Rmu_co8321897.1_g000001

Pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8321897.1
OG0014786
Physical Location & Seq
Forward (+)
137 .. 950
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8321897.1_g000001.1.cds

Sequence Viewer

Length: 814 bp
atgagtagaacaaagcgacaccgtgattacccacctgcttcctctccttgtcgaaaccctaatcaacccgaacccgaacccgcgaagaagcaccaccaatccgaccctacctttccctcatacctggacactcccaatcccttacctcccaaaatcaaactactgtgtgcaattgtggccgaaatccacggtcactcggtcgaagaaacgttgaacgacactggtattcgagtgacccagcaagacgttgaagaggtcctcaagctctcctacgccttcccgggccctgccctcgagttctttcggtggtccggtcttcagctcaatgaagaccacagcccatattcgtggaatctggttgttgatctcttgggcaagagttgcttctttgatgccatgtgggacaccatcaagtctatgaagcaaaaaaggttactctctttggccacttttgcttctgtttttagtagttatgtagttgcccatcgcactcccgaggctcttatgacatttgaggttatggaccaatatggtgttcctacagatattgtagcattgaattctcttttgagtgcaatttgtagagatggcaagacggccgatgcccttgatttttactacattgctaaggacaagatcaggccggaccccgatacttacgccatcttgttggaggggtgggagagtgaagggaatgtagcctcggctaccaaggttttggatgagatggtgagtcagattggttgggatccaaccaatgtgcccgcctacgattcatatctgaacactttgcttaacgggcctaatgggattc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

271

Amino Acids

30.34

Weight (kDa)

5.06

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014786)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g03480
malus_domestica MD09G1262300.v1.1
prunus_persica Prupe.3G160100_v2.0.a1
pyrus_communis pycom09g17670
rosa_chinensis RchiOBHm_Chr3g0493431
rosa_laevigata RLG00000022714
rosa_multiflora Rmu_co8321897.1_g000001 Rmu_sc0003935.1_g000001 Rmu_sc0019660.1_g000001
rosa_roxburghii Rroxscaffold_6G00391590
rosa_rugosa Rorug03G0261000
rosa_samantha Rh3AG310100 Rh3BG346200 Rh3CG343800 Rh3DG345200
rosa_wichuraiana Rw0G011150 Rw3G027240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AccII CGCG 1 cut(s) 83
AciI CCGC 2 cut(s) 81, 765
AclI AACGTT 1 cut(s) 209
AclWI GGATC 2 cut(s) 743, 756
AcoI YGGCCR 3 cut(s) 177, 444, 597
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 302
AgsI TTSAA 3 cut(s) 214, 251, 559
AjnI CCWGG 1 cut(s) 123
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 2 cut(s) 265, 322
AluI AGCT 2 cut(s) 265, 322
AlwI GGATC 2 cut(s) 743, 756
Ama87I CYCGRG 3 cut(s) 280, 293, 494
AoxI GGCC 6 cut(s) 177, 283, 444, 597, 641, 800
ApaI GGGCCC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 559
AspS9I GGNCC 7 cut(s) 256, 283, 284, 309, 523, 646, 800
AsuC2I CCSGG 2 cut(s) 281, 282
AsuHPI GGTGA 1 cut(s) 742
AvaI CYCGRG 3 cut(s) 280, 293, 494
AvaII GGWCC 4 cut(s) 256, 309, 523, 646
BaeGI GKGCMC 2 cut(s) 287, 765
BalI TGGCCA 1 cut(s) 446
BamHI GGATCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 2 cut(s) 308, 336
BccI CCATC 5 cut(s) 416, 492, 581, 671, 721
BceAI ACGGC 1 cut(s) 612
BciT130I CCWGG 1 cut(s) 125
BcnI CCSGG 2 cut(s) 281, 282
BfmI CTRYAG 1 cut(s) 540
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 3 cut(s) 125, 281, 282
Bme18I GGWCC 4 cut(s) 256, 309, 523, 646
BmeT110I CYCGRG 3 cut(s) 280, 293, 494
BmgT120I GGNCC 7 cut(s) 256, 283, 284, 309, 523, 646, 800
BmiI GGNNCC 3 cut(s) 285, 648, 750
BmrFI CCNGG 3 cut(s) 125, 281, 282
BmsI GCATC 2 cut(s) 382, 592
BpiI GAAGAC 2 cut(s) 308, 336
Bpu10I CCTNAGC 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 281, 282
BsaBI GATNNNNATC 1 cut(s) 777
BsaJI CCNNGG 5 cut(s) 187, 280, 495, 702, 711
BsaWI WCCGGW 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 1 cut(s) 621
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 5 cut(s) 187, 280, 495, 702, 711
BseGI GGATG 1 cut(s) 727
BseJI GATNNNNATC 1 cut(s) 777
BseMI GCAATG 1 cut(s) 621
BseNI ACTGG 1 cut(s) 226
BseSI GKGCMC 2 cut(s) 287, 765
BseX3I CGGCCG 1 cut(s) 597
BseYI CCCAGC 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 2 cut(s) 201, 600
BshFI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
BsiEI CGRYCG 2 cut(s) 201, 600
BsiHKCI CYCGRG 3 cut(s) 280, 293, 494
BsiSI CCGG 3 cut(s) 281, 312, 644
BslFI GGGAC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
BsoBI CYCGRG 3 cut(s) 280, 293, 494
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 287, 765
Bsp143I GATC 3 cut(s) 364, 636, 748
BspACI CCGC 2 cut(s) 81, 765
BspANI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 3 cut(s) 285, 648, 750
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 743, 756
BsrDI GCAATG 1 cut(s) 621
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 5 cut(s) 187, 280, 495, 702, 711
BssMI GATC 3 cut(s) 364, 636, 748
BssT1I CCWWGG 1 cut(s) 711
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 3 cut(s) 23, 165, 191
Bst6I CTCTTC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 765
BstDEI CTNAG 1 cut(s) 627
BstDSI CCRYGG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 727
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 3 cut(s) 367, 639, 751
BstMBI GATC 3 cut(s) 364, 636, 748
BstMCI CGRYCG 2 cut(s) 201, 600
BstMWI GCNNNNNNNGC 4 cut(s) 176, 381, 452, 799
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 123, 279, 280
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 2 cut(s) 287, 765
BstUI CGCG 1 cut(s) 83
BstV2I GAAGAC 2 cut(s) 308, 336
BstX2I RGATCY 1 cut(s) 748
BstXI CCANNNNNNTGG 3 cut(s) 348, 670, 718
BstYI RGATCY 1 cut(s) 748
BstZI CGGCCG 1 cut(s) 597
BsuRI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
BtgI CCRYGG 1 cut(s) 187
BtgZI GCGATG 1 cut(s) 470
BtsCI GGATG 1 cut(s) 727
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 765
Cfr13I GGNCC 7 cut(s) 256, 283, 284, 309, 523, 646, 800
Cfr9I CCCGGG 1 cut(s) 280
CviAII CATG 1 cut(s) 397
DdeI CTNAG 1 cut(s) 627
DpnI GATC 3 cut(s) 366, 638, 750
DpnII GATC 3 cut(s) 364, 636, 748
EaeI YGGCCR 3 cut(s) 177, 444, 597
EagI CGGCCG 1 cut(s) 597
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
EclXI CGGCCG 1 cut(s) 597
Eco130I CCWWGG 1 cut(s) 711
Eco24I GRGCYC 1 cut(s) 287
Eco47I GGWCC 4 cut(s) 256, 309, 523, 646
Eco52I CGGCCG 1 cut(s) 597
Eco57I CTGAAG 1 cut(s) 302
Eco88I CYCGRG 3 cut(s) 280, 293, 494
EcoO109I RGGNCCY 2 cut(s) 256, 284
EcoRI GAATTC 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 711
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 711
FaeI CATG 1 cut(s) 400
FaiI YATR 9 cut(s) 121, 343, 398, 419, 474, 506, 521, 531, 778
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 1 cut(s) 416
FatI CATG 1 cut(s) 396
FauI CCCGC 2 cut(s) 88, 772
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 1 cut(s) 287
GsaI CCCAGC 1 cut(s) 241
HaeIII GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
HapII CCGG 3 cut(s) 281, 312, 644
Hin1II CATG 1 cut(s) 400
HinfI GANTC 4 cut(s) 352, 733, 773, 811
HpaII CCGG 3 cut(s) 281, 312, 644
HphI GGTGA 1 cut(s) 742
Hpy188I TCNGA 3 cut(s) 103, 738, 783
Hpy188III TCNNGA 1 cut(s) 494
HpyAV CCTTC 2 cut(s) 286, 683
HpyCH4III ACNGT 3 cut(s) 23, 165, 191
HpyCH4IV ACGT 2 cut(s) 209, 246
HpyCH4V TGCA 2 cut(s) 170, 575
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 381, 452, 799
HpyF3I CTNAG 1 cut(s) 627
HpySE526I ACGT 2 cut(s) 209, 246
Hsp92II CATG 1 cut(s) 400
Kzo9I GATC 3 cut(s) 364, 636, 748
LweI GCATC 2 cut(s) 382, 592
MaeII ACGT 2 cut(s) 209, 246
MaeIII GTNAC 3 cut(s) 191, 232, 432
MalI GATC 3 cut(s) 366, 638, 750
MboI GATC 3 cut(s) 364, 636, 748
MboII GAAGA 5 cut(s) 97, 215, 263, 308, 341
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 2 cut(s) 287, 765
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 3 cut(s) 171, 559, 576
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 1 cut(s) 742
MmeI TCCRAC 3 cut(s) 126, 651, 776
Mox20I TGGCCA 1 cut(s) 446
MscI TGGCCA 1 cut(s) 446
MseI TTAA 1 cut(s) 795
MslI CAYNNNNRTG 1 cut(s) 346
Msp20I TGGCCA 1 cut(s) 446
MspI CCGG 3 cut(s) 281, 312, 644
MspR9I CCNGG 3 cut(s) 125, 281, 282
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 176, 381, 452, 799
NciI CCSGG 2 cut(s) 281, 282
NdeII GATC 3 cut(s) 364, 636, 748
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 3 cut(s) 285, 648, 750
NmeAIII GCCGAG 1 cut(s) 683
NmuCI GTSAC 2 cut(s) 191, 232
PaeR7I CTCGAG 1 cut(s) 293
PaqCI CACCTGC 1 cut(s) 43
PfeI GAWTC 3 cut(s) 352, 773, 811
PleI GAGTC 1 cut(s) 741
PpsI GAGTC 1 cut(s) 741
PpuMI RGGWCCY 1 cut(s) 256
Psp1406I AACGTT 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 237
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 3 cut(s) 285, 648, 750
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 7 cut(s) 256, 283, 284, 309, 523, 646, 800
PspPPI RGGWCCY 1 cut(s) 256
PspXI VCTCGAGB 1 cut(s) 293
PsuI RGATCY 1 cut(s) 748
RseI CAYNNNNRTG 1 cut(s) 346
SaqAI TTAA 1 cut(s) 795
Sau3AI GATC 3 cut(s) 364, 636, 748
Sau96I GGNCC 7 cut(s) 256, 283, 284, 309, 523, 646, 800
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 3 cut(s) 125, 281, 282
SduI GDGCHC 2 cut(s) 287, 765
SfaNI GCATC 2 cut(s) 382, 592
SfcI CTRYAG 1 cut(s) 540
Sfr274I CTCGAG 1 cut(s) 293
SinI GGWCC 4 cut(s) 256, 309, 523, 646
SlaI CTCGAG 1 cut(s) 293
SmaI CCCGGG 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 346
SmlI CTYRAG 2 cut(s) 260, 293
SmoI CTYRAG 2 cut(s) 260, 293
Sse9I AATT 3 cut(s) 171, 559, 576
SsiI CCGC 2 cut(s) 81, 765
StyD4I CCNGG 3 cut(s) 123, 279, 280
StyI CCWWGG 1 cut(s) 711
TaaI ACNGT 3 cut(s) 23, 165, 191
TaiI ACGT 2 cut(s) 212, 249
TaqI TCGA 4 cut(s) 52, 201, 229, 294
TaqII GACCGA 1 cut(s) 187
TasI AATT 3 cut(s) 171, 559, 576
TfiI GAWTC 3 cut(s) 352, 773, 811
Tru1I TTAA 1 cut(s) 795
Tru9I TTAA 1 cut(s) 795
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 2 cut(s) 191, 232
Tsp45I GTSAC 2 cut(s) 191, 232
TspDTI ATGAA 3 cut(s) 342, 434, 765
TspMI CCCGGG 1 cut(s) 280
TspRI CASTG 1 cut(s) 226
VpaK11BI GGWCC 4 cut(s) 256, 309, 523, 646
XapI RAATTY 1 cut(s) 559
XhoI CTCGAG 1 cut(s) 293
XmaI CCCGGG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.