Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010271

Physical Location & Seq

Genomic Coordinates Reverse (-)

17922917 .. 17932622

Gene Structure 9706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G160500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTCTTCATTCAACTGCTTTCTGCTTTACTGGCGTGGTTTCTTTGCCTCGCAATTCGGTGTGTTTTAGTCAGAGGACAGTCAGAGCCTCGGCATTTTCTTGTCCACCTCTCAGTTCTATTTCCAGATCGAATGTCCAAGGAAAAGCATTTGCAGGAGATGCACTACTAGACACAAAGGAATCCTCCCTTGTGGTTTGTTTTGGGGAAATGCTTATTGATTTTGTCCCAACCACTAGTGGACTTTCACTGGCTGAAGCACCTGCATTTAAAAAAGCTGCTGGAGGAGCCCCTGCTAATGTTGCAGTTGGCATAGCTCGTCTTGGTGGCTCATCAGCTTTTATAGGGAAGGTTGGGGAAGATGAATTTGGGTACATGCTTGCTGATATACTAAAGGAAAATAATGTGAACAGTGAAGGGATGCGTTTTGATCCTGGTGCACGAACTGCTTTAGCATTTGTTACATTGAGGGGTGATGGGGAACGTGAGTTCATGTTTTATCGTAATCCTAGTGCTGATATGTTGCTTCAAGAAGCTGAACTTGATTTTGATTTAATTAGGAAGGCAAAAATTTTACATTATGGTTCTATAAGTCTTATCACGGAACCATGCAAGTCTGCTCATATTGCAGCAGCTAAAGCTGCAAAGGACGCTGGTGTAGTTTTGTCCTATGATCCTAACCTCAGGCTTCCATTGTGGCCTTCTGCAAAGAGTGCCAGAGAAGGAATTTTGAGTATATGGGAGACTGCTGATGTTATCAAGATAAGTGAAGAGGAGATTTCTTTTCTAACGGAAGGAGAAGATCCTTATGACGAAAATGTTGTTCGCAAATTGTACCATCCAAATCTTAAATTACTGCTGGTCACTGAGGGCCCTGATGGCTGCAGGTATTACACCAAGGAGTTCAGTGGAAGAGTCAAGGGTATGAAGGTAGATGCAGTGGACACCACTGGTGCTGGGGATGCATTTGTAGCAGGAATACTATCACAACTAGCTGTTGATCTCTCTTTGCTTCAGGAAGAGGGTAAACTGAGAGATGCTCTTCTGTTTGCTAATGCTTGTGGTGCATTGACTGTGACGGAGAGAGGTGCTATTCCGGCTTTGCCGACTAGAGAAGCTGTGCTGAATGTCATGCTCAAATCTGTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0030054 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046835 GO:0055044 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

384

Amino Acids

40.97

Weight (kDa)

5.27

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66430
fragaria_vesca	FvH4_1g28890 FvH4_1g28890 FvH4_1g28890 FvH4_1g28890
malus_domestica	MD09G1262800.v1.1 MD17G1257700.v1.1
prunus_persica	Prupe.3G160500_v2.0.a1 Prupe.3G160500_v2.0.a1
pyrus_communis	pycom09g17710 pycom17g25980
rosa_chinensis	RchiOBHm_Chr3g0493391
rosa_laevigata	RLG00000022716
rosa_multiflora	Rmu_sc0000828.1_g000020 Rmu_sc0010338.1_g000012
rosa_roxburghii	Rroxscaffold_6G00391620
rosa_rugosa	Rorug03G0260700
rosa_samantha	Rh3AG309800 Rh3CG343400 Rh3DG345000
rosa_wichuraiana	Rw3G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	271
Acc36I	ACCTGC	2 cut(s)	271, 876
AclWI	GGATC	3 cut(s)	425, 668, 797
AcsI	RAATTY	3 cut(s)	365, 570, 726
AcuI	CTGAAG	2 cut(s)	276, 998
AfaI	GTAC	2 cut(s)	374, 836
AgsI	TTSAA	2 cut(s)	15, 530
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	2 cut(s)	351, 383
AloI	GAACNNNNNNTCC	2 cut(s)	473, 505
AluBI	AGCT	8 cut(s)	278, 317, 338, 536, 635, 641, 995, 1118
AluI	AGCT	8 cut(s)	278, 317, 338, 536, 635, 641, 995, 1118
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	1 cut(s)	737
Alw44I	GTGCAC	1 cut(s)	438
AlwI	GGATC	3 cut(s)	425, 668, 797
AoxI	GGCC	2 cut(s)	698, 871
ApaI	GGGCCC	1 cut(s)	875
ApaLI	GTGCAC	1 cut(s)	438
ApeKI	GCWGC	5 cut(s)	278, 629, 632, 641, 882
ApoI	RAATTY	3 cut(s)	365, 570, 726
AspS9I	GGNCC	2 cut(s)	871, 872
AsuHPI	GGTGA	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	683
BaeGI	GKGCMC	2 cut(s)	442, 875
BanII	GRGCYC	2 cut(s)	292, 875
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	5 cut(s)	265, 628, 641, 644, 869
BccI	CCATC	3 cut(s)	470, 846, 872
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	737
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	5 cut(s)	170, 237, 510, 992, 1110
BfmI	CTRYAG	2 cut(s)	883, 1143
BfuAI	ACCTGC	2 cut(s)	271, 876
BglI	GCCNNNNNGGC	1 cut(s)	879
BisI	GCNGC	5 cut(s)	279, 630, 633, 642, 883
BlsI	GCNGC	5 cut(s)	280, 631, 634, 643, 884
Bme1390I	CCNGG	1 cut(s)	435
BmgT120I	GGNCC	2 cut(s)	871, 872
BmiI	GGNNCC	3 cut(s)	289, 606, 873
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	5 cut(s)	151, 411, 925, 952, 1027
BplI	GAGNNNNNCTC	2 cut(s)	1024, 1056
BpmI	CTGGAG	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	90, 139, 897
Bse1I	ACTGG	3 cut(s)	37, 255, 955
Bse21I	CCTNAGG	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	90, 139, 897
BseGI	GGATG	3 cut(s)	426, 838, 967
BseMII	CTCAG	4 cut(s)	127, 697, 858, 1022
BseNI	ACTGG	3 cut(s)	37, 255, 955
BseRI	GAGGAG	2 cut(s)	300, 788
BseSI	GKGCMC	2 cut(s)	442, 875
BseXI	GCAGC	5 cut(s)	265, 628, 641, 644, 869
BseYI	CCCAGC	1 cut(s)	956
BshFI	GGCC	2 cut(s)	700, 873
BsiHKAI	GWGCWC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	1097
BslFI	GGGAC	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	737
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	700, 873
Bsp120I	GGGCCC	1 cut(s)	871
Bsp1286I	GDGCHC	3 cut(s)	292, 442, 875
Bsp143I	GATC	5 cut(s)	128, 430, 673, 802, 1000
BspANI	GGCC	2 cut(s)	700, 873
BspCNI	CTCAG	4 cut(s)	126, 696, 859, 1023
BspLI	GGNNCC	3 cut(s)	289, 606, 873
BspMAI	CTGCAG	1 cut(s)	887
BspMI	ACCTGC	2 cut(s)	271, 876
BspPI	GGATC	3 cut(s)	425, 668, 797
BspQI	GCTCTTC	2 cut(s)	12, 1047
BsrI	ACTGG	3 cut(s)	37, 255, 955
BssECI	CCNNGG	3 cut(s)	90, 139, 897
BssMI	GATC	5 cut(s)	128, 430, 673, 802, 1000
BssT1I	CCWWGG	2 cut(s)	139, 897
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	82, 413, 1075
Bst6I	CTCTTC	5 cut(s)	12, 765, 907, 1014, 1047
BstAPI	GCANNNNNTGC	3 cut(s)	161, 446, 713
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	4 cut(s)	113, 683, 867, 1031
BstF5I	GGATG	3 cut(s)	426, 838, 967
BstKTI	GATC	5 cut(s)	131, 433, 676, 805, 1003
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	5 cut(s)	128, 430, 673, 802, 1000
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	2 cut(s)	883, 1143
BstSLI	GKGCMC	2 cut(s)	442, 875
BstV1I	GCAGC	5 cut(s)	265, 628, 641, 644, 869
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
Bsu36I	CCTNAGG	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	700, 873
BtsCI	GGATG	3 cut(s)	426, 838, 967
BtsI	GCAGTG	1 cut(s)	945
BtsIMutI	CAGTG	6 cut(s)	248, 418, 864, 913, 945, 948
BveI	ACCTGC	2 cut(s)	271, 876
Cac8I	GCNNGC	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	871, 872
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	2 cut(s)	373, 835
CviAII	CATG	4 cut(s)	376, 493, 609, 1132
CviQI	GTAC	2 cut(s)	373, 835
DdeI	CTNAG	4 cut(s)	113, 683, 867, 1031
DpnI	GATC	5 cut(s)	130, 432, 675, 804, 1002
DpnII	GATC	5 cut(s)	128, 430, 673, 802, 1000
DraI	TTTAAA	1 cut(s)	271
Eam1104I	CTCTTC	5 cut(s)	12, 765, 907, 1014, 1047
EarI	CTCTTC	5 cut(s)	12, 765, 907, 1014, 1047
Eco130I	CCWWGG	2 cut(s)	139, 897
Eco24I	GRGCYC	2 cut(s)	292, 875
Eco57I	CTGAAG	2 cut(s)	276, 998
Eco81I	CCTNAGG	1 cut(s)	683
EcoO109I	RGGNCCY	2 cut(s)	871, 872
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	139, 897
EcoT22I	ATGCAT	1 cut(s)	967
EcoT38I	GRGCYC	2 cut(s)	292, 875
ErhI	CCWWGG	2 cut(s)	139, 897
FaeI	CATG	4 cut(s)	379, 496, 612, 1135
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	4 cut(s)	375, 492, 608, 1131
Fnu4HI	GCNGC	5 cut(s)	279, 630, 633, 642, 883
FokI	GGATG	3 cut(s)	433, 825, 974
FriOI	GRGCYC	2 cut(s)	292, 875
Fsp4HI	GCNGC	5 cut(s)	279, 630, 633, 642, 883
FspBI	CTAG	5 cut(s)	170, 237, 510, 992, 1110
GluI	GCNGC	5 cut(s)	279, 630, 633, 642, 883
GsaI	CCCAGC	1 cut(s)	960
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	700, 873
HapII	CCGG	1 cut(s)	1097
HgaI	GACGC	1 cut(s)	659
Hin1II	CATG	4 cut(s)	379, 496, 612, 1135
HinfI	GANTC	2 cut(s)	182, 915
HpaII	CCGG	1 cut(s)	1097
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	6 cut(s)	107, 242, 409, 440, 943, 1028
Hpy188I	TCNGA	2 cut(s)	75, 86
Hpy188III	TCNNGA	4 cut(s)	126, 530, 760, 1016
Hpy8I	GTNNAC	6 cut(s)	107, 242, 409, 440, 943, 1028
HpyAV	CCTTC	7 cut(s)	343, 410, 556, 711, 716, 788, 922
HpyCH4III	ACNGT	3 cut(s)	82, 413, 1075
HpyCH4IV	ACGT	1 cut(s)	484
HpyF3I	CTNAG	4 cut(s)	113, 683, 867, 1031
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	4 cut(s)	379, 496, 612, 1135
Kzo9I	GATC	5 cut(s)	128, 430, 673, 802, 1000
LguI	GCTCTTC	2 cut(s)	12, 1047
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	5 cut(s)	265, 628, 641, 644, 869
LweI	GCATC	5 cut(s)	151, 411, 925, 952, 1027
MaeI	CTAG	5 cut(s)	170, 237, 510, 992, 1110
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	3 cut(s)	460, 862, 1075
MalI	GATC	5 cut(s)	130, 432, 675, 804, 1002
MboI	GATC	5 cut(s)	128, 430, 673, 802, 1000
MboII	GAAGA	6 cut(s)	371, 782, 812, 924, 1031, 1034
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	3 cut(s)	292, 442, 875
MluCI	AATT	7 cut(s)	55, 365, 555, 570, 726, 830, 851
MlyI	GAGTC	1 cut(s)	924
Mph1103I	ATGCAT	1 cut(s)	967
MseI	TTAA	3 cut(s)	270, 554, 849
MspI	CCGG	1 cut(s)	1097
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
NdeII	GATC	5 cut(s)	128, 430, 673, 802, 1000
NlaIII	CATG	4 cut(s)	379, 496, 612, 1135
NlaIV	GGNNCC	3 cut(s)	289, 606, 873
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	862, 1075
NsiI	ATGCAT	1 cut(s)	967
NspI	RCATGY	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	271
PciSI	GCTCTTC	2 cut(s)	12, 1047
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	5 cut(s)	280, 631, 634, 643, 884
PleI	GAGTC	1 cut(s)	923
PpsI	GAGTC	1 cut(s)	923
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	956
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	289, 606, 873
PspOMI	GGGCCC	1 cut(s)	871
PspPI	GGNCC	2 cut(s)	871, 872
PstI	CTGCAG	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	802
RsaI	GTAC	2 cut(s)	374, 836
RsaNI	GTAC	2 cut(s)	373, 835
SapI	GCTCTTC	2 cut(s)	12, 1047
SaqAI	TTAA	3 cut(s)	270, 554, 849
SatI	GCNGC	5 cut(s)	279, 630, 633, 642, 883
Sau3AI	GATC	5 cut(s)	128, 430, 673, 802, 1000
Sau96I	GGNCC	2 cut(s)	871, 872
SchI	GAGTC	1 cut(s)	924
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	3 cut(s)	292, 442, 875
SfaNI	GCATC	5 cut(s)	151, 411, 925, 952, 1027
SfcI	CTRYAG	2 cut(s)	883, 1143
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	7 cut(s)	55, 365, 555, 570, 726, 830, 851
SspMI	CTAG	5 cut(s)	170, 237, 510, 992, 1110
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	2 cut(s)	139, 897
TaaI	ACNGT	3 cut(s)	82, 413, 1075
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	1 cut(s)	131
TasI	AATT	7 cut(s)	55, 365, 555, 570, 726, 830, 851
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	3 cut(s)	270, 554, 849
Tru9I	TTAA	3 cut(s)	270, 554, 849
TscAI	CASTG	6 cut(s)	255, 418, 871, 913, 945, 955
TseFI	GTSAC	2 cut(s)	862, 1075
TseI	GCWGC	5 cut(s)	278, 629, 632, 641, 882
Tsp45I	GTSAC	2 cut(s)	862, 1075
TspDTI	ATGAA	3 cut(s)	378, 481, 941
TspGWI	ACGGA	3 cut(s)	617, 806, 1094
TspRI	CASTG	6 cut(s)	255, 418, 871, 913, 945, 955
VneI	GTGCAC	1 cut(s)	438
XapI	RAATTY	3 cut(s)	365, 570, 726
XceI	RCATGY	1 cut(s)	379
XspI	CTAG	5 cut(s)	170, 237, 510, 992, 1110
Zsp2I	ATGCAT	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.