Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010271

Physical Location & Seq

Genomic Coordinates Reverse (-)

25085765 .. 25091454

Gene Structure 5690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0260700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAAACGAGGCAGGGAGAGCGGAGAATGAAGATGACGACCTCAAAGTTGGAAGCGAGCACTGTGGACGTTTCGCAGTTCCAGCACACCCCTTTTTACTGTGAGGAGAATGTGTACTTGCTTTGCAAGGAATTGAGCAAAAAGGGAATCGCAGATGAAAAAAGCTCTGATCTTTTTGTGGTTTTGATTTCCAACGAAAAGAAACAGATACCATTGTGGCATCAAAAGGCGAGCCACCGAGCAGATGGAGTTGTTCTCTGGGATTATCATGTCATTTGCGTGCAGAGAAAAGTTGGTGGAGGTGACTCACCCTCACAGCATTTAGTGTGGGATTTGGATTCAACTCTTTCGTTTCCTTGTGCTTTAGCAACTTATGTCTCCGAAACCATCCGCCCCACATTTCAGACCTTCCCTGAATTCCAGAGGTATTTCCGGATTGTGCATGCCCCAATATTCCTCCGTAACTTTGCATCTGATAGAAGGCACATGAAAGATTCTCTTGGCGAATGGCTTCATCAGCCTCCTCTATATGAGCCGATTGTTTCTGAAGATGGAACTGTACATAACCTGAATGACTACCTTGACATCAGGGCTACAGATGTTGTGAAGGAGGCAGGTCATGATATGACCGATCCAGTTTTTACCCAAAAGCTTGGCGTGGTTGTAGGTGAAAATCAACTGGAGGAATTCTTTTCCAAAATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0030054 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046835 GO:0055044 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

235

Amino Acids

27.07

Weight (kDa)

5.8

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nt_Gln_amidase	PF09764	29 - 231	1.6e-66	N-terminal glutamine amidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66430
fragaria_vesca	FvH4_1g28890 FvH4_1g28890 FvH4_1g28890 FvH4_1g28890
malus_domestica	MD09G1262800.v1.1 MD17G1257700.v1.1
prunus_persica	Prupe.3G160500_v2.0.a1 Prupe.3G160500_v2.0.a1
pyrus_communis	pycom09g17710 pycom17g25980
rosa_chinensis	RchiOBHm_Chr3g0493391
rosa_laevigata	RLG00000022716
rosa_multiflora	Rmu_sc0000828.1_g000020 Rmu_sc0010338.1_g000012
rosa_roxburghii	Rroxscaffold_6G00391620
rosa_rugosa	Rorug03G0260700
rosa_samantha	Rh3AG309800 Rh3CG343400 Rh3DG345000
rosa_wichuraiana	Rw3G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	432
AciI	CCGC	2 cut(s)	22, 391
AclWI	GGATC	1 cut(s)	626
AcsI	RAATTY	2 cut(s)	416, 686
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	2 cut(s)	116, 561
AgsI	TTSAA	1 cut(s)	342
AluBI	AGCT	2 cut(s)	165, 652
AluI	AGCT	2 cut(s)	165, 652
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	626
Aor13HI	TCCGGA	1 cut(s)	432
ApoI	RAATTY	2 cut(s)	416, 686
Asp700I	GAANNNNTTC	1 cut(s)	510
AsuHPI	GGTGA	3 cut(s)	300, 314, 680
BaeI	ACNNNNGTAYC	2 cut(s)	200, 233
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	3 cut(s)	239, 395, 545
BcoDI	GTCTC	1 cut(s)	382
BfmI	CTRYAG	1 cut(s)	594
BfuAI	ACCTGC	1 cut(s)	605
BmsI	GCATC	2 cut(s)	229, 479
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
BpmI	CTGGAG	1 cut(s)	701
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse1I	ACTGG	2 cut(s)	635, 684
BseAI	TCCGGA	1 cut(s)	432
BseGI	GGATG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	635, 684
BseRI	GAGGAG	2 cut(s)	119, 513
BsgI	GTGCAG	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	559
Bsp143I	GATC	2 cut(s)	169, 631
BspACI	CCGC	2 cut(s)	22, 391
BspEI	TCCGGA	1 cut(s)	432
BspHI	TCATGA	1 cut(s)	619
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	1 cut(s)	626
BsrBI	CCGCTC	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	635, 684
BssMI	GATC	2 cut(s)	169, 631
Bst4CI	ACNGT	3 cut(s)	64, 101, 559
BstAUI	TGTACA	1 cut(s)	559
BstC8I	GCNNGC	4 cut(s)	58, 232, 281, 444
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	2 cut(s)	172, 634
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	2 cut(s)	169, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 82, 517
BstNSI	RCATGY	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	594
BstXI	CCANNNNNNTGG	1 cut(s)	653
BtsCI	GGATG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	60
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	4 cut(s)	58, 232, 281, 444
CciI	TCATGA	1 cut(s)	619
Csp6I	GTAC	2 cut(s)	115, 560
CviAII	CATG	4 cut(s)	269, 443, 487, 620
CviJI	RGCY	7 cut(s)	165, 234, 511, 520, 535, 593, 652
CviKI_1	RGCY	7 cut(s)	165, 234, 511, 520, 535, 593, 652
CviQI	GTAC	2 cut(s)	115, 560
DpnI	GATC	2 cut(s)	171, 633
DpnII	GATC	2 cut(s)	169, 631
EciI	GGCGGA	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	567
EcoRI	GAATTC	2 cut(s)	416, 686
FaeI	CATG	4 cut(s)	272, 446, 490, 623
FaiI	YATR	9 cut(s)	270, 375, 444, 488, 529, 531, 564, 621, 626
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FatI	CATG	4 cut(s)	268, 442, 486, 619
FokI	GGATG	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	701
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	4 cut(s)	272, 446, 490, 623
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	4 cut(s)	147, 305, 338, 494
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	3 cut(s)	300, 314, 680
Hpy166II	GTNNAC	2 cut(s)	67, 115
Hpy188I	TCNGA	5 cut(s)	169, 382, 405, 475, 547
Hpy188III	TCNNGA	3 cut(s)	421, 433, 620
Hpy8I	GTNNAC	2 cut(s)	67, 115
HpyAV	CCTTC	3 cut(s)	418, 474, 601
HpyCH4III	ACNGT	3 cut(s)	64, 101, 559
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	4 cut(s)	126, 283, 442, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 82, 517
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	272, 446, 490, 623
Kpn2I	TCCGGA	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	169, 631
LweI	GCATC	2 cut(s)	229, 479
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	2 cut(s)	302, 461
MalI	GATC	2 cut(s)	171, 633
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	2 cut(s)	169, 631
MboII	GAAGA	2 cut(s)	43, 560
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	4 cut(s)	131, 416, 686, 699
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	30, 216
MroI	TCCGGA	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	3 cut(s)	19, 82, 517
NdeII	GATC	2 cut(s)	169, 631
NlaIII	CATG	4 cut(s)	272, 446, 490, 623
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	446
PaeI	GCATGC	1 cut(s)	446
PagI	TCATGA	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	147, 338, 494
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
RsaI	GTAC	2 cut(s)	116, 561
RsaNI	GTAC	2 cut(s)	115, 560
RseI	CAYNNNNRTG	1 cut(s)	278
Sau3AI	GATC	2 cut(s)	169, 631
SchI	GAGTC	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	62
SfaNI	GCATC	2 cut(s)	229, 479
SfcI	CTRYAG	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	278
SphI	GCATGC	1 cut(s)	446
Sse9I	AATT	4 cut(s)	131, 416, 686, 699
SsiI	CCGC	2 cut(s)	22, 391
SspI	AATATT	1 cut(s)	453
TaaI	ACNGT	3 cut(s)	64, 101, 559
TaiI	ACGT	1 cut(s)	72
TaqII	GACCGA	1 cut(s)	644
TasI	AATT	4 cut(s)	131, 416, 686, 699
TatI	WGTACW	2 cut(s)	114, 559
TfiI	GAWTC	3 cut(s)	147, 338, 494
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	4 cut(s)	44, 171, 503, 503
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	2 cut(s)	416, 686
XceI	RCATGY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.