, 1183, 1231
Cfr9I CCCGGG 1 cut(s) 280
CviAII CATG 4 cut(s) 397, 1013, 1096, 1450
DdeI CTNAG 5 cut(s) 627, 927, 1155, 1376, 1482
DpnI GATC 3 cut(s) 366, 638, 750
DpnII GATC 3 cut(s) 364, 636, 748
DrdI GACNNNNNNGTC 1 cut(s) 1427
DseDI GACNNNNNNGTC 1 cut(s) 1427
EaeI YGGCCR 3 cut(s) 177, 444, 597
EagI CGGCCG 1 cut(s) 597
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
EclXI CGGCCG 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 711, 1012
Eco24I GRGCYC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 830
Eco47I GGWCC 6 cut(s) 256, 309, 523, 646, 1183, 1231
Eco52I CGGCCG 1 cut(s) 597
Eco57I CTGAAG 1 cut(s) 302
Eco88I CYCGRG 3 cut(s) 280, 293, 494
EcoO109I RGGNCCY 3 cut(s) 256, 284, 1231
EcoRI GAATTC 1 cut(s) 559
EcoRII CCWGG 3 cut(s) 123, 862, 1185
EcoT14I CCWWGG 2 cut(s) 711, 1012
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 2 cut(s) 711, 1012
FaeI CATG 4 cut(s) 400, 1016, 1099, 1453
FalI AAGNNNNNCTT 4 cut(s) 368, 400, 1410, 1442
FaqI GGGAC 3 cut(s) 416, 1244, 1325
FatI CATG 4 cut(s) 396, 1012, 1095, 1449
FauI CCCGC 2 cut(s) 88, 772
FblI GTMKAC 1 cut(s) 1059
Fnu4HI GCNGC 3 cut(s) 1140, 1203, 1487
FokI GGATG 3 cut(s) 734, 1054, 1061
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 3 cut(s) 1140, 1203, 1487
FspBI CTAG 3 cut(s) 918, 1316, 1490
GlaI GCGC 2 cut(s) 822, 888
GluI GCNGC 3 cut(s) 1140, 1203, 1487
HaeII RGCGCY 1 cut(s) 824
HaeIII GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
HapII CCGG 4 cut(s) 74, 281, 312, 644
HhaI GCGC 2 cut(s) 823, 889
Hin1II CATG 4 cut(s) 400, 1016, 1099, 1453
Hin6I GCGC 2 cut(s) 821, 887
HinP1I GCGC 2 cut(s) 821, 887
HinfI GANTC 6 cut(s) 352, 733, 773, 811, 1338, 1383
HpaII CCGG 4 cut(s) 74, 281, 312, 644
HphI GGTGA 2 cut(s) 742, 923
Hpy166II GTNNAC 2 cut(s) 1060, 1152
Hpy188I TCNGA 4 cut(s) 103, 738, 783, 1332
Hpy188III TCNNGA 6 cut(s) 494, 815, 904, 1181, 1210, 1255
Hpy8I GTNNAC 2 cut(s) 1060, 1152
HpyAV CCTTC 2 cut(s) 286, 683
HpyCH4III ACNGT 4 cut(s) 23, 165, 191, 1280
HpyCH4IV ACGT 2 cut(s) 209, 246
HpyCH4V TGCA 7 cut(s) 170, 575, 967, 1006, 1205, 1244, 1361
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 381, 452, 799, 923
HpyF3I CTNAG 5 cut(s) 627, 927, 1155, 1376, 1482
HpySE526I ACGT 2 cut(s) 209, 246
Hsp92II CATG 4 cut(s) 400, 1016, 1099, 1453
HspAI GCGC 2 cut(s) 821, 887
KflI GGGWCCC 1 cut(s) 1231
Kzo9I GATC 3 cut(s) 364, 636, 748
LmnI GCTCC 1 cut(s) 923
Lsp1109I GCAGC 2 cut(s) 1126, 1189
LweI GCATC 6 cut(s) 382, 592, 904, 1032, 1098, 1362
MaeI CTAG 3 cut(s) 918, 1316, 1490
MaeII ACGT 2 cut(s) 209, 246
MaeIII GTNAC 3 cut(s) 191, 432, 1128
MalI GATC 3 cut(s) 366, 638, 750
MboI GATC 3 cut(s) 364, 636, 748
MboII GAAGA 7 cut(s) 97, 215, 263, 308, 341, 1389, 1392
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 2 cut(s) 287, 765
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 8 cut(s) 171, 559, 576, 988, 1078, 1192, 1273, 1303
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 2 cut(s) 742, 1347
MmeI TCCRAC 3 cut(s) 126, 651, 776
Mox20I TGGCCA 1 cut(s) 446
MscI TGGCCA 1 cut(s) 446
MseI TTAA 6 cut(s) 795, 1026, 1104, 1116, 1164, 1495
MslI CAYNNNNRTG 3 cut(s) 346, 980, 1011
Msp20I TGGCCA 1 cut(s) 446
MspI CCGG 4 cut(s) 74, 281, 312, 644
MspR9I CCNGG 5 cut(s) 125, 281, 282, 864, 1187
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 3 cut(s) 125, 864, 1187
MvnI CGCG 2 cut(s) 83, 816
MwoI GCNNNNNNNGC 5 cut(s) 176, 381, 452, 799, 923
NciI CCSGG 2 cut(s) 281, 282
NcoI CCATGG 1 cut(s) 1012
NdeII GATC 3 cut(s) 364, 636, 748
NlaIII CATG 4 cut(s) 400, 1016, 1099, 1453
NlaIV GGNNCC 6 cut(s) 78, 285, 648, 750, 1232, 1233
NmeAIII GCCGAG 1 cut(s) 683
NmuCI GTSAC 1 cut(s) 191
NruI TCGCGA 1 cut(s) 816
NspI RCATGY 2 cut(s) 1099, 1453
PaeR7I CTCGAG 1 cut(s) 293
PaqCI CACCTGC 1 cut(s) 43
PciI ACATGT 2 cut(s) 1095, 1449
PfeI GAWTC 4 cut(s) 352, 773, 811, 1383
PkrI GCNGC 3 cut(s) 1141, 1204, 1488
PleI GAGTC 2 cut(s) 741, 1346
PpsI GAGTC 2 cut(s) 741, 1346
PpuMI RGGWCCY 2 cut(s) 256, 1231
PscI ACATGT 2 cut(s) 1095, 1449
PshBI ATTAAT 1 cut(s) 1026
Psp1406I AACGTT 1 cut(s) 209
Psp5II RGGWCCY 2 cut(s) 256, 1231
Psp6I CCWGG 3 cut(s) 123, 862, 1185
PspGI CCWGG 3 cut(s) 123, 862, 1185
PspN4I GGNNCC 6 cut(s) 78, 285, 648, 750, 1232, 1233
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 9 cut(s) 256, 283, 284, 309, 523, 646, 800, 1183, 1231
PspPPI RGGWCCY 2 cut(s) 256, 1231
PspXI VCTCGAGB 1 cut(s) 293
PstI CTGCAG 1 cut(s) 1207
PsuI RGATCY 1 cut(s) 748
RruI TCGCGA 1 cut(s) 816
RseI CAYNNNNRTG 3 cut(s) 346, 980, 1011
SaqAI TTAA 6 cut(s) 795, 1026, 1104, 1116, 1164, 1495
SatI GCNGC 3 cut(s) 1140, 1203, 1487
Sau3AI GATC 3 cut(s) 364, 636, 748
Sau96I GGNCC 9 cut(s) 256, 283, 284, 309, 523, 646, 800, 1183, 1231
SchI GAGTC 2 cut(s) 742, 1347
ScrFI CCNGG 5 cut(s) 125, 281, 282, 864, 1187
SduI GDGCHC 2 cut(s) 287, 765
SfaNI GCATC 6 cut(s) 382, 592, 904, 1032, 1098, 1362
SfcI CTRYAG 2 cut(s) 540, 1203
Sfr274I CTCGAG 1 cut(s) 293
SinI GGWCC 6 cut(s) 256, 309, 523, 646, 1183, 1231
SlaI CTCGAG 1 cut(s) 293
SmaI CCCGGG 1 cut(s) 282
SmiMI CAYNNNNRTG 3 cut(s) 346, 980, 1011
SmlI CTYRAG 2 cut(s) 260, 293
SmoI CTYRAG 2 cut(s) 260, 293
Sse9I AATT 8 cut(s) 171, 559, 576, 988, 1078, 1192, 1273, 1303
SsiI CCGC 2 cut(s) 81, 765
SspI AATATT 1 cut(s) 1024
SspMI CTAG 3 cut(s) 918, 1316, 1490
StyD4I CCNGG 5 cut(s) 123, 279, 280, 862, 1185
StyI CCWWGG 2 cut(s) 711, 1012
TaaI ACNGT 4 cut(s) 23, 165, 191, 1280
TaiI ACGT 2 cut(s) 212, 249
TaqI TCGA 5 cut(s) 52, 201, 229, 294, 1475
TaqII GACCGA 1 cut(s) 187
TasI AATT 8 cut(s) 171, 559, 576, 988, 1078, 1192, 1273, 1303
TfiI GAWTC 4 cut(s) 352, 773, 811, 1383
Tru1I TTAA 6 cut(s) 795, 1026, 1104, 1116, 1164, 1495
Tru9I TTAA 6 cut(s) 795, 1026, 1104, 1116, 1164, 1495
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 3 cut(s) 1139, 1202, 1486
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 4 cut(s) 342, 434, 765, 1473
TspMI CCCGGG 1 cut(s) 280
TspRI CASTG 1 cut(s) 226
VpaK11BI GGWCC 6 cut(s) 256, 309, 523, 646, 1183, 1231
VspI ATTAAT 1 cut(s) 1026
XapI RAATTY 2 cut(s) 559, 1078
XceI RCATGY 2 cut(s) 1099, 1453
XhoI CTCGAG 1 cut(s) 293
XmaI CCCGGG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 1059
XspI CTAG 3 cut(s) 918, 1316, 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.