Rh3AG310100

Pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0014786
Physical Location & Seq
Reverse (-)
38944674 .. 38947291
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG310100.1

Sequence Viewer

Length: 1527 bp
ATGAGCAGAACAAAGCGACACCGTGATTACCCACCTGCTTCCTCTCCTTGTCGAAACCCTAATCAACCCGAACCCGAACCCGAACCCGCGAAGAAGCACCACCAATCCGACCCTACCTTTCCCTCATACCTGGACACTCCCAATCCCTTACCTCCCAAAATCAAACTGCTGTGTGCAATTGTGGCCGAAATCCACGGTCTCTCCGTCGAAGAAACTTTGAACGACACTGGTATTCGAGTGACCCAGCAAGACGTTGAAGAGGTCCTCAAGCTCTCCTACGCCTTCCCGGGCCCTGCCTTCAAGTTCTTTCAGTGGTCCGGTCGTCAGCTCAATGAAGGCCACAGCCCATATTCGTGGAATCTGGTTGTTGATCTCTTGGGCAAGAATTGCTTATTTGATCCCATGTGGGACGCCATCAAGTCAATGAAGCAAGAAAGGTTACTCTCTTTGGCCACTTTTGCTTCTGTGTTTAGTAGTTATGTAGTTGCCCATCGCACTCCCGAGGCTCTTATGACATTTGAGGTTATGGACCAATATGGTGTTCCTACAGATATTGTAGCATTGAATTCTCTTTTGAGTGCAATTTGTAGAGATGGCAAGACGACCGATGCCCTTGATTTTTACTACATTGCTAAGGACAAGATCAGGCCGGACCCCGATACTTACGCCATCTTGTTGGAGGGGTGGGAGAGTGAAGGGAATGTAGCCTCTGCTACCAAGGTTTTGGATGAGATGGTGAGTCACATTGGTTGGGATCCAACCAATGTGCCTGCCTACGATTCATATCTGAACACTTTGCTTAACGGGCCTAATGGGATTCGCGAGGCGCTGGACTTCTTTGAGACCTTGAAAGCTAAGAGGTGTTATCCAGGGGTCAAGTTTTTCAGGCTTGCGCTTGATGAGTGTGTCAAGAAAGGTGATCCTAGGGGGGCTGAGGCTCTTTGGGAGGCAATGGTAGGCAGACTTGGTTTGCAACCTGACACCAATATGTATAATTTGATGATTTCTTTGCATTGCCATGGAAACAATATTAATGTAGCAAAAAGGATGCTGGATGAGATGGTCTACAATGGGACATTTCCAAATTCGCAAACATATAACATGTTGTTTAAGATGCTCATTAAGAATAGGAAGTTACAGGAGGCTGCGGTTTTGTTTACTGAGATGATTAAAAATGAGTGTGTTCTGGACCAGGATAATTGTATTGCTGCAGTCAGGATATACTTGGATTTGGGGGACCCTTATTTTGCTATAAAAGTCTGGAAGTTTATGATAGAAAATTACCGTTCTGGCTTGGAGGATACTGGGAATTTGTTGGTTCTAGGACTTCGCAATCTGAACAGAGTCCCAGAAGCAGTCAAGTATGCAGAGGATATGATGCTAAGAGGAATCAAGTTGAGTTCTTCTTCAATGTCAAAACTCAAAGACAGCCTTGTCCAAGCAAAGAAGCAATACATGTATGATGAACTTTTGAGAAAGTCGAAAGCTCAGCAGCTAGTATCACTTCGAAAGGCAATACTAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

508

Amino Acids

57.6

Weight (kDa)

6.2

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 321 - 374 6.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 326 - 374 1.2e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014786)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g03480
malus_domestica MD09G1262300.v1.1
prunus_persica Prupe.3G160100_v2.0.a1
pyrus_communis pycom09g17670
rosa_chinensis RchiOBHm_Chr3g0493431
rosa_laevigata RLG00000022714
rosa_multiflora Rmu_co8321897.1_g000001 Rmu_sc0003935.1_g000001 Rmu_sc0019660.1_g000001
rosa_roxburghii Rroxscaffold_6G00391590
rosa_rugosa Rorug03G0261000
rosa_samantha Rh3AG310100 Rh3BG346200 Rh3CG343800 Rh3DG345200
rosa_wichuraiana Rw0G011150 Rw3G027240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
AasI GACNNNNNNGTC 1 cut(s) 1433
Acc36I ACCTGC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 1065
AccII CGCG 2 cut(s) 89, 822
AciI CCGC 2 cut(s) 87, 1148
AclWI GGATC 4 cut(s) 392, 749, 762, 914
AcoI YGGCCR 2 cut(s) 183, 450
AcsI RAATTY 3 cut(s) 565, 1084, 1309
AcyI GRCGYC 1 cut(s) 411
AflIII ACRYGT 2 cut(s) 1101, 1455
AgsI TTSAA 6 cut(s) 220, 257, 301, 565, 850, 1410
AjnI CCWGG 3 cut(s) 129, 868, 1191
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 5 cut(s) 271, 328, 854, 1487, 1495
AluI AGCT 5 cut(s) 271, 328, 854, 1487, 1495
Alw26I GTCTC 2 cut(s) 203, 836
AlwI GGATC 4 cut(s) 392, 749, 762, 914
Ama87I CYCGRG 2 cut(s) 286, 500
AoxI GGCC 6 cut(s) 183, 289, 337, 450, 647, 806
ApaI GGGCCC 1 cut(s) 293
ApeKI GCWGC 3 cut(s) 1145, 1208, 1492
ApoI RAATTY 3 cut(s) 565, 1084, 1309
ArsI GACNNNNNNTTYG 2 cut(s) 1229, 1261
AseI ATTAAT 1 cut(s) 1032
AspA2I CCTAGG 1 cut(s) 923
AspLEI GCGC 2 cut(s) 829, 895
AspS9I GGNCC 9 cut(s) 262, 289, 290, 315, 529, 652, 806, 1189, 1237
AsuC2I CCSGG 2 cut(s) 287, 288
AsuHPI GGTGA 2 cut(s) 748, 929
AsuII TTCGAA 1 cut(s) 1507
AvaI CYCGRG 2 cut(s) 286, 500
AvaII GGWCC 6 cut(s) 262, 315, 529, 652, 1189, 1237
AvrII CCTAGG 1 cut(s) 923
BaeGI GKGCMC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 452
BamHI GGATCC 1 cut(s) 754
BanII GRGCYC 1 cut(s) 293
BbvCI CCTCAGC 1 cut(s) 933
BbvI GCAGC 3 cut(s) 1132, 1195, 1504
BccI CCATC 6 cut(s) 422, 498, 587, 677, 727, 1054
BciT130I CCWGG 3 cut(s) 131, 870, 1193
BciVI GTATCC 1 cut(s) 1294
BcnI CCSGG 2 cut(s) 287, 288
BcoDI GTCTC 2 cut(s) 203, 836
BfaI CTAG 4 cut(s) 924, 1322, 1496, 1520
BfmI CTRYAG 2 cut(s) 546, 1209
BfoI RGCGCY 1 cut(s) 830
BfuAI ACCTGC 1 cut(s) 43
BfuI GTATCC 1 cut(s) 1294
BisI GCNGC 3 cut(s) 1146, 1209, 1493
BlnI CCTAGG 1 cut(s) 923
BlpI GCTNAGC 1 cut(s) 1488
BlsI GCNGC 3 cut(s) 1147, 1210, 1494
Bme1390I CCNGG 5 cut(s) 131, 287, 288, 870, 1193
Bme18I GGWCC 6 cut(s) 262, 315, 529, 652, 1189, 1237
BmeT110I CYCGRG 2 cut(s) 286, 500
BmgT120I GGNCC 9 cut(s) 262, 289, 290, 315, 529, 652, 806, 1189, 1237
BmiI GGNNCC 5 cut(s) 291, 654, 756, 1238, 1239
BmrFI CCNGG 5 cut(s) 131, 287, 288, 870, 1193
BmrI ACTGGG 1 cut(s) 1314
BmsI GCATC 4 cut(s) 598, 1038, 1104, 1368
BmuI ACTGGG 1 cut(s) 1314
Bpu10I CCTNAGC 2 cut(s) 633, 933
Bpu1102I GCTNAGC 1 cut(s) 1488
Bpu14I TTCGAA 1 cut(s) 1507
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 2 cut(s) 287, 288
BsaBI GATNNNNATC 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 411
BsaI GGTCTC 2 cut(s) 203, 836
BsaJI CCNNGG 7 cut(s) 193, 286, 501, 717, 869, 923, 1018
BsaWI WCCGGW 1 cut(s) 317
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bse1I ACTGG 2 cut(s) 232, 1309
Bse3DI GCAATG 3 cut(s) 627, 957, 1012
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 3 cut(s) 131, 870, 1193
BseDI CCNNGG 7 cut(s) 193, 286, 501, 717, 869, 923, 1018
BseGI GGATG 3 cut(s) 733, 1053, 1060
BseJI GATNNNNATC 1 cut(s) 783
BseMI GCAATG 3 cut(s) 627, 957, 1012
BseMII CTCAG 3 cut(s) 924, 1152, 1502
BseNI ACTGG 2 cut(s) 232, 1309
BseSI GKGCMC 1 cut(s) 293
BseXI GCAGC 3 cut(s) 1132, 1195, 1504
BseYI CCCAGC 1 cut(s) 243
Bsh1236I CGCG 2 cut(s) 89, 822
Bsh1285I CGRYCG 2 cut(s) 322, 606
BshFI GGCC 6 cut(s) 185, 291, 339, 452, 649, 808
BsiEI CGRYCG 2 cut(s) 322, 606
BsiHKCI CYCGRG 2 cut(s) 286, 500
BsiSI CCGG 3 cut(s) 287, 318, 650
BslFI GGGAC 4 cut(s) 422, 1087, 1250, 1331
BsmAI GTCTC 2 cut(s) 203, 836
BsmFI GGGAC 4 cut(s) 422, 1087, 1250, 1331
BsnI GGCC 6 cut(s) 185, 291, 339, 452, 649, 808
Bso31I GGTCTC 2 cut(s) 203, 836
BsoBI CYCGRG 2 cut(s) 286, 500
Bsp119I TTCGAA 1 cut(s) 1507
Bsp120I GGGCCC 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 5 cut(s) 370, 397, 642, 754, 919
Bsp1720I GCTNAGC 1 cut(s) 1488
Bsp19I CCATGG 1 cut(s) 1018
Bsp68I TCGCGA 1 cut(s) 822
BspACI CCGC 2 cut(s) 87, 1148
BspANI GGCC 6 cut(s) 185, 291, 339, 452, 649, 808
BspCNI CTCAG 3 cut(s) 925, 1153, 1501
BspFNI CGCG 2 cut(s) 89, 822
BspLI GGNNCC 5 cut(s) 291, 654, 756, 1238, 1239
BspMAI CTGCAG 1 cut(s) 1213
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 4 cut(s) 392, 749, 762, 914
BspT104I TTCGAA 1 cut(s) 1507
BspTNI GGTCTC 2 cut(s) 203, 836
BsrDI GCAATG 3 cut(s) 627, 957, 1012
BsrI ACTGG 2 cut(s) 232, 1309
BssECI CCNNGG 7 cut(s) 193, 286, 501, 717, 869, 923, 1018
BssMI GATC 5 cut(s) 370, 397, 642, 754, 919
BssNI GRCGYC 1 cut(s) 411
BssT1I CCWWGG 3 cut(s) 717, 923, 1018
Bst2UI CCWGG 3 cut(s) 131, 870, 1193
Bst4CI ACNGT 3 cut(s) 23, 197, 1286
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 411
BstAPI GCANNNNNTGC 1 cut(s) 387
BstBI TTCGAA 1 cut(s) 1507
BstC8I GCNNGC 2 cut(s) 771, 891
BstDEI CTNAG 6 cut(s) 633, 855, 933, 1161, 1382, 1488
BstDSI CCRYGG 2 cut(s) 193, 1018
BstF5I GGATG 3 cut(s) 733, 1053, 1060
BstFNI CGCG 2 cut(s) 89, 822
BstH2I RGCGCY 1 cut(s) 830
BstHHI GCGC 2 cut(s) 829, 895
BstKTI GATC 5 cut(s) 373, 400, 645, 757, 922
BstMAI GTCTC 2 cut(s) 203, 836
BstMBI GATC 5 cut(s) 370, 397, 642, 754, 919
BstMCI CGRYCG 2 cut(s) 322, 606
BstMWI GCNNNNNNNGC 4 cut(s) 182, 387, 458, 805
BstNI CCWGG 3 cut(s) 131, 870, 1193
BstNSI RCATGY 2 cut(s) 1105, 1459
BstSCI CCNGG 5 cut(s) 129, 285, 286, 868, 1191
BstSFI CTRYAG 2 cut(s) 546, 1209
BstSLI GKGCMC 1 cut(s) 293
BstUI CGCG 2 cut(s) 89, 822
BstV1I GCAGC 3 cut(s) 1132, 1195, 1504
BstX2I RGATCY 1 cut(s) 754
BstXI CCANNNNNNTGG 3 cut(s) 354, 676, 724
BstYI RGATCY 1 cut(s) 754
BsuI GTATCC 1 cut(s) 1294
BsuRI GGCC 6 cut(s) 185, 291, 339, 452, 649, 808
BtgI CCRYGG 2 cut(s) 193, 1018
BtgZI GCGATG 1 cut(s) 476
BtsCI GGATG 3 cut(s) 733, 1053, 1060
BtsIMutI CAGTG 2 cut(s) 225, 317
BtuMI TCGCGA 1 cut(s) 822
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 771, 891
CfoI GCGC 2 cut(s) 829, 895
Cfr13I GGNCC 9 cut(s) 262, 289, 290, 315, 529, 652, 806, 1189, 1237
Cfr9I CCCGGG 1 cut(s) 286
CseI GACGC 1 cut(s) 419
CviAII CATG 4 cut(s) 403, 1019, 1102, 1456
DdeI CTNAG 6 cut(s) 633, 855, 933, 1161, 1382, 1488
DpnI GATC 5 cut(s) 372, 399, 644, 756, 921
DpnII GATC 5 cut(s) 370, 397, 642, 754, 919
DrdI GACNNNNNNGTC 1 cut(s) 1433
DseDI GACNNNNNNGTC 1 cut(s) 1433
EaeI YGGCCR 2 cut(s) 183, 450
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 3 cut(s) 717, 923, 1018
Eco24I GRGCYC 1 cut(s) 293
Eco31I GGTCTC 2 cut(s) 203, 836
Eco47I GGWCC 6 cut(s) 262, 315, 529, 652, 1189, 1237
Eco88I CYCGRG 2 cut(s) 286, 500
EcoO109I RGGNCCY 3 cut(s) 262, 290, 1237
EcoRI GAATTC 1 cut(s) 565
EcoRII CCWGG 3 cut(s) 129, 868, 1191
EcoT14I CCWWGG 3 cut(s) 717, 923, 1018
EcoT38I GRGCYC 1 cut(s) 293
ErhI CCWWGG 3 cut(s) 717, 923, 1018
FaeI CATG 4 cut(s) 406, 1022, 1105, 1459
FalI AAGNNNNNCTT 4 cut(s) 374, 406, 1416, 1448
FaqI GGGAC 4 cut(s) 422, 1087, 1250, 1331
FatI CATG 4 cut(s) 402, 1018, 1101, 1455
FauI CCCGC 1 cut(s) 94
FblI GTMKAC 1 cut(s) 1065
Fnu4HI GCNGC 3 cut(s) 1146, 1209, 1493
FokI GGATG 3 cut(s) 740, 1060, 1067
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 3 cut(s) 1146, 1209, 1493
FspBI CTAG 4 cut(s) 924, 1322, 1496, 1520
GlaI GCGC 2 cut(s) 828, 894
GluI GCNGC 3 cut(s) 1146, 1209, 1493
GsaI CCCAGC 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 830
HaeIII GGCC 6 cut(s) 185, 291, 339, 452, 649, 808
HapII CCGG 3 cut(s) 287, 318, 650
HgaI GACGC 1 cut(s) 419
HhaI GCGC 2 cut(s) 829, 895
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 4 cut(s) 406, 1022, 1105, 1459
Hin6I GCGC 2 cut(s) 827, 893
HinP1I GCGC 2 cut(s) 827, 893
HinfI GANTC 6 cut(s) 358, 739, 779, 817, 1344, 1389
HpaII CCGG 3 cut(s) 287, 318, 650
HphI GGTGA 2 cut(s) 748, 929
Hpy166II GTNNAC 2 cut(s) 1066, 1158
Hpy188I TCNGA 3 cut(s) 109, 789, 1338
Hpy188III TCNNGA 6 cut(s) 500, 821, 910, 1187, 1216, 1261
Hpy8I GTNNAC 2 cut(s) 1066, 1158
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 4 cut(s) 292, 307, 329, 689
HpyCH4III ACNGT 3 cut(s) 23, 197, 1286
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 6 cut(s) 176, 581, 973, 1012, 1211, 1367
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 387, 458, 805
HpyF3I CTNAG 6 cut(s) 633, 855, 933, 1161, 1382, 1488
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 4 cut(s) 406, 1022, 1105, 1459
HspAI GCGC 2 cut(s) 827, 893
KflI GGGWCCC 1 cut(s) 1237
Kzo9I GATC 5 cut(s) 370, 397, 642, 754, 919
Lsp1109I GCAGC 3 cut(s) 1132, 1195, 1504
LweI GCATC 4 cut(s) 598, 1038, 1104, 1368
MaeI CTAG 4 cut(s) 924, 1322, 1496, 1520
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 4 cut(s) 238, 438, 740, 1134
MalI GATC 5 cut(s) 372, 399, 644, 756, 921
MboI GATC 5 cut(s) 370, 397, 642, 754, 919
MboII GAAGA 5 cut(s) 103, 221, 269, 1395, 1398
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 1 cut(s) 293
MlsI TGGCCA 1 cut(s) 452
MluCI AATT 9 cut(s) 177, 385, 565, 582, 994, 1084, 1198, 1279, 1309
MluNI TGGCCA 1 cut(s) 452
MlyI GAGTC 2 cut(s) 748, 1353
MmeI TCCRAC 3 cut(s) 132, 657, 782
Mox20I TGGCCA 1 cut(s) 452
MscI TGGCCA 1 cut(s) 452
MseI TTAA 5 cut(s) 801, 1032, 1110, 1122, 1170
MslI CAYNNNNRTG 3 cut(s) 352, 986, 1017
Msp20I TGGCCA 1 cut(s) 452
MspI CCGG 3 cut(s) 287, 318, 650
MspR9I CCNGG 5 cut(s) 131, 287, 288, 870, 1193
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 3 cut(s) 131, 870, 1193
MvnI CGCG 2 cut(s) 89, 822
MwoI GCNNNNNNNGC 4 cut(s) 182, 387, 458, 805
NciI CCSGG 2 cut(s) 287, 288
NcoI CCATGG 1 cut(s) 1018
NdeII GATC 5 cut(s) 370, 397, 642, 754, 919
NlaIII CATG 4 cut(s) 406, 1022, 1105, 1459
NlaIV GGNNCC 5 cut(s) 291, 654, 756, 1238, 1239
NmuCI GTSAC 2 cut(s) 238, 740
NruI TCGCGA 1 cut(s) 822
NspI RCATGY 2 cut(s) 1105, 1459
NspV TTCGAA 1 cut(s) 1507
PaqCI CACCTGC 1 cut(s) 43
PciI ACATGT 2 cut(s) 1101, 1455
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 4 cut(s) 358, 779, 817, 1389
PkrI GCNGC 3 cut(s) 1147, 1210, 1494
PleI GAGTC 2 cut(s) 747, 1352
PpsI GAGTC 2 cut(s) 747, 1352
PpuMI RGGWCCY 2 cut(s) 262, 1237
PscI ACATGT 2 cut(s) 1101, 1455
PshBI ATTAAT 1 cut(s) 1032
Psp5II RGGWCCY 2 cut(s) 262, 1237
Psp6I CCWGG 3 cut(s) 129, 868, 1191
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 3 cut(s) 129, 868, 1191
PspN4I GGNNCC 5 cut(s) 291, 654, 756, 1238, 1239
PspOMI GGGCCC 1 cut(s) 289
PspPI GGNCC 9 cut(s) 262, 289, 290, 315, 529, 652, 806, 1189, 1237
PspPPI RGGWCCY 2 cut(s) 262, 1237
PstI CTGCAG 1 cut(s) 1213
PsuI RGATCY 1 cut(s) 754
RruI TCGCGA 1 cut(s) 822
RseI CAYNNNNRTG 3 cut(s) 352, 986, 1017
SaqAI TTAA 5 cut(s) 801, 1032, 1110, 1122, 1170
SatI GCNGC 3 cut(s) 1146, 1209, 1493
Sau3AI GATC 5 cut(s) 370, 397, 642, 754, 919
Sau96I GGNCC 9 cut(s) 262, 289, 290, 315, 529, 652, 806, 1189, 1237
SchI GAGTC 2 cut(s) 748, 1353
ScrFI CCNGG 5 cut(s) 131, 287, 288, 870, 1193
SduI GDGCHC 1 cut(s) 293
SfaNI GCATC 4 cut(s) 598, 1038, 1104, 1368
SfcI CTRYAG 2 cut(s) 546, 1209
SfuI TTCGAA 1 cut(s) 1507
SinI GGWCC 6 cut(s) 262, 315, 529, 652, 1189, 1237
SmaI CCCGGG 1 cut(s) 288
SmiMI CAYNNNNRTG 3 cut(s) 352, 986, 1017
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 9 cut(s) 177, 385, 565, 582, 994, 1084, 1198, 1279, 1309
SsiI CCGC 2 cut(s) 87, 1148
SspI AATATT 1 cut(s) 1030
SspMI CTAG 4 cut(s) 924, 1322, 1496, 1520
StyD4I CCNGG 5 cut(s) 129, 285, 286, 868, 1191
StyI CCWWGG 3 cut(s) 717, 923, 1018
TaaI ACNGT 3 cut(s) 23, 197, 1286
TaiI ACGT 1 cut(s) 255
TaqI TCGA 5 cut(s) 52, 207, 235, 1481, 1507
TaqII GACCGA 1 cut(s) 620
TasI AATT 9 cut(s) 177, 385, 565, 582, 994, 1084, 1198, 1279, 1309
TfiI GAWTC 4 cut(s) 358, 779, 817, 1389
Tru1I TTAA 5 cut(s) 801, 1032, 1110, 1122, 1170
Tru9I TTAA 5 cut(s) 801, 1032, 1110, 1122, 1170
TscAI CASTG 2 cut(s) 232, 317
TseFI GTSAC 2 cut(s) 238, 740
TseI GCWGC 3 cut(s) 1145, 1208, 1492
Tsp45I GTSAC 2 cut(s) 238, 740
TspDTI ATGAA 4 cut(s) 348, 440, 771, 1479
TspGWI ACGGA 1 cut(s) 193
TspMI CCCGGG 1 cut(s) 286
TspRI CASTG 2 cut(s) 232, 317
VpaK11BI GGWCC 6 cut(s) 262, 315, 529, 652, 1189, 1237
VspI ATTAAT 1 cut(s) 1032
XapI RAATTY 3 cut(s) 565, 1084, 1309
XceI RCATGY 2 cut(s) 1105, 1459
XmaI CCCGGG 1 cut(s) 286
XmaJI CCTAGG 1 cut(s) 923
XmiI GTMKAC 1 cut(s) 1065
XspI CTAG 4 cut(s) 924, 1322, 1496, 1520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.