Rroxscaffold_6G00391590

Pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014786
Physical Location & Seq
Forward (+)
10159894 .. 10162502
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391590.1

Sequence Viewer

Length: 1257 bp
ATGAGCAGAACAAAGCGACACCGTGATTACCCACCTCCTTCCTCTCCTTGTCGAAACCCTAATCAACCCGAGCCCGAAGCCGCGAAGAAACCCCACCAATCCGACCCTACCTTTCCCTCATACCTGGACACTCCCAATCCCTTACCTCCCAAAATCAAACTGCTGTGTGCAATTGTGGCCGAAATCCACTGTCTCTCCGTCGAAGAAACGTTGAACGACACTGGTATTCGAGTGACCCAGCAAGACGTTGAAGAGGTCCTCAAGCTCTCCTACGCCTTCCCGGGCCCTGCCCTCAAGTTCTTTCGGTGGTCCGGTCGTCAGCTCAATGAAGACCACAGCCCTTATTCGTGGAATCTGGTTGTTGATCTCTTGGGCAAGAATTGCTTCTTTGATGCCATGTGGGACGCCATCAAGTCTATGAAGCAAGAAAGGTTACTCTCTTTGGCCACTTTTGCTTCTGTTTTTAGCAGTTATGTAGTTGCCCATCGCACTCCCGAGGCTCTTATGACATTTGAGGTTATGGACCAATATGGTGTTCCTACAGATATTGTAGCATTGAATTCTCTTTTGAGTGCAATTTGTAGAGATGGCAAGACGGCCGATGCCCTTGATTTTTACTACATTGCTAAGGACAAGATCAGGCCGGACCCCGATACTTACGCCATCTTGTTGGAGGGTTGGGAGAGTGAAGGCAATGTAGCCTCGGCTACCAAGGTTTTGGATGAGATGGTGAGTCAGATTGGTTGGGATCCAACCAATGTGCCCGCCTACGATTCATATCTGAACACTTTGCTTAACGGGCCTAATGGGATTCGCGAGGCACTGGACTTCTTTGAGACCTTGAAAGCTAAGAGCTGTTATCCAGGGGTCAAGTTTTTCAGGCTTGCGCTTGATGAGTGTGTCAAGAAAGGCGATGCTAGGGGAGCTGAGGCTCTTTGGGAGGCAATGGATAATTGTATTGCTGCAGTCAGGATATACTTGGATTTGGGGGACCCTTATTTTGCTATAAAAGTCTGGAAGTTTATGATAGAAAATTACCGTTCTGGCTTGGAGGATACTGGGAATTTGTTGGTTCTAGGACTTCGCAATCTGAACAGAGTCCCAGAAGCAGTCAAGTATGCAGAGGATATGATGCTAAGAGGAATCAAGTTGAGTTCTTCTTCAATGTCAAAACTCAAAGACAGCCTTGTCCAAGCAAAGAAGCAATACATGTATGATGAACTTTTGAGAAAGTCGAAAGCTCAGCAGCTAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

418

Amino Acids

47.11

Weight (kDa)

5.6

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014786)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g03480
malus_domestica MD09G1262300.v1.1
prunus_persica Prupe.3G160100_v2.0.a1
pyrus_communis pycom09g17670
rosa_chinensis RchiOBHm_Chr3g0493431
rosa_laevigata RLG00000022714
rosa_multiflora Rmu_co8321897.1_g000001 Rmu_sc0003935.1_g000001 Rmu_sc0019660.1_g000001
rosa_roxburghii Rroxscaffold_6G00391590
rosa_rugosa Rorug03G0261000
rosa_samantha Rh3AG310100 Rh3BG346200 Rh3CG343800 Rh3DG345200
rosa_wichuraiana Rw0G011150 Rw3G027240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1187
AccII CGCG 2 cut(s) 83, 816
AciI CCGC 2 cut(s) 81, 765
AclI AACGTT 1 cut(s) 209
AclWI GGATC 2 cut(s) 743, 756
AcoI YGGCCR 3 cut(s) 177, 444, 597
AcsI RAATTY 2 cut(s) 559, 1063
AcyI GRCGYC 1 cut(s) 405
AflIII ACRYGT 1 cut(s) 1209
AgsI TTSAA 5 cut(s) 214, 251, 559, 844, 1164
AjnI CCWGG 2 cut(s) 123, 862
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 7 cut(s) 265, 322, 848, 855, 926, 1241, 1249
AluI AGCT 7 cut(s) 265, 322, 848, 855, 926, 1241, 1249
Alw26I GTCTC 2 cut(s) 197, 830
AlwI GGATC 2 cut(s) 743, 756
Ama87I CYCGRG 3 cut(s) 68, 280, 494
AoxI GGCC 6 cut(s) 177, 283, 444, 597, 641, 800
ApaI GGGCCC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 962, 1246
ApoI RAATTY 2 cut(s) 559, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 983, 1015
Asp700I GAANNNNTTC 1 cut(s) 383
AspLEI GCGC 1 cut(s) 889
AspS9I GGNCC 8 cut(s) 256, 283, 284, 309, 523, 646, 800, 991
AsuC2I CCSGG 2 cut(s) 281, 282
AsuHPI GGTGA 1 cut(s) 742
AvaI CYCGRG 3 cut(s) 68, 280, 494
AvaII GGWCC 5 cut(s) 256, 309, 523, 646, 991
BaeGI GKGCMC 2 cut(s) 287, 765
BalI TGGCCA 1 cut(s) 446
BamHI GGATCC 1 cut(s) 748
BanII GRGCYC 2 cut(s) 75, 287
BbsI GAAGAC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 927
BbvI GCAGC 1 cut(s) 949
BccI CCATC 5 cut(s) 416, 492, 581, 671, 721
BceAI ACGGC 1 cut(s) 612
BciT130I CCWGG 2 cut(s) 125, 864
BciVI GTATCC 1 cut(s) 1048
BcnI CCSGG 2 cut(s) 281, 282
BcoDI GTCTC 2 cut(s) 197, 830
BfaI CTAG 3 cut(s) 918, 1076, 1250
BfmI CTRYAG 2 cut(s) 540, 963
BfuI GTATCC 1 cut(s) 1048
BisI GCNGC 3 cut(s) 81, 963, 1247
BlpI GCTNAGC 1 cut(s) 1242
BlsI GCNGC 3 cut(s) 82, 964, 1248
Bme1390I CCNGG 4 cut(s) 125, 281, 282, 864
Bme18I GGWCC 5 cut(s) 256, 309, 523, 646, 991
BmeT110I CYCGRG 3 cut(s) 68, 280, 494
BmgT120I GGNCC 8 cut(s) 256, 283, 284, 309, 523, 646, 800, 991
BmiI GGNNCC 5 cut(s) 285, 648, 750, 992, 993
BmrFI CCNGG 4 cut(s) 125, 281, 282, 864
BmrI ACTGGG 1 cut(s) 1068
BmsI GCATC 4 cut(s) 382, 592, 904, 1122
BmuI ACTGGG 1 cut(s) 1068
BpiI GAAGAC 1 cut(s) 336
Bpu10I CCTNAGC 2 cut(s) 627, 927
Bpu1102I GCTNAGC 1 cut(s) 1242
BpuEI CTTGAG 2 cut(s) 245, 278
BpuMI CCSGG 2 cut(s) 281, 282
BsaBI GATNNNNATC 1 cut(s) 777
BsaHI GRCGYC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 5 cut(s) 280, 495, 702, 711, 863
BsaWI WCCGGW 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bse1I ACTGG 3 cut(s) 226, 828, 1063
Bse3DI GCAATG 3 cut(s) 621, 700, 951
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 2 cut(s) 125, 864
BseDI CCNNGG 5 cut(s) 280, 495, 702, 711, 863
BseGI GGATG 1 cut(s) 727
BseJI GATNNNNATC 1 cut(s) 777
BseMI GCAATG 3 cut(s) 621, 700, 951
BseMII CTCAG 2 cut(s) 918, 1256
BseNI ACTGG 3 cut(s) 226, 828, 1063
BseSI GKGCMC 2 cut(s) 287, 765
BseX3I CGGCCG 1 cut(s) 597
BseXI GCAGC 1 cut(s) 949
BseYI CCCAGC 1 cut(s) 237
Bsh1236I CGCG 2 cut(s) 83, 816
Bsh1285I CGRYCG 2 cut(s) 316, 600
BshFI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
BsiEI CGRYCG 2 cut(s) 316, 600
BsiHKCI CYCGRG 3 cut(s) 68, 280, 494
BsiSI CCGG 3 cut(s) 281, 312, 644
BslFI GGGAC 3 cut(s) 416, 1004, 1085
BsmAI GTCTC 2 cut(s) 197, 830
BsmFI GGGAC 3 cut(s) 416, 1004, 1085
BsnI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
Bso31I GGTCTC 1 cut(s) 830
BsoBI CYCGRG 3 cut(s) 68, 280, 494
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 3 cut(s) 75, 287, 765
Bsp143I GATC 3 cut(s) 364, 636, 748
Bsp1720I GCTNAGC 1 cut(s) 1242
Bsp68I TCGCGA 1 cut(s) 816
BspACI CCGC 2 cut(s) 81, 765
BspANI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
BspCNI CTCAG 2 cut(s) 919, 1255
BspFNI CGCG 2 cut(s) 83, 816
BspLI GGNNCC 5 cut(s) 285, 648, 750, 992, 993
BspMAI CTGCAG 1 cut(s) 967
BspPI GGATC 2 cut(s) 743, 756
BspTNI GGTCTC 1 cut(s) 830
BsrDI GCAATG 3 cut(s) 621, 700, 951
BsrI ACTGG 3 cut(s) 226, 828, 1063
BssECI CCNNGG 5 cut(s) 280, 495, 702, 711, 863
BssMI GATC 3 cut(s) 364, 636, 748
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 711
Bst2UI CCWGG 2 cut(s) 125, 864
Bst4CI ACNGT 3 cut(s) 23, 191, 1040
Bst6I CTCTTC 1 cut(s) 246
BstACI GRCGYC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 381
BstC8I GCNNGC 2 cut(s) 765, 885
BstDEI CTNAG 5 cut(s) 627, 849, 927, 1136, 1242
BstF5I GGATG 1 cut(s) 727
BstFNI CGCG 2 cut(s) 83, 816
BstHHI GCGC 1 cut(s) 889
BstKTI GATC 3 cut(s) 367, 639, 751
BstMAI GTCTC 2 cut(s) 197, 830
BstMBI GATC 3 cut(s) 364, 636, 748
BstMCI CGRYCG 2 cut(s) 316, 600
BstMWI GCNNNNNNNGC 5 cut(s) 176, 381, 452, 799, 923
BstNI CCWGG 2 cut(s) 125, 864
BstNSI RCATGY 1 cut(s) 1213
BstSCI CCNGG 4 cut(s) 123, 279, 280, 862
BstSFI CTRYAG 2 cut(s) 540, 963
BstSLI GKGCMC 2 cut(s) 287, 765
BstUI CGCG 2 cut(s) 83, 816
BstV1I GCAGC 1 cut(s) 949
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 748
BstXI CCANNNNNNTGG 2 cut(s) 670, 718
BstYI RGATCY 1 cut(s) 748
BstZI CGGCCG 1 cut(s) 597
BsuI GTATCC 1 cut(s) 1048
BsuRI GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
BtgZI GCGATG 2 cut(s) 470, 927
BtsCI GGATG 1 cut(s) 727
BtsIMutI CAGTG 3 cut(s) 187, 219, 821
BtuMI TCGCGA 1 cut(s) 816
Cac8I GCNNGC 2 cut(s) 765, 885
CfoI GCGC 1 cut(s) 889
Cfr13I GGNCC 8 cut(s) 256, 283, 284, 309, 523, 646, 800, 991
Cfr9I CCCGGG 1 cut(s) 280
CseI GACGC 1 cut(s) 413
CviAII CATG 2 cut(s) 397, 1210
DdeI CTNAG 5 cut(s) 627, 849, 927, 1136, 1242
DpnI GATC 3 cut(s) 366, 638, 750
DpnII GATC 3 cut(s) 364, 636, 748
DrdI GACNNNNNNGTC 1 cut(s) 1187
DseDI GACNNNNNNGTC 1 cut(s) 1187
EaeI YGGCCR 3 cut(s) 177, 444, 597
EagI CGGCCG 1 cut(s) 597
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
EclXI CGGCCG 1 cut(s) 597
Eco130I CCWWGG 1 cut(s) 711
Eco24I GRGCYC 2 cut(s) 75, 287
Eco31I GGTCTC 1 cut(s) 830
Eco47I GGWCC 5 cut(s) 256, 309, 523, 646, 991
Eco52I CGGCCG 1 cut(s) 597
Eco88I CYCGRG 3 cut(s) 68, 280, 494
EcoO109I RGGNCCY 3 cut(s) 256, 284, 991
EcoRI GAATTC 1 cut(s) 559
EcoRII CCWGG 2 cut(s) 123, 862
EcoT14I CCWWGG 1 cut(s) 711
EcoT38I GRGCYC 2 cut(s) 75, 287
ErhI CCWWGG 1 cut(s) 711
FaeI CATG 2 cut(s) 400, 1213
FalI AAGNNNNNCTT 4 cut(s) 368, 400, 1170, 1202
FaqI GGGAC 3 cut(s) 416, 1004, 1085
FatI CATG 2 cut(s) 396, 1209
FauI CCCGC 1 cut(s) 772
Fnu4HI GCNGC 3 cut(s) 81, 963, 1247
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 2 cut(s) 75, 287
Fsp4HI GCNGC 3 cut(s) 81, 963, 1247
FspBI CTAG 3 cut(s) 918, 1076, 1250
GlaI GCGC 1 cut(s) 888
GluI GCNGC 3 cut(s) 81, 963, 1247
GsaI CCCAGC 1 cut(s) 241
HaeIII GGCC 6 cut(s) 179, 285, 446, 599, 643, 802
HapII CCGG 3 cut(s) 281, 312, 644
HgaI GACGC 1 cut(s) 413
HhaI GCGC 1 cut(s) 889
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 2 cut(s) 400, 1213
Hin6I GCGC 1 cut(s) 887
HinP1I GCGC 1 cut(s) 887
HinfI GANTC 6 cut(s) 352, 733, 773, 811, 1098, 1143
HpaII CCGG 3 cut(s) 281, 312, 644
HphI GGTGA 1 cut(s) 742
Hpy188I TCNGA 4 cut(s) 103, 738, 783, 1092
Hpy188III TCNNGA 5 cut(s) 494, 815, 904, 970, 1015
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 48, 286, 683
HpyCH4III ACNGT 3 cut(s) 23, 191, 1040
HpyCH4IV ACGT 2 cut(s) 209, 246
HpyCH4V TGCA 4 cut(s) 170, 575, 965, 1121
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 381, 452, 799, 923
HpyF3I CTNAG 5 cut(s) 627, 849, 927, 1136, 1242
HpySE526I ACGT 2 cut(s) 209, 246
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 2 cut(s) 400, 1213
HspAI GCGC 1 cut(s) 887
KflI GGGWCCC 1 cut(s) 991
Kzo9I GATC 3 cut(s) 364, 636, 748
LmnI GCTCC 1 cut(s) 923
Lsp1109I GCAGC 1 cut(s) 949
LweI GCATC 4 cut(s) 382, 592, 904, 1122
MaeI CTAG 3 cut(s) 918, 1076, 1250
MaeII ACGT 2 cut(s) 209, 246
MaeIII GTNAC 2 cut(s) 232, 432
MalI GATC 3 cut(s) 366, 638, 750
MboI GATC 3 cut(s) 364, 636, 748
MboII GAAGA 6 cut(s) 97, 215, 263, 341, 1149, 1152
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 3 cut(s) 75, 287, 765
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 7 cut(s) 171, 379, 559, 576, 952, 1033, 1063
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 2 cut(s) 742, 1107
MmeI TCCRAC 3 cut(s) 126, 651, 776
Mox20I TGGCCA 1 cut(s) 446
MroXI GAANNNNTTC 1 cut(s) 383
MscI TGGCCA 1 cut(s) 446
MseI TTAA 2 cut(s) 795, 1255
Msp20I TGGCCA 1 cut(s) 446
MspI CCGG 3 cut(s) 281, 312, 644
MspR9I CCNGG 4 cut(s) 125, 281, 282, 864
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 2 cut(s) 125, 864
MvnI CGCG 2 cut(s) 83, 816
MwoI GCNNNNNNNGC 5 cut(s) 176, 381, 452, 799, 923
NciI CCSGG 2 cut(s) 281, 282
NdeII GATC 3 cut(s) 364, 636, 748
NlaIII CATG 2 cut(s) 400, 1213
NlaIV GGNNCC 5 cut(s) 285, 648, 750, 992, 993
NmeAIII GCCGAG 1 cut(s) 683
NmuCI GTSAC 1 cut(s) 232
NruI TCGCGA 1 cut(s) 816
NspI RCATGY 1 cut(s) 1213
PciI ACATGT 1 cut(s) 1209
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 4 cut(s) 352, 773, 811, 1143
PkrI GCNGC 3 cut(s) 82, 964, 1248
PleI GAGTC 2 cut(s) 741, 1106
PpsI GAGTC 2 cut(s) 741, 1106
PpuMI RGGWCCY 2 cut(s) 256, 991
PscI ACATGT 1 cut(s) 1209
Psp1406I AACGTT 1 cut(s) 209
Psp5II RGGWCCY 2 cut(s) 256, 991
Psp6I CCWGG 2 cut(s) 123, 862
PspFI CCCAGC 1 cut(s) 237
PspGI CCWGG 2 cut(s) 123, 862
PspN4I GGNNCC 5 cut(s) 285, 648, 750, 992, 993
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 8 cut(s) 256, 283, 284, 309, 523, 646, 800, 991
PspPPI RGGWCCY 2 cut(s) 256, 991
PstI CTGCAG 1 cut(s) 967
PsuI RGATCY 1 cut(s) 748
RruI TCGCGA 1 cut(s) 816
SaqAI TTAA 2 cut(s) 795, 1255
SatI GCNGC 3 cut(s) 81, 963, 1247
Sau3AI GATC 3 cut(s) 364, 636, 748
Sau96I GGNCC 8 cut(s) 256, 283, 284, 309, 523, 646, 800, 991
SchI GAGTC 2 cut(s) 742, 1107
ScrFI CCNGG 4 cut(s) 125, 281, 282, 864
SduI GDGCHC 3 cut(s) 75, 287, 765
SfaNI GCATC 4 cut(s) 382, 592, 904, 1122
SfcI CTRYAG 2 cut(s) 540, 963
SinI GGWCC 5 cut(s) 256, 309, 523, 646, 991
SmaI CCCGGG 1 cut(s) 282
SmlI CTYRAG 2 cut(s) 260, 293
SmoI CTYRAG 2 cut(s) 260, 293
Sse9I AATT 7 cut(s) 171, 379, 559, 576, 952, 1033, 1063
SsiI CCGC 2 cut(s) 81, 765
SspMI CTAG 3 cut(s) 918, 1076, 1250
StyD4I CCNGG 4 cut(s) 123, 279, 280, 862
StyI CCWWGG 1 cut(s) 711
TaaI ACNGT 3 cut(s) 23, 191, 1040
TaiI ACGT 2 cut(s) 212, 249
TaqI TCGA 4 cut(s) 52, 201, 229, 1235
TasI AATT 7 cut(s) 171, 379, 559, 576, 952, 1033, 1063
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 4 cut(s) 352, 773, 811, 1143
Tru1I TTAA 2 cut(s) 795, 1255
Tru9I TTAA 2 cut(s) 795, 1255
TscAI CASTG 3 cut(s) 194, 226, 828
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 962, 1246
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 342, 434, 765, 1233
TspGWI ACGGA 1 cut(s) 187
TspMI CCCGGG 1 cut(s) 280
TspRI CASTG 3 cut(s) 194, 226, 828
VpaK11BI GGWCC 5 cut(s) 256, 309, 523, 646, 991
XapI RAATTY 2 cut(s) 559, 1063
XceI RCATGY 1 cut(s) 1213
XmaI CCCGGG 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 3 cut(s) 918, 1076, 1250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.