Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010271

Physical Location & Seq

Genomic Coordinates Reverse (-)

10401073 .. 10406466

Gene Structure 5394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGACAAGACGAGAAATATTAAGCTACTCTCGACTCCCGCTTTGCTTTCTCCGTTGGCAATTGATGTTGAATTTGTCGTCGATTTTCCCAAGGATCCTACACTTATCCTGAAGCTATTATTGGAATATACTCGATTCTGCGATGCAATCCACCCTCCAAGTGTAGGAAAAGCATTTCCTGGAGATGCAGTCGTAGACACGAAAGAATCCCCCCTTGTGGTTTGTTTCGGGGAGATGCTAATTGATTTCGTCCCAACCACCAATGGACTTTCATTGGCCGAAGCACCTGCATTTAAAAAAGCTGCTGGAGGAGCCCCTGCTAACGTTGCAGTTGGCATAGCTCGTCTTGGTGGCTCATCAGCCTTTATTGGGAAGGTGGGGGAAGATGAATTTGGATACATGCTTGCTGATATATTAAAGGAGAATAATGTCAACAATGAAGGGATGCGTTTTGATCCTGGTGCACGAACTGCTTTAGCATTTGTTACGTTGAGGAGTGATGGGGAACGTGAATTCATGTTTTATCGTAATCCTAGTGCTGATATGTTGCTTCAAGAAGCTGAACTTGATTTTGATTTAATAAGGAAGGCAAAAATCTTGCACTATGGTTCTATAAGTCTTATTACAGAACCATGCAAGTCAGCCCATATTGCAGCAGCAAAAGCTGCAAAGGAAGCTGGCGTTGTTTTATCATATGATCCCAACCTCAGGCTTCCGTTGTGGCGTTCTGCAAAGAGTGCCCGAGAAGGAATTTTGAGTATATGGGAGACTGCTGATATTATCAAGATAAGTGAAGAAGAGATTTCTTTTCTAACAGAAGGAGAAGATCCATTTGATGAAACTGTCGTTCGCAAATTGTACCATCCAAATCTTAATTTACTACTTGTCACTGAAGGGCCCGATGGCTGTAGATACTACACCAAGGAGTTCAGTGGAAGAGTCAAGGGTATGAAGGTGGATGCCGTGGACACAACGGGTGCTGGGGATGCATTTGTAGCTGGAATACTATCCCACCTAGCAGTTGATCTCTCTTTGATTCAGAACGAGGACAAACTGAGAGATGCACTTATGTTTGCTAATGCTTGTGGTGCTTTGACTGTGACGGGAAGAGGAGCTATTCCTGCTTTGCCAACTAGAGAAGCTGTGCTGGATGTCATGTTCAAGCCTGTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0030054 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046835 GO:0055044 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

392

Amino Acids

42.31

Weight (kDa)

5.01

Isoelectric Point (pI)

29.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	72 - 378	1.2e-75	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66430
fragaria_vesca	FvH4_1g28890 FvH4_1g28890 FvH4_1g28890 FvH4_1g28890
malus_domestica	MD09G1262800.v1.1 MD17G1257700.v1.1
prunus_persica	Prupe.3G160500_v2.0.a1 Prupe.3G160500_v2.0.a1
pyrus_communis	pycom09g17710 pycom17g25980
rosa_chinensis	RchiOBHm_Chr3g0493391
rosa_laevigata	RLG00000022716
rosa_multiflora	Rmu_sc0000828.1_g000020 Rmu_sc0010338.1_g000012
rosa_roxburghii	Rroxscaffold_6G00391620
rosa_rugosa	Rorug03G0260700
rosa_samantha	Rh3AG309800 Rh3CG343400 Rh3DG345000
rosa_wichuraiana	Rw3G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	1 cut(s)	39
AclI	AACGTT	1 cut(s)	324
AclWI	GGATC	5 cut(s)	89, 102, 449, 692, 821
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	4 cut(s)	71, 389, 512, 750
AcuI	CTGAAG	2 cut(s)	131, 912
AfaI	GTAC	1 cut(s)	860
AfiI	CCNNNNNNNGG	4 cut(s)	164, 217, 369, 708
AgsI	TTSAA	3 cut(s)	71, 554, 1162
AjnI	CCWGG	2 cut(s)	178, 457
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 375, 407
AloI	GAACNNNNNNTCC	2 cut(s)	1142, 1174
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	761
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	5 cut(s)	89, 102, 449, 692, 821
Ama87I	CYCGRG	1 cut(s)	741
AoxI	GGCC	2 cut(s)	276, 896
ApaI	GGGCCC	1 cut(s)	900
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	4 cut(s)	302, 653, 656, 665
ApoI	RAATTY	4 cut(s)	71, 389, 512, 750
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
AspS9I	GGNCC	2 cut(s)	896, 897
AvaI	CYCGRG	1 cut(s)	741
AxyI	CCTNAGG	1 cut(s)	707
BaeGI	GKGCMC	3 cut(s)	466, 742, 900
BamHI	GGATCC	1 cut(s)	94
BanII	GRGCYC	2 cut(s)	316, 900
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	4 cut(s)	289, 652, 665, 668
BccI	CCATC	3 cut(s)	494, 870, 896
BceAI	ACGGC	1 cut(s)	947
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	2 cut(s)	180, 459
BciVI	GTATCC	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	761
BfaI	CTAG	3 cut(s)	534, 1016, 1134
BfmI	CTRYAG	2 cut(s)	907, 1167
BfuAI	ACCTGC	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	389
BisI	GCNGC	4 cut(s)	303, 654, 657, 666
BlsI	GCNGC	4 cut(s)	304, 655, 658, 667
Bme1390I	CCNGG	2 cut(s)	180, 459
BmeT110I	CYCGRG	1 cut(s)	741
BmgT120I	GGNCC	2 cut(s)	896, 897
BmiI	GGNNCC	3 cut(s)	96, 313, 898
BmrFI	CCNGG	2 cut(s)	180, 459
BmsI	GCATC	7 cut(s)	133, 175, 225, 435, 949, 976, 1051
BpmI	CTGGAG	2 cut(s)	201, 327
BsaJI	CCNNGG	3 cut(s)	90, 921, 963
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 217, 369, 708
Bse21I	CCTNAGG	1 cut(s)	707
BseBI	CCWGG	2 cut(s)	180, 459
BseDI	CCNNGG	3 cut(s)	90, 921, 963
BseGI	GGATG	5 cut(s)	450, 862, 964, 991, 1156
BseLI	CCNNNNNNNGG	4 cut(s)	164, 217, 369, 708
BseMII	CTCAG	2 cut(s)	721, 1046
BseRI	GAGGAG	3 cut(s)	324, 508, 1125
BseSI	GKGCMC	3 cut(s)	466, 742, 900
BseXI	GCAGC	4 cut(s)	289, 652, 665, 668
BseYI	CCCAGC	1 cut(s)	980
BshFI	GGCC	2 cut(s)	278, 898
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	741
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	4 cut(s)	164, 217, 369, 708
BsmAI	GTCTC	1 cut(s)	761
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	278, 898
BsoBI	CYCGRG	1 cut(s)	741
Bsp120I	GGGCCC	1 cut(s)	896
Bsp1286I	GDGCHC	4 cut(s)	316, 466, 742, 900
Bsp143I	GATC	5 cut(s)	94, 454, 697, 826, 1024
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	278, 898
BspCNI	CTCAG	2 cut(s)	720, 1047
BspLI	GGNNCC	3 cut(s)	96, 313, 898
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	5 cut(s)	89, 102, 449, 692, 821
BssECI	CCNNGG	3 cut(s)	90, 921, 963
BssMI	GATC	5 cut(s)	94, 454, 697, 826, 1024
BssT1I	CCWWGG	2 cut(s)	90, 921
Bst2UI	CCWGG	2 cut(s)	180, 459
Bst4CI	ACNGT	2 cut(s)	844, 1099
Bst6I	CTCTTC	3 cut(s)	792, 931, 1102
BstAPI	GCANNNNNTGC	3 cut(s)	470, 665, 737
BstC8I	GCNNGC	2 cut(s)	405, 679
BstDEI	CTNAG	2 cut(s)	707, 1055
BstDSI	CCRYGG	1 cut(s)	963
BstF5I	GGATG	5 cut(s)	450, 862, 964, 991, 1156
BstKTI	GATC	5 cut(s)	97, 457, 700, 829, 1027
BstMAI	GTCTC	1 cut(s)	761
BstMBI	GATC	5 cut(s)	94, 454, 697, 826, 1024
BstNI	CCWGG	2 cut(s)	180, 459
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	2 cut(s)	178, 457
BstSFI	CTRYAG	2 cut(s)	907, 1167
BstSLI	GKGCMC	3 cut(s)	466, 742, 900
BstV1I	GCAGC	4 cut(s)	289, 652, 665, 668
BstX2I	RGATCY	2 cut(s)	94, 826
BstYI	RGATCY	2 cut(s)	94, 826
Bsu36I	CCTNAGG	1 cut(s)	707
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	278, 898
BtgI	CCRYGG	1 cut(s)	963
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	5 cut(s)	450, 862, 964, 991, 1156
BtsIMutI	CAGTG	2 cut(s)	888, 937
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	405, 679
Cfr13I	GGNCC	2 cut(s)	896, 897
Csp6I	GTAC	1 cut(s)	859
CviAII	CATG	4 cut(s)	400, 517, 633, 1156
CviQI	GTAC	1 cut(s)	859
DdeI	CTNAG	2 cut(s)	707, 1055
DpnI	GATC	5 cut(s)	96, 456, 699, 828, 1026
DpnII	GATC	5 cut(s)	94, 454, 697, 826, 1024
DraI	TTTAAA	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	3 cut(s)	792, 931, 1102
EarI	CTCTTC	3 cut(s)	792, 931, 1102
Eco130I	CCWWGG	2 cut(s)	90, 921
Eco24I	GRGCYC	2 cut(s)	316, 900
Eco57I	CTGAAG	2 cut(s)	131, 912
Eco81I	CCTNAGG	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	741
EcoO109I	RGGNCCY	1 cut(s)	896
EcoRI	GAATTC	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	178, 457
EcoT14I	CCWWGG	2 cut(s)	90, 921
EcoT22I	ATGCAT	1 cut(s)	991
EcoT38I	GRGCYC	2 cut(s)	316, 900
ErhI	CCWWGG	2 cut(s)	90, 921
FaeI	CATG	4 cut(s)	403, 520, 636, 1159
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	4 cut(s)	399, 516, 632, 1155
FauI	CCCGC	1 cut(s)	46
FauNDI	CATATG	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	4 cut(s)	303, 654, 657, 666
FokI	GGATG	5 cut(s)	457, 849, 971, 998, 1163
FriOI	GRGCYC	2 cut(s)	316, 900
Fsp4HI	GCNGC	4 cut(s)	303, 654, 657, 666
FspBI	CTAG	3 cut(s)	534, 1016, 1134
GluI	GCNGC	4 cut(s)	303, 654, 657, 666
GsaI	CCCAGC	1 cut(s)	984
GsuI	CTGGAG	2 cut(s)	201, 327
HaeIII	GGCC	2 cut(s)	278, 898
Hin1II	CATG	4 cut(s)	403, 520, 636, 1159
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	5 cut(s)	34, 135, 206, 939, 1036
Hpy166II	GTNNAC	4 cut(s)	196, 433, 464, 967
Hpy188I	TCNGA	1 cut(s)	1041
Hpy188III	TCNNGA	4 cut(s)	31, 109, 554, 784
Hpy8I	GTNNAC	4 cut(s)	196, 433, 464, 967
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	7 cut(s)	367, 434, 580, 740, 812, 887, 946
HpyCH4III	ACNGT	2 cut(s)	844, 1099
HpyCH4IV	ACGT	3 cut(s)	324, 488, 508
HpyF3I	CTNAG	2 cut(s)	707, 1055
HpySE526I	ACGT	3 cut(s)	324, 488, 508
Hsp92II	CATG	4 cut(s)	403, 520, 636, 1159
Kzo9I	GATC	5 cut(s)	94, 454, 697, 826, 1024
LmnI	GCTCC	2 cut(s)	311, 1112
Lsp1109I	GCAGC	4 cut(s)	289, 652, 665, 668
LweI	GCATC	7 cut(s)	133, 175, 225, 435, 949, 976, 1051
MaeI	CTAG	3 cut(s)	534, 1016, 1134
MaeII	ACGT	3 cut(s)	324, 488, 508
MaeIII	GTNAC	3 cut(s)	484, 886, 1099
MalI	GATC	5 cut(s)	96, 456, 699, 828, 1026
MboI	GATC	5 cut(s)	94, 454, 697, 826, 1024
MboII	GAAGA	6 cut(s)	395, 806, 809, 836, 948, 1119
MfeI	CAATTG	1 cut(s)	60
MflI	RGATCY	2 cut(s)	94, 826
MhlI	GDGCHC	4 cut(s)	316, 466, 742, 900
MluCI	AATT	8 cut(s)	60, 71, 240, 389, 512, 750, 854, 874
MlyI	GAGTC	2 cut(s)	28, 948
MnlI	CCTC	6 cut(s)	165, 302, 486, 716, 1039, 1103
Mph1103I	ATGCAT	1 cut(s)	991
MseI	TTAA	5 cut(s)	21, 294, 416, 578, 873
MspR9I	CCNGG	2 cut(s)	180, 459
MunI	CAATTG	1 cut(s)	60
MvaI	CCWGG	2 cut(s)	180, 459
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	5 cut(s)	94, 454, 697, 826, 1024
NlaIII	CATG	4 cut(s)	403, 520, 636, 1159
NlaIV	GGNNCC	3 cut(s)	96, 313, 898
NmuCI	GTSAC	2 cut(s)	886, 1099
NsiI	ATGCAT	1 cut(s)	991
NspI	RCATGY	1 cut(s)	403
PaqCI	CACCTGC	1 cut(s)	295
PfeI	GAWTC	3 cut(s)	135, 206, 1036
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	304, 655, 658, 667
PleI	GAGTC	2 cut(s)	28, 947
PpsI	GAGTC	2 cut(s)	28, 947
Psp1406I	AACGTT	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	178, 457
PspFI	CCCAGC	1 cut(s)	980
PspGI	CCWGG	2 cut(s)	178, 457
PspN4I	GGNNCC	3 cut(s)	96, 313, 898
PspOMI	GGGCCC	1 cut(s)	896
PspPI	GGNCC	2 cut(s)	896, 897
PsuI	RGATCY	2 cut(s)	94, 826
RsaI	GTAC	1 cut(s)	860
RsaNI	GTAC	1 cut(s)	859
SaqAI	TTAA	5 cut(s)	21, 294, 416, 578, 873
SatI	GCNGC	4 cut(s)	303, 654, 657, 666
Sau3AI	GATC	5 cut(s)	94, 454, 697, 826, 1024
Sau96I	GGNCC	2 cut(s)	896, 897
SchI	GAGTC	2 cut(s)	28, 948
ScrFI	CCNGG	2 cut(s)	180, 459
SduI	GDGCHC	4 cut(s)	316, 466, 742, 900
SfaNI	GCATC	7 cut(s)	133, 175, 225, 435, 949, 976, 1051
SfcI	CTRYAG	2 cut(s)	907, 1167
Sse9I	AATT	8 cut(s)	60, 71, 240, 389, 512, 750, 854, 874
SsiI	CCGC	1 cut(s)	39
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	534, 1016, 1134
StyD4I	CCNGG	2 cut(s)	178, 457
StyI	CCWWGG	2 cut(s)	90, 921
TaaI	ACNGT	2 cut(s)	844, 1099
TaiI	ACGT	3 cut(s)	327, 491, 511
TaqI	TCGA	3 cut(s)	32, 81, 133
TasI	AATT	8 cut(s)	60, 71, 240, 389, 512, 750, 854, 874
TfiI	GAWTC	3 cut(s)	135, 206, 1036
Tru1I	TTAA	5 cut(s)	21, 294, 416, 578, 873
Tru9I	TTAA	5 cut(s)	21, 294, 416, 578, 873
TscAI	CASTG	2 cut(s)	895, 937
TseFI	GTSAC	2 cut(s)	886, 1099
TseI	GCWGC	4 cut(s)	302, 653, 656, 665
Tsp45I	GTSAC	2 cut(s)	886, 1099
TspDTI	ATGAA	6 cut(s)	261, 402, 453, 505, 852, 965
TspGWI	ACGGA	2 cut(s)	42, 705
TspRI	CASTG	2 cut(s)	895, 937
VneI	GTGCAC	1 cut(s)	462
XapI	RAATTY	4 cut(s)	71, 389, 512, 750
XceI	RCATGY	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	3 cut(s)	534, 1016, 1134
Zsp2I	ATGCAT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.