Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010271

Physical Location & Seq

Genomic Coordinates Reverse (-)

24294047 .. 24299145

Gene Structure 5099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g25980.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTCTTCATTCTACTGCTTTCTGCTTTGGCGGGGTGGTTTCTTTGCCTCGCAATTCGGTTTCTTTTAGTCAACGGACAGTCAGAGCCTCTGCATTTGCTTCCCCACCACCTCTCAGTTCTTCCTCCATTGCCAGATTGAATGTCCAAGGAAAAGCATTTGCAGGAGATGTGCTACTGGACACAAAAGAATCCTCCCTTGTGGTTTGTTTCGGGGAAATGCTGATTGATTTTGTCCCAACTACTAGTGGACTTTCATTGGCTGAGGCACCTGCATTTAAAAAAGCTGCTGGAGGAGCCCCTGCTAATGTTGCAGTTGGCATAGCTCGTCTTGGTGGCTCATCAGCTTTTATTGGAAAGGTCGGGGAAGATGAATTTGGATACATGCTTGCTGATATACTAAAGGAGAATAATGTGAACAATGAGGGAATGCGTTTTGATCGATCTGGTGCACGAACTGCTTTAGCTTTTGTTACATTGAGGAGTGATGGGGAACGTGAGTTCATGTTTTATCGTAACCCTAGTGCTGATATGTTGCTTCAAGAAGCTGAACTTGATTTTGATTTAATTAGGAAGGCAAAAATATTACATTATGGTTCTATAAGTCTTATCACGGAACCATGCAAGTCAGCTCATATTGCAGCAACAAAAGCTGCAAAGGACGCTGGTATAGTTCTGTCCTATGATCCCAACCTCAGACTTCCACTGTGGCCTTCCGCAAAGAGTGCTAGAGAAGGAATTTTGAGTATATGGGACACTGCTGATGTTATCAAGATAAGTGAAGAAGAGATTTCTTTTCTAACGGAAGGAGAAGATCCATATGATGAAAATGTTGTTCGCAAATTGTACCATCCAAATCTTAAATTACTTCTGGTCACTGAGGGCCCTGATGGTTGCAGGTACTACACCAAGGAATTCAGTGGAAGAGTCAAGGGTATGAAGGTAGATGCAGTGGACACCACTGGTGCTGGGGACGCATTTGTGGCTGGAATATTATCACAACTAGCTGTTGATCTTTCTTTGCTTCAGGACGAGGACAAACTGAGAGATGCGCTCGTGTTTGCTAACGCTTGCGGCGCATTGACTGTGACGGGGAGAGGTGCTATTCCGGCTTTGCCAACTCGAGAATCGGTGTTGAATGCCCTTCTCAAGTCTGTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0030054 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046835 GO:0055044 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

388

Amino Acids

41.35

Weight (kDa)

5.34

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66430
fragaria_vesca	FvH4_1g28890 FvH4_1g28890 FvH4_1g28890 FvH4_1g28890
malus_domestica	MD09G1262800.v1.1 MD17G1257700.v1.1
prunus_persica	Prupe.3G160500_v2.0.a1 Prupe.3G160500_v2.0.a1
pyrus_communis	pycom09g17710 pycom17g25980
rosa_chinensis	RchiOBHm_Chr3g0493391
rosa_laevigata	RLG00000022716
rosa_multiflora	Rmu_sc0000828.1_g000020 Rmu_sc0010338.1_g000012
rosa_roxburghii	Rroxscaffold_6G00391620
rosa_rugosa	Rorug03G0260700
rosa_samantha	Rh3AG309800 Rh3CG343400 Rh3DG345000
rosa_wichuraiana	Rw3G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	280
Acc36I	ACCTGC	2 cut(s)	280, 888
AccB1I	GGYRCC	1 cut(s)	268
AciI	CCGC	3 cut(s)	33, 717, 1074
AclWI	GGATC	2 cut(s)	680, 809
AcsI	RAATTY	3 cut(s)	374, 738, 914
AcuI	CTGAAG	1 cut(s)	1010
AfaI	GTAC	2 cut(s)	848, 902
AgsI	TTSAA	3 cut(s)	142, 542, 1138
AhlI	ACTAGT	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	8 cut(s)	287, 326, 347, 467, 548, 632, 653, 1007
AluI	AGCT	8 cut(s)	287, 326, 347, 467, 548, 632, 653, 1007
Alw21I	GWGCWC	1 cut(s)	454
Alw44I	GTGCAC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	680, 809
Ama87I	CYCGRG	1 cut(s)	1122
AoxI	GGCC	2 cut(s)	710, 883
ApaI	GGGCCC	1 cut(s)	887
ApaLI	GTGCAC	1 cut(s)	450
ApeKI	GCWGC	3 cut(s)	287, 641, 653
ApoI	RAATTY	3 cut(s)	374, 738, 914
AspLEI	GCGC	2 cut(s)	1054, 1079
AspS9I	GGNCC	2 cut(s)	883, 884
AvaI	CYCGRG	1 cut(s)	1122
BaeGI	GKGCMC	2 cut(s)	454, 887
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	301, 887
BauI	CACGAG	1 cut(s)	1055
Bbv12I	GWGCWC	1 cut(s)	454
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	274, 640, 653
BccI	CCATC	3 cut(s)	482, 858, 884
BciVI	GTATCC	1 cut(s)	374
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	5 cut(s)	246, 522, 729, 1004, 1162
BfmI	CTRYAG	1 cut(s)	1155
BfuAI	ACCTGC	2 cut(s)	280, 888
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	4 cut(s)	288, 642, 654, 1075
BlsI	GCNGC	4 cut(s)	289, 643, 655, 1076
BmeT110I	CYCGRG	1 cut(s)	1122
BmgT120I	GGNCC	2 cut(s)	883, 884
BmiI	GGNNCC	4 cut(s)	270, 298, 618, 885
BmsI	GCATC	2 cut(s)	937, 1039
BplI	GAGNNNNNCTC	2 cut(s)	1038, 1070
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	1133
Bsa29I	ATCGAT	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	148, 909
Bse1I	ACTGG	2 cut(s)	183, 967
Bse3DI	GCAATG	1 cut(s)	129
BseCI	ATCGAT	1 cut(s)	442
BseDI	CCNNGG	2 cut(s)	148, 909
BseGI	GGATG	1 cut(s)	850
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	5 cut(s)	130, 255, 709, 870, 1034
BseNI	ACTGG	2 cut(s)	183, 967
BseRI	GAGGAG	2 cut(s)	309, 496
BseSI	GKGCMC	2 cut(s)	454, 887
BseXI	GCAGC	3 cut(s)	274, 640, 653
BseYI	CCCAGC	1 cut(s)	968
BshFI	GGCC	2 cut(s)	712, 885
BshNI	GGYRCC	1 cut(s)	268
BshVI	ATCGAT	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	1122
BsiSI	CCGG	1 cut(s)	1109
BslFI	GGGAC	3 cut(s)	221, 767, 986
BsmFI	GGGAC	3 cut(s)	221, 767, 986
BsmI	GAATGC	2 cut(s)	435, 1144
BsnI	GGCC	2 cut(s)	712, 885
BsoBI	CYCGRG	1 cut(s)	1122
Bsp120I	GGGCCC	1 cut(s)	883
Bsp1286I	GDGCHC	3 cut(s)	301, 454, 887
Bsp143I	GATC	5 cut(s)	439, 443, 685, 814, 1012
BspACI	CCGC	3 cut(s)	33, 717, 1074
BspANI	GGCC	2 cut(s)	712, 885
BspCNI	CTCAG	5 cut(s)	129, 256, 708, 871, 1035
BspDI	ATCGAT	1 cut(s)	442
BspLI	GGNNCC	4 cut(s)	270, 298, 618, 885
BspMI	ACCTGC	2 cut(s)	280, 888
BspPI	GGATC	2 cut(s)	680, 809
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	183, 967
BssECI	CCNNGG	2 cut(s)	148, 909
BssMI	GATC	5 cut(s)	439, 443, 685, 814, 1012
BssSI	CACGAG	1 cut(s)	1055
BssT1I	CCWWGG	2 cut(s)	148, 909
Bst2BI	CACGAG	1 cut(s)	1055
Bst4CI	ACNGT	3 cut(s)	82, 708, 1087
Bst6I	CTCTTC	3 cut(s)	12, 780, 919
BstAPI	GCANNNNNTGC	2 cut(s)	458, 725
BstC8I	GCNNGC	2 cut(s)	390, 1072
BstDEI	CTNAG	5 cut(s)	116, 264, 695, 879, 1043
BstF5I	GGATG	1 cut(s)	850
BstHHI	GCGC	2 cut(s)	1054, 1079
BstKTI	GATC	5 cut(s)	442, 446, 688, 817, 1015
BstMBI	GATC	5 cut(s)	439, 443, 685, 814, 1012
BstNSI	RCATGY	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	1155
BstSLI	GKGCMC	2 cut(s)	454, 887
BstV1I	GCAGC	3 cut(s)	274, 640, 653
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
Bsu15I	ATCGAT	1 cut(s)	442
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	712, 885
BsuTUI	ATCGAT	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	850
BtsI	GCAGTG	2 cut(s)	756, 957
BtsIMutI	CAGTG	6 cut(s)	704, 756, 876, 925, 957, 960
BveI	ACCTGC	2 cut(s)	280, 888
Cac8I	GCNNGC	2 cut(s)	390, 1072
CfoI	GCGC	2 cut(s)	1054, 1079
Cfr13I	GGNCC	2 cut(s)	883, 884
ClaI	ATCGAT	1 cut(s)	442
CseI	GACGC	2 cut(s)	671, 983
Csp6I	GTAC	2 cut(s)	847, 901
CviAII	CATG	3 cut(s)	385, 505, 621
CviQI	GTAC	2 cut(s)	847, 901
DdeI	CTNAG	5 cut(s)	116, 264, 695, 879, 1043
DpnI	GATC	5 cut(s)	441, 445, 687, 816, 1014
DpnII	GATC	5 cut(s)	439, 443, 685, 814, 1012
DraI	TTTAAA	1 cut(s)	280
Eam1104I	CTCTTC	3 cut(s)	12, 780, 919
EarI	CTCTTC	3 cut(s)	12, 780, 919
Eco130I	CCWWGG	2 cut(s)	148, 909
Eco24I	GRGCYC	2 cut(s)	301, 887
Eco57I	CTGAAG	1 cut(s)	1010
Eco88I	CYCGRG	1 cut(s)	1122
EcoO109I	RGGNCCY	2 cut(s)	883, 884
EcoRI	GAATTC	1 cut(s)	914
EcoT14I	CCWWGG	2 cut(s)	148, 909
EcoT38I	GRGCYC	2 cut(s)	301, 887
ErhI	CCWWGG	2 cut(s)	148, 909
FaeI	CATG	3 cut(s)	388, 508, 624
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	3 cut(s)	221, 767, 986
FatI	CATG	3 cut(s)	384, 504, 620
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	820
Fnu4HI	GCNGC	4 cut(s)	288, 642, 654, 1075
FokI	GGATG	1 cut(s)	837
FriOI	GRGCYC	2 cut(s)	301, 887
Fsp4HI	GCNGC	4 cut(s)	288, 642, 654, 1075
FspBI	CTAG	5 cut(s)	246, 522, 729, 1004, 1162
GlaI	GCGC	2 cut(s)	1053, 1078
GluI	GCNGC	4 cut(s)	288, 642, 654, 1075
GsaI	CCCAGC	1 cut(s)	972
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	712, 885
HapII	CCGG	1 cut(s)	1109
HgaI	GACGC	2 cut(s)	671, 983
HhaI	GCGC	2 cut(s)	1054, 1079
Hin1II	CATG	3 cut(s)	388, 508, 624
Hin6I	GCGC	2 cut(s)	1052, 1077
HinP1I	GCGC	2 cut(s)	1052, 1077
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HinfI	GANTC	3 cut(s)	191, 927, 1127
HpaII	CCGG	1 cut(s)	1109
Hpy166II	GTNNAC	5 cut(s)	74, 251, 418, 452, 955
Hpy188I	TCNGA	2 cut(s)	86, 698
Hpy188III	TCNNGA	4 cut(s)	542, 772, 1028, 1124
Hpy8I	GTNNAC	5 cut(s)	74, 251, 418, 452, 955
HpyAV	CCTTC	6 cut(s)	568, 723, 728, 800, 934, 1154
HpyCH4III	ACNGT	3 cut(s)	82, 708, 1087
HpyCH4IV	ACGT	1 cut(s)	496
HpyF3I	CTNAG	5 cut(s)	116, 264, 695, 879, 1043
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	3 cut(s)	388, 508, 624
HspAI	GCGC	2 cut(s)	1052, 1077
Kzo9I	GATC	5 cut(s)	439, 443, 685, 814, 1012
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	3 cut(s)	274, 640, 653
LweI	GCATC	2 cut(s)	937, 1039
MaeI	CTAG	5 cut(s)	246, 522, 729, 1004, 1162
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	4 cut(s)	472, 515, 874, 1087
MalI	GATC	5 cut(s)	441, 445, 687, 816, 1014
MboI	GATC	5 cut(s)	439, 443, 685, 814, 1012
MboII	GAAGA	6 cut(s)	114, 380, 794, 797, 824, 936
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	3 cut(s)	301, 454, 887
MluCI	AATT	7 cut(s)	55, 374, 567, 738, 842, 863, 914
MlyI	GAGTC	1 cut(s)	936
MseI	TTAA	3 cut(s)	279, 566, 861
MspI	CCGG	1 cut(s)	1109
Mva1269I	GAATGC	2 cut(s)	435, 1144
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	5 cut(s)	439, 443, 685, 814, 1012
NlaIII	CATG	3 cut(s)	388, 508, 624
NlaIV	GGNNCC	4 cut(s)	270, 298, 618, 885
NmuCI	GTSAC	2 cut(s)	874, 1087
NspI	RCATGY	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	1122
PaqCI	CACCTGC	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	2 cut(s)	435, 1144
PfeI	GAWTC	2 cut(s)	191, 1127
PkrI	GCNGC	4 cut(s)	289, 643, 655, 1076
PleI	GAGTC	1 cut(s)	935
PpsI	GAGTC	1 cut(s)	935
PspFI	CCCAGC	1 cut(s)	968
PspN4I	GGNNCC	4 cut(s)	270, 298, 618, 885
PspOMI	GGGCCC	1 cut(s)	883
PspPI	GGNCC	2 cut(s)	883, 884
PsuI	RGATCY	1 cut(s)	814
RsaI	GTAC	2 cut(s)	848, 902
RsaNI	GTAC	2 cut(s)	847, 901
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	279, 566, 861
SatI	GCNGC	4 cut(s)	288, 642, 654, 1075
Sau3AI	GATC	5 cut(s)	439, 443, 685, 814, 1012
Sau96I	GGNCC	2 cut(s)	883, 884
SchI	GAGTC	1 cut(s)	936
SduI	GDGCHC	3 cut(s)	301, 454, 887
SfaNI	GCATC	2 cut(s)	937, 1039
SfcI	CTRYAG	1 cut(s)	1155
Sfr274I	CTCGAG	1 cut(s)	1122
SlaI	CTCGAG	1 cut(s)	1122
SmlI	CTYRAG	2 cut(s)	1122, 1148
SmoI	CTYRAG	2 cut(s)	1122, 1148
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	7 cut(s)	55, 374, 567, 738, 842, 863, 914
SsiI	CCGC	3 cut(s)	33, 717, 1074
SspI	AATATT	2 cut(s)	585, 993
SspMI	CTAG	5 cut(s)	246, 522, 729, 1004, 1162
StyI	CCWWGG	2 cut(s)	148, 909
TaaI	ACNGT	3 cut(s)	82, 708, 1087
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	2 cut(s)	442, 1123
TasI	AATT	7 cut(s)	55, 374, 567, 738, 842, 863, 914
TauI	GCSGC	1 cut(s)	1077
TfiI	GAWTC	2 cut(s)	191, 1127
Tru1I	TTAA	3 cut(s)	279, 566, 861
Tru9I	TTAA	3 cut(s)	279, 566, 861
TscAI	CASTG	6 cut(s)	711, 763, 883, 925, 957, 967
TseFI	GTSAC	2 cut(s)	874, 1087
TseI	GCWGC	3 cut(s)	287, 641, 653
Tsp45I	GTSAC	2 cut(s)	874, 1087
TspDTI	ATGAA	5 cut(s)	246, 387, 493, 840, 953
TspGWI	ACGGA	3 cut(s)	91, 629, 818
TspRI	CASTG	6 cut(s)	711, 763, 883, 925, 957, 967
VneI	GTGCAC	1 cut(s)	450
XapI	RAATTY	3 cut(s)	374, 738, 914
XceI	RCATGY	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	1122
XspI	CTAG	5 cut(s)	246, 522, 729, 1004, 1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.