Rw3G027240

Pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0014786
Physical Location & Seq
Reverse (-)
38344564 .. 38346499
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G027240.1

Sequence Viewer

Length: 1509 bp
ATGAGCAGAACAAAGCGACACCGTGATTACCCACCTGCTTCCTCTCCTTGTCGAAACCCTAATCAACCCAAACCCAAACCCGAACCGGAACCCGCGAAGAAGCACCACCAATCCGACCCTACCTTTCCCTCATACCTGGACACTCCCAATCCCTTACCTCCCAAAATCAAACTACTGTGTGCAATTGTGGCCGAAATCCACTGTCACTCGGTCGAAGAAACGTTGAACGACACCGGTATTCGAGTGACCCAGCAAGACGTTGAAGAGGTCCTCAAGCTTTCCTACGCCTTCCCGGGCTCTGCCCTCAAGTTCTTTCGGTGGTCCGGTCTTCAGCTCAATGAAGACCACAGCCCATATTCGTGGAATCTGGTTGTTGATCTCTTGGGCAAGAATTGCTTCTTTGATGCCATGTGGGACGCCATCAAGTCTATGAAGCAAGAAAGGTTACTCTCTTTGGCCACTTTTGCTTCTGTTTTTAGTAGTTATGTAGTTGCCCATCGCACTCCCGAGGCTCTTATGACATTTGAGGTTATGGACCAATATGGTGTTCCTACAGATATTGTAGCATTGAATTCTCTTTTGAGTGCAATTTGTAGAGATGGCAAGACGGCCGACGCCCTTGATTTTTACTACATTGCTAAGGACAAGATCAGGCCGGACCCCGATACTTACGCCATCTTGTTGGAGGGGTGGGAGAGTGAAGGGAATGTAGCCTCTGCTACCAAGGTTTTGGATGAGATGGTGAGTCAGATTGGTTGGGATCCAACCAATGTGCCCGCCTACGATTCATATCTGAACACTTTGCTTAACGGGCCTAATGGGATTCGCGAGGCGCTGGACTTCTTTGAGACCTTGAAAGCTAAGAGGTGTTATCCAGGGGTCAAGTTTTTCAGGCTTGCGCTTGATGAGTGTGTCAAGAAAGGCGATGCTAGGGGAGCTGAGGCTCTTTGGGAGGCAATGGTAGGCAGACTTGGTTTGCAACCTGACACCAATGTGTATAATTTGATGATTTCTTTGCATTGCCATGGAAACAATATTAATGTAGCAAAAGGGATGCTGGATGAGATGGTCTACAATGGGGCATTTCCAAATTCGCAAACATATAACATGTTGTTTAAGATGCTCATTAAGAATAGGAAGTTACAGGAGGCTGCCGTTTTGTTTACTGAGATGATTAAAAATGAGTGTGTTCTGGACCAGGATAATTGTATTGCTGCAGTCAGGATATACTTGGATTTGGGGGACCCTTATTTTGCAATAAAAGTCTGGAAGTTTATGATAGAAAATTACCGTTCTGGCTTGGAGGATACTGGTAATCTGTTGGTTCTAGGACTTCGCAATCTGAACAGAGTCCCAGAAGCAGTCAAGTATGCAGAGGATATGATGCTAAGAGGCATCAAGTTGAGTTCTTCTTCAATGTCAAAACTCAAAGACAGCCTTGTCCAAGCAAAGAAGCAATACATGTATGATGAACTTTTGAGAAAGTCGAAAGCTCAGCAGCTAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

502

Amino Acids

56.73

Weight (kDa)

6.19

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 328 - 376 3.2e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014786)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g03480
malus_domestica MD09G1262300.v1.1
prunus_persica Prupe.3G160100_v2.0.a1
pyrus_communis pycom09g17670
rosa_chinensis RchiOBHm_Chr3g0493431
rosa_laevigata RLG00000022714
rosa_multiflora Rmu_co8321897.1_g000001 Rmu_sc0003935.1_g000001 Rmu_sc0019660.1_g000001
rosa_roxburghii Rroxscaffold_6G00391590
rosa_rugosa Rorug03G0261000
rosa_samantha Rh3AG310100 Rh3BG346200 Rh3CG343800 Rh3DG345200
rosa_wichuraiana Rw0G011150 Rw3G027240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
AasI GACNNNNNNGTC 1 cut(s) 1439
Acc36I ACCTGC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 1071
AccII CGCG 2 cut(s) 95, 828
AciI CCGC 2 cut(s) 93, 777
AclI AACGTT 1 cut(s) 221
AclWI GGATC 2 cut(s) 755, 768
AcoI YGGCCR 3 cut(s) 189, 456, 609
AcsI RAATTY 2 cut(s) 571, 1090
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 2 cut(s) 417, 615
AflIII ACRYGT 2 cut(s) 1107, 1461
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 5 cut(s) 226, 263, 571, 856, 1416
AjnI CCWGG 3 cut(s) 135, 874, 1197
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
AleI CACNNNNGTG 1 cut(s) 992
AluBI AGCT 6 cut(s) 277, 334, 860, 938, 1493, 1501
AluI AGCT 6 cut(s) 277, 334, 860, 938, 1493, 1501
Alw26I GTCTC 1 cut(s) 842
AlwI GGATC 2 cut(s) 755, 768
Ama87I CYCGRG 2 cut(s) 292, 506
AoxI GGCC 5 cut(s) 189, 456, 609, 653, 812
ApeKI GCWGC 3 cut(s) 1151, 1214, 1498
ApoI RAATTY 2 cut(s) 571, 1090
ArsI GACNNNNNNTTYG 2 cut(s) 1235, 1267
AseI ATTAAT 1 cut(s) 1038
AsiGI ACCGGT 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 2 cut(s) 835, 901
AspS9I GGNCC 7 cut(s) 268, 321, 535, 658, 812, 1195, 1243
AsuC2I CCSGG 2 cut(s) 293, 294
AsuHPI GGTGA 1 cut(s) 754
AvaI CYCGRG 2 cut(s) 292, 506
AvaII GGWCC 6 cut(s) 268, 321, 535, 658, 1195, 1243
BaeGI GKGCMC 1 cut(s) 777
BalI TGGCCA 1 cut(s) 458
BamHI GGATCC 1 cut(s) 760
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 2 cut(s) 320, 348
BbvCI CCTCAGC 1 cut(s) 939
BbvI GCAGC 2 cut(s) 1138, 1201
BccI CCATC 6 cut(s) 428, 504, 593, 683, 733, 1060
BceAI ACGGC 2 cut(s) 624, 1139
BciT130I CCWGG 3 cut(s) 137, 876, 1199
BciVI GTATCC 1 cut(s) 1300
BcnI CCSGG 2 cut(s) 293, 294
BcoDI GTCTC 1 cut(s) 842
BfaI CTAG 3 cut(s) 930, 1328, 1502
BfmI CTRYAG 2 cut(s) 552, 1215
BfoI RGCGCY 1 cut(s) 836
BfuAI ACCTGC 1 cut(s) 43
BfuI GTATCC 1 cut(s) 1300
BisI GCNGC 3 cut(s) 1152, 1215, 1499
BlpI GCTNAGC 1 cut(s) 1494
BlsI GCNGC 3 cut(s) 1153, 1216, 1500
Bme1390I CCNGG 5 cut(s) 137, 293, 294, 876, 1199
Bme18I GGWCC 6 cut(s) 268, 321, 535, 658, 1195, 1243
BmeT110I CYCGRG 2 cut(s) 292, 506
BmgT120I GGNCC 7 cut(s) 268, 321, 535, 658, 812, 1195, 1243
BmiI GGNNCC 5 cut(s) 90, 660, 762, 1244, 1245
BmrFI CCNGG 5 cut(s) 137, 293, 294, 876, 1199
BmsI GCATC 6 cut(s) 394, 916, 1044, 1110, 1374, 1404
BpiI GAAGAC 2 cut(s) 320, 348
Bpu10I CCTNAGC 2 cut(s) 639, 939
Bpu1102I GCTNAGC 1 cut(s) 1494
BpuEI CTTGAG 2 cut(s) 257, 290
BpuMI CCSGG 2 cut(s) 293, 294
BsaBI GATNNNNATC 1 cut(s) 789
BsaHI GRCGYC 2 cut(s) 417, 615
BsaI GGTCTC 1 cut(s) 842
BsaJI CCNNGG 5 cut(s) 292, 507, 723, 875, 1024
BsaWI WCCGGW 3 cut(s) 85, 233, 323
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 1315
Bse3DI GCAATG 3 cut(s) 633, 963, 1018
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 3 cut(s) 137, 876, 1199
BseDI CCNNGG 5 cut(s) 292, 507, 723, 875, 1024
BseGI GGATG 3 cut(s) 739, 1059, 1066
BseJI GATNNNNATC 1 cut(s) 789
BseMI GCAATG 3 cut(s) 633, 963, 1018
BseMII CTCAG 3 cut(s) 930, 1158, 1508
BseNI ACTGG 1 cut(s) 1315
BseSI GKGCMC 1 cut(s) 777
BseX3I CGGCCG 1 cut(s) 609
BseXI GCAGC 2 cut(s) 1138, 1201
BseYI CCCAGC 1 cut(s) 249
Bsh1236I CGCG 2 cut(s) 95, 828
Bsh1285I CGRYCG 2 cut(s) 213, 612
BshFI GGCC 5 cut(s) 191, 458, 611, 655, 814
BshTI ACCGGT 1 cut(s) 233
BsiEI CGRYCG 2 cut(s) 213, 612
BsiHKCI CYCGRG 2 cut(s) 292, 506
BsiSI CCGG 5 cut(s) 86, 234, 293, 324, 656
BslFI GGGAC 3 cut(s) 428, 1256, 1337
BsmAI GTCTC 1 cut(s) 842
BsmFI GGGAC 3 cut(s) 428, 1256, 1337
BsnI GGCC 5 cut(s) 191, 458, 611, 655, 814
Bso31I GGTCTC 1 cut(s) 842
BsoBI CYCGRG 2 cut(s) 292, 506
Bsp1286I GDGCHC 2 cut(s) 299, 777
Bsp143I GATC 3 cut(s) 376, 648, 760
Bsp1720I GCTNAGC 1 cut(s) 1494
Bsp19I CCATGG 1 cut(s) 1024
Bsp68I TCGCGA 1 cut(s) 828
BspACI CCGC 2 cut(s) 93, 777
BspANI GGCC 5 cut(s) 191, 458, 611, 655, 814
BspCNI CTCAG 3 cut(s) 931, 1159, 1507
BspFNI CGCG 2 cut(s) 95, 828
BspLI GGNNCC 5 cut(s) 90, 660, 762, 1244, 1245
BspMAI CTGCAG 1 cut(s) 1219
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 755, 768
BspTNI GGTCTC 1 cut(s) 842
BsrDI GCAATG 3 cut(s) 633, 963, 1018
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 1315
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 5 cut(s) 292, 507, 723, 875, 1024
BssMI GATC 3 cut(s) 376, 648, 760
BssNI GRCGYC 2 cut(s) 417, 615
BssT1I CCWWGG 2 cut(s) 723, 1024
Bst2UI CCWGG 3 cut(s) 137, 876, 1199
Bst4CI ACNGT 4 cut(s) 23, 177, 203, 1292
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 2 cut(s) 417, 615
BstAPI GCANNNNNTGC 1 cut(s) 393
BstC8I GCNNGC 2 cut(s) 777, 897
BstDEI CTNAG 6 cut(s) 639, 861, 939, 1167, 1388, 1494
BstDSI CCRYGG 1 cut(s) 1024
BstF5I GGATG 3 cut(s) 739, 1059, 1066
BstFNI CGCG 2 cut(s) 95, 828
BstH2I RGCGCY 1 cut(s) 836
BstHHI GCGC 2 cut(s) 835, 901
BstKTI GATC 3 cut(s) 379, 651, 763
BstMAI GTCTC 1 cut(s) 842
BstMBI GATC 3 cut(s) 376, 648, 760
BstMCI CGRYCG 2 cut(s) 213, 612
BstMWI GCNNNNNNNGC 5 cut(s) 188, 393, 464, 811, 935
BstNI CCWGG 3 cut(s) 137, 876, 1199
BstNSI RCATGY 2 cut(s) 1111, 1465
BstSCI CCNGG 5 cut(s) 135, 291, 292, 874, 1197
BstSFI CTRYAG 2 cut(s) 552, 1215
BstSLI GKGCMC 1 cut(s) 777
BstUI CGCG 2 cut(s) 95, 828
BstV1I GCAGC 2 cut(s) 1138, 1201
BstV2I GAAGAC 2 cut(s) 320, 348
BstX2I RGATCY 1 cut(s) 760
BstXI CCANNNNNNTGG 3 cut(s) 360, 682, 730
BstYI RGATCY 1 cut(s) 760
BstZI CGGCCG 1 cut(s) 609
BsuI GTATCC 1 cut(s) 1300
BsuRI GGCC 5 cut(s) 191, 458, 611, 655, 814
BtgI CCRYGG 1 cut(s) 1024
BtgZI GCGATG 2 cut(s) 482, 939
BtsCI GGATG 3 cut(s) 739, 1059, 1066
BtsIMutI CAGTG 1 cut(s) 199
BtuMI TCGCGA 1 cut(s) 828
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 777, 897
CfoI GCGC 2 cut(s) 835, 901
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 7 cut(s) 268, 321, 535, 658, 812, 1195, 1243
Cfr9I CCCGGG 1 cut(s) 292
CseI GACGC 2 cut(s) 425, 623
CspAI ACCGGT 1 cut(s) 233
CviAII CATG 4 cut(s) 409, 1025, 1108, 1462
DdeI CTNAG 6 cut(s) 639, 861, 939, 1167, 1388, 1494
DpnI GATC 3 cut(s) 378, 650, 762
DpnII GATC 3 cut(s) 376, 648, 760
DrdI GACNNNNNNGTC 1 cut(s) 1439
DseDI GACNNNNNNGTC 1 cut(s) 1439
EaeI YGGCCR 3 cut(s) 189, 456, 609
EagI CGGCCG 1 cut(s) 609
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
EclXI CGGCCG 1 cut(s) 609
Eco130I CCWWGG 2 cut(s) 723, 1024
Eco24I GRGCYC 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 842
Eco47I GGWCC 6 cut(s) 268, 321, 535, 658, 1195, 1243
Eco52I CGGCCG 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 314
Eco88I CYCGRG 2 cut(s) 292, 506
EcoO109I RGGNCCY 2 cut(s) 268, 1243
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 3 cut(s) 135, 874, 1197
EcoT14I CCWWGG 2 cut(s) 723, 1024
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 2 cut(s) 723, 1024
FaeI CATG 4 cut(s) 412, 1028, 1111, 1465
FalI AAGNNNNNCTT 4 cut(s) 380, 412, 1422, 1454
FaqI GGGAC 3 cut(s) 428, 1256, 1337
FatI CATG 4 cut(s) 408, 1024, 1107, 1461
FauI CCCGC 2 cut(s) 100, 784
FblI GTMKAC 1 cut(s) 1071
Fnu4HI GCNGC 3 cut(s) 1152, 1215, 1499
FokI GGATG 3 cut(s) 746, 1066, 1073
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 3 cut(s) 1152, 1215, 1499
FspBI CTAG 3 cut(s) 930, 1328, 1502
GlaI GCGC 2 cut(s) 834, 900
GluI GCNGC 3 cut(s) 1152, 1215, 1499
GsaI CCCAGC 1 cut(s) 253
HaeII RGCGCY 1 cut(s) 836
HaeIII GGCC 5 cut(s) 191, 458, 611, 655, 814
HapII CCGG 5 cut(s) 86, 234, 293, 324, 656
HgaI GACGC 2 cut(s) 425, 623
HhaI GCGC 2 cut(s) 835, 901
Hin1I GRCGYC 2 cut(s) 417, 615
Hin1II CATG 4 cut(s) 412, 1028, 1111, 1465
Hin6I GCGC 2 cut(s) 833, 899
HinP1I GCGC 2 cut(s) 833, 899
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 5 cut(s) 364, 745, 785, 823, 1350
HpaII CCGG 5 cut(s) 86, 234, 293, 324, 656
HphI GGTGA 1 cut(s) 754
Hpy166II GTNNAC 2 cut(s) 1072, 1164
Hpy188I TCNGA 4 cut(s) 115, 750, 795, 1344
Hpy188III TCNNGA 6 cut(s) 506, 827, 916, 1193, 1222, 1267
Hpy8I GTNNAC 2 cut(s) 1072, 1164
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 2 cut(s) 298, 695
HpyCH4III ACNGT 4 cut(s) 23, 177, 203, 1292
HpyCH4IV ACGT 2 cut(s) 221, 258
HpyCH4V TGCA 7 cut(s) 182, 587, 979, 1018, 1217, 1256, 1373
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 393, 464, 811, 935
HpyF3I CTNAG 6 cut(s) 639, 861, 939, 1167, 1388, 1494
HpySE526I ACGT 2 cut(s) 221, 258
Hsp92I GRCGYC 2 cut(s) 417, 615
Hsp92II CATG 4 cut(s) 412, 1028, 1111, 1465
HspAI GCGC 2 cut(s) 833, 899
KflI GGGWCCC 1 cut(s) 1243
Kzo9I GATC 3 cut(s) 376, 648, 760
LmnI GCTCC 1 cut(s) 935
Lsp1109I GCAGC 2 cut(s) 1138, 1201
LweI GCATC 6 cut(s) 394, 916, 1044, 1110, 1374, 1404
MaeI CTAG 3 cut(s) 930, 1328, 1502
MaeII ACGT 2 cut(s) 221, 258
MaeIII GTNAC 4 cut(s) 203, 244, 444, 1140
MalI GATC 3 cut(s) 378, 650, 762
MboI GATC 3 cut(s) 376, 648, 760
MboII GAAGA 7 cut(s) 109, 227, 275, 320, 353, 1401, 1404
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 1 cut(s) 760
MhlI GDGCHC 2 cut(s) 299, 777
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 8 cut(s) 183, 391, 571, 588, 1000, 1090, 1204, 1285
MluNI TGGCCA 1 cut(s) 458
MlyI GAGTC 2 cut(s) 754, 1359
MmeI TCCRAC 3 cut(s) 138, 663, 788
Mox20I TGGCCA 1 cut(s) 458
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 458
MseI TTAA 6 cut(s) 807, 1038, 1116, 1128, 1176, 1507
MslI CAYNNNNRTG 3 cut(s) 358, 992, 1023
Msp20I TGGCCA 1 cut(s) 458
MspI CCGG 5 cut(s) 86, 234, 293, 324, 656
MspR9I CCNGG 5 cut(s) 137, 293, 294, 876, 1199
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 3 cut(s) 137, 876, 1199
MvnI CGCG 2 cut(s) 95, 828
MwoI GCNNNNNNNGC 5 cut(s) 188, 393, 464, 811, 935
NciI CCSGG 2 cut(s) 293, 294
NcoI CCATGG 1 cut(s) 1024
NdeII GATC 3 cut(s) 376, 648, 760
NlaIII CATG 4 cut(s) 412, 1028, 1111, 1465
NlaIV GGNNCC 5 cut(s) 90, 660, 762, 1244, 1245
NmuCI GTSAC 2 cut(s) 203, 244
NruI TCGCGA 1 cut(s) 828
NspI RCATGY 2 cut(s) 1111, 1465
OliI CACNNNNGTG 1 cut(s) 992
PaqCI CACCTGC 1 cut(s) 43
PciI ACATGT 2 cut(s) 1107, 1461
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 3 cut(s) 364, 785, 823
PinAI ACCGGT 1 cut(s) 233
PkrI GCNGC 3 cut(s) 1153, 1216, 1500
PleI GAGTC 2 cut(s) 753, 1358
PpsI GAGTC 2 cut(s) 753, 1358
PpuMI RGGWCCY 2 cut(s) 268, 1243
PscI ACATGT 2 cut(s) 1107, 1461
PshBI ATTAAT 1 cut(s) 1038
Psp1406I AACGTT 1 cut(s) 221
Psp5II RGGWCCY 2 cut(s) 268, 1243
Psp6I CCWGG 3 cut(s) 135, 874, 1197
PspFI CCCAGC 1 cut(s) 249
PspGI CCWGG 3 cut(s) 135, 874, 1197
PspN4I GGNNCC 5 cut(s) 90, 660, 762, 1244, 1245
PspPI GGNCC 7 cut(s) 268, 321, 535, 658, 812, 1195, 1243
PspPPI RGGWCCY 2 cut(s) 268, 1243
PstI CTGCAG 1 cut(s) 1219
PsuI RGATCY 1 cut(s) 760
RruI TCGCGA 1 cut(s) 828
RseI CAYNNNNRTG 3 cut(s) 358, 992, 1023
SaqAI TTAA 6 cut(s) 807, 1038, 1116, 1128, 1176, 1507
SatI GCNGC 3 cut(s) 1152, 1215, 1499
Sau3AI GATC 3 cut(s) 376, 648, 760
Sau96I GGNCC 7 cut(s) 268, 321, 535, 658, 812, 1195, 1243
SchI GAGTC 2 cut(s) 754, 1359
ScrFI CCNGG 5 cut(s) 137, 293, 294, 876, 1199
SduI GDGCHC 2 cut(s) 299, 777
SfaNI GCATC 6 cut(s) 394, 916, 1044, 1110, 1374, 1404
SfcI CTRYAG 2 cut(s) 552, 1215
SinI GGWCC 6 cut(s) 268, 321, 535, 658, 1195, 1243
SmaI CCCGGG 1 cut(s) 294
SmiMI CAYNNNNRTG 3 cut(s) 358, 992, 1023
SmlI CTYRAG 2 cut(s) 272, 305
SmoI CTYRAG 2 cut(s) 272, 305
Sse9I AATT 8 cut(s) 183, 391, 571, 588, 1000, 1090, 1204, 1285
SsiI CCGC 2 cut(s) 93, 777
SspI AATATT 1 cut(s) 1036
SspMI CTAG 3 cut(s) 930, 1328, 1502
StyD4I CCNGG 5 cut(s) 135, 291, 292, 874, 1197
StyI CCWWGG 2 cut(s) 723, 1024
TaaI ACNGT 4 cut(s) 23, 177, 203, 1292
TaiI ACGT 2 cut(s) 224, 261
TaqI TCGA 4 cut(s) 52, 213, 241, 1487
TaqII GACCGA 1 cut(s) 199
TasI AATT 8 cut(s) 183, 391, 571, 588, 1000, 1090, 1204, 1285
TfiI GAWTC 3 cut(s) 364, 785, 823
Tru1I TTAA 6 cut(s) 807, 1038, 1116, 1128, 1176, 1507
Tru9I TTAA 6 cut(s) 807, 1038, 1116, 1128, 1176, 1507
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 2 cut(s) 203, 244
TseI GCWGC 3 cut(s) 1151, 1214, 1498
Tsp45I GTSAC 2 cut(s) 203, 244
TspDTI ATGAA 4 cut(s) 354, 446, 777, 1485
TspMI CCCGGG 1 cut(s) 292
TspRI CASTG 1 cut(s) 206
VpaK11BI GGWCC 6 cut(s) 268, 321, 535, 658, 1195, 1243
VspI ATTAAT 1 cut(s) 1038
XapI RAATTY 2 cut(s) 571, 1090
XceI RCATGY 2 cut(s) 1111, 1465
XmaI CCCGGG 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 1071
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 3 cut(s) 930, 1328, 1502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.