Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0010271

Physical Location & Seq

Genomic Coordinates Forward (+)

38797595 .. 38801674

Gene Structure 4080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG343400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCTAATTGATTTCGTCCCAACCACCAATGGACTTTCATTGGCCGAAGCACCTGCATTTAAAAAAGCTGCTGGAGGAGCCCCTGCTAATGTTGCAGTTGGCATAGCTCGTCTTGGTGGCTCATCAGCCTTTATTGGGAAGGTGGGCGAAGATGAATTTGGATACATGCTTGCTGATATATTAAAGGAGAATAATGTCAACAATGAAGGGATGCGTTTTGATCCTGGTGCACGAACTGCTTTAGCATTTGTTACGTTGAGGAGTGATGGGGAACGTGAGTTCATGTTTTATCGTAATCCTAGTGCTGATATGTTGCTTCAAGAAGCTGAACTTGATTTTGATTTAATAAGGAAGGCAAAAATCTTGCACTATGGTTCTATAAGTCTTATTACAGAACCATGCAAATCCGCCCATATTGCAGCAGCAAAAGCTGCAAAGGAAGCTGGTGTTGTTTTATCATATGATCCCAACCTCAGGCTTCCGTTGTGGCCTTCTGCAAAGAGTGCCCGAGAAGGAATTTTGAGTATATGGGAGACTGCTGATATTATTAAGGTAAGTGAAGAAGAGATTTCTTTTCTAACAGAAGGAGAAGATCCATTTGATGAAACTGTCGTTCGCAAATTGTACCATCCAAATCTTAATTTACTACTTGTCACTGAAGGCCCCGATGGTTGTAGATACTACACCAAGGAGTTCAGTGGAAGAGTCAAGGGTATGAAGGTAGATGCCGTGGACACAACGGGTGCTGGGGATGCATTTGTAGCTGGAATACTATCTCAACTAGCAGTTGATCTCTCTTTGATTCAGAATGAGGACAAACTGAGAGATGCACTTCTGTTTGCTAATGCTTGTGGTGCTTTGACTGTGACGGGAAGAGGAGCTATTCCGGCTTTGCCAACTAGAGAAGCTGTGCTGGATGTCATGTTCAAGTCTGTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0030054 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046835 GO:0055044 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

313

Amino Acids

33.68

Weight (kDa)

4.92

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	2 - 300	2.5e-73	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66430
fragaria_vesca	FvH4_1g28890 FvH4_1g28890 FvH4_1g28890 FvH4_1g28890
malus_domestica	MD09G1262800.v1.1 MD17G1257700.v1.1
prunus_persica	Prupe.3G160500_v2.0.a1 Prupe.3G160500_v2.0.a1
pyrus_communis	pycom09g17710 pycom17g25980
rosa_chinensis	RchiOBHm_Chr3g0493391
rosa_laevigata	RLG00000022716
rosa_multiflora	Rmu_sc0000828.1_g000020 Rmu_sc0010338.1_g000012
rosa_roxburghii	Rroxscaffold_6G00391620
rosa_rugosa	Rorug03G0260700
rosa_samantha	Rh3AG309800 Rh3CG343400 Rh3DG345000
rosa_wichuraiana	Rw3G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	61
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	3 cut(s)	215, 458, 587
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	155, 516
AcuI	CTGAAG	1 cut(s)	678
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	2 cut(s)	135, 474
AgsI	TTSAA	2 cut(s)	320, 928
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AloI	GAACNNNNNNTCC	4 cut(s)	263, 295, 908, 940
AluBI	AGCT	8 cut(s)	68, 107, 326, 431, 443, 764, 881, 908
AluI	AGCT	8 cut(s)	68, 107, 326, 431, 443, 764, 881, 908
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	527
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	3 cut(s)	215, 458, 587
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	3 cut(s)	42, 488, 661
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	4 cut(s)	68, 419, 422, 431
ApoI	RAATTY	2 cut(s)	155, 516
AspS9I	GGNCC	1 cut(s)	662
AvaI	CYCGRG	1 cut(s)	507
AxyI	CCTNAGG	1 cut(s)	473
BaeGI	GKGCMC	2 cut(s)	232, 508
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	4 cut(s)	55, 418, 431, 434
BccI	CCATC	3 cut(s)	260, 636, 662
BceAI	ACGGC	1 cut(s)	713
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	3 cut(s)	300, 782, 900
BfuAI	ACCTGC	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	155
BisI	GCNGC	4 cut(s)	69, 420, 423, 432
BlsI	GCNGC	4 cut(s)	70, 421, 424, 433
Bme1390I	CCNGG	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	662
BmiI	GGNNCC	2 cut(s)	79, 664
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	4 cut(s)	201, 715, 742, 817
BpmI	CTGGAG	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	687, 729
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 474
Bse21I	CCTNAGG	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	687, 729
BseGI	GGATG	4 cut(s)	216, 628, 757, 922
BseLI	CCNNNNNNNGG	2 cut(s)	135, 474
BseMII	CTCAG	2 cut(s)	487, 812
BseRI	GAGGAG	3 cut(s)	90, 274, 891
BseSI	GKGCMC	2 cut(s)	232, 508
BseXI	GCAGC	4 cut(s)	55, 418, 431, 434
BseYI	CCCAGC	1 cut(s)	746
BshFI	GGCC	3 cut(s)	44, 490, 663
BsiHKAI	GWGCWC	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	887
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	2 cut(s)	135, 474
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	2
BsnI	GGCC	3 cut(s)	44, 490, 663
BsoBI	CYCGRG	1 cut(s)	507
Bsp1286I	GDGCHC	3 cut(s)	82, 232, 508
Bsp143I	GATC	4 cut(s)	220, 463, 592, 790
BspACI	CCGC	1 cut(s)	408
BspANI	GGCC	3 cut(s)	44, 490, 663
BspCNI	CTCAG	2 cut(s)	486, 813
BspLI	GGNNCC	2 cut(s)	79, 664
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	3 cut(s)	215, 458, 587
BssECI	CCNNGG	2 cut(s)	687, 729
BssMI	GATC	4 cut(s)	220, 463, 592, 790
BssT1I	CCWWGG	1 cut(s)	687
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	610, 865
Bst6I	CTCTTC	3 cut(s)	558, 697, 868
BstAPI	GCANNNNNTGC	3 cut(s)	236, 431, 503
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	3 cut(s)	473, 821, 939
BstDSI	CCRYGG	1 cut(s)	729
BstF5I	GGATG	4 cut(s)	216, 628, 757, 922
BstKTI	GATC	4 cut(s)	223, 466, 595, 793
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	4 cut(s)	220, 463, 592, 790
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	223
BstSLI	GKGCMC	2 cut(s)	232, 508
BstV1I	GCAGC	4 cut(s)	55, 418, 431, 434
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
Bsu36I	CCTNAGG	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	44, 490, 663
BtgI	CCRYGG	1 cut(s)	729
BtsCI	GGATG	4 cut(s)	216, 628, 757, 922
BtsIMutI	CAGTG	2 cut(s)	654, 703
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	662
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	4 cut(s)	166, 283, 399, 922
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	3 cut(s)	473, 821, 939
DpnI	GATC	4 cut(s)	222, 465, 594, 792
DpnII	GATC	4 cut(s)	220, 463, 592, 790
DraI	TTTAAA	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	3 cut(s)	558, 697, 868
EarI	CTCTTC	3 cut(s)	558, 697, 868
EciI	GGCGGA	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	678
Eco81I	CCTNAGG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	687
EcoT22I	ATGCAT	1 cut(s)	757
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	4 cut(s)	169, 286, 402, 925
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	4 cut(s)	165, 282, 398, 921
FauNDI	CATATG	1 cut(s)	460
Fnu4HI	GCNGC	4 cut(s)	69, 420, 423, 432
FokI	GGATG	4 cut(s)	223, 615, 764, 929
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	4 cut(s)	69, 420, 423, 432
FspBI	CTAG	3 cut(s)	300, 782, 900
GluI	GCNGC	4 cut(s)	69, 420, 423, 432
GsaI	CCCAGC	1 cut(s)	750
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	44, 490, 663
HapII	CCGG	1 cut(s)	887
Hin1II	CATG	4 cut(s)	169, 286, 402, 925
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	705, 802
HpaII	CCGG	1 cut(s)	887
Hpy166II	GTNNAC	3 cut(s)	199, 230, 733
Hpy188I	TCNGA	1 cut(s)	807
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	3 cut(s)	199, 230, 733
HpyAV	CCTTC	8 cut(s)	133, 200, 346, 501, 506, 578, 653, 712
HpyCH4III	ACNGT	2 cut(s)	610, 865
HpyCH4IV	ACGT	2 cut(s)	254, 274
HpyF3I	CTNAG	3 cut(s)	473, 821, 939
HpySE526I	ACGT	2 cut(s)	254, 274
Hsp92II	CATG	4 cut(s)	169, 286, 402, 925
Kzo9I	GATC	4 cut(s)	220, 463, 592, 790
LmnI	GCTCC	2 cut(s)	77, 878
Lsp1109I	GCAGC	4 cut(s)	55, 418, 431, 434
LweI	GCATC	4 cut(s)	201, 715, 742, 817
MaeI	CTAG	3 cut(s)	300, 782, 900
MaeII	ACGT	2 cut(s)	254, 274
MaeIII	GTNAC	3 cut(s)	250, 652, 865
MalI	GATC	4 cut(s)	222, 465, 594, 792
MboI	GATC	4 cut(s)	220, 463, 592, 790
MboII	GAAGA	6 cut(s)	161, 572, 575, 602, 714, 885
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	3 cut(s)	82, 232, 508
MluCI	AATT	5 cut(s)	6, 155, 516, 620, 640
MlyI	GAGTC	1 cut(s)	714
MnlI	CCTC	5 cut(s)	68, 252, 482, 805, 869
Mph1103I	ATGCAT	1 cut(s)	757
MseI	TTAA	5 cut(s)	60, 182, 344, 549, 639
MspI	CCGG	1 cut(s)	887
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	4 cut(s)	220, 463, 592, 790
NlaIII	CATG	4 cut(s)	169, 286, 402, 925
NlaIV	GGNNCC	2 cut(s)	79, 664
NmuCI	GTSAC	2 cut(s)	652, 865
NsiI	ATGCAT	1 cut(s)	757
NspI	RCATGY	1 cut(s)	169
PaqCI	CACCTGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	802
PkrI	GCNGC	4 cut(s)	70, 421, 424, 433
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
Psp6I	CCWGG	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	79, 664
PspPI	GGNCC	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
SaqAI	TTAA	5 cut(s)	60, 182, 344, 549, 639
SatI	GCNGC	4 cut(s)	69, 420, 423, 432
Sau3AI	GATC	4 cut(s)	220, 463, 592, 790
Sau96I	GGNCC	1 cut(s)	662
SchI	GAGTC	1 cut(s)	714
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	3 cut(s)	82, 232, 508
SfaNI	GCATC	4 cut(s)	201, 715, 742, 817
Sse9I	AATT	5 cut(s)	6, 155, 516, 620, 640
SsiI	CCGC	1 cut(s)	408
SspMI	CTAG	3 cut(s)	300, 782, 900
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	687
TaaI	ACNGT	2 cut(s)	610, 865
TaiI	ACGT	2 cut(s)	257, 277
TasI	AATT	5 cut(s)	6, 155, 516, 620, 640
TfiI	GAWTC	1 cut(s)	802
Tru1I	TTAA	5 cut(s)	60, 182, 344, 549, 639
Tru9I	TTAA	5 cut(s)	60, 182, 344, 549, 639
TscAI	CASTG	2 cut(s)	661, 703
TseFI	GTSAC	2 cut(s)	652, 865
TseI	GCWGC	4 cut(s)	68, 419, 422, 431
Tsp45I	GTSAC	2 cut(s)	652, 865
TspDTI	ATGAA	6 cut(s)	27, 168, 219, 271, 618, 731
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	2 cut(s)	661, 703
VneI	GTGCAC	1 cut(s)	228
XapI	RAATTY	2 cut(s)	155, 516
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	3 cut(s)	300, 782, 900
Zsp2I	ATGCAT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.