Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010271

Physical Location & Seq

Genomic Coordinates Reverse (-)

10175940 .. 10181566

Gene Structure 5627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCTGTTTATTCAAGTCCCGGTCTTTGGTCGAGTGCTTCTCTCCTCTCTTCGCCTCCTCGCCTATGTTTCACTCGACGGACTCTCAGACCCTCCTCCGCCTTTTCTTCTCCACCTCTCCCTTCCATTGCCCGATCCAATGCCCGAGGAAAAGCATTTCCAGGAGATGCGGTCCTAGACACGAAAGAATCCCCCCTGGTGGTTTGTTTCGGGGAGATGCTGATTGATTTCGTCCCAACCACCAATGGACTTTCATTGGCCGAAGCACCTGCATTTAAAAAAGCTGCTGGAGGGGCCCCTGCTAATGTTGCAGTTGGCATAGCTCGTCTTGGTGGCTCATCAGCCTTTATTGGGAAGGTGGGGGAAGATGAATTTGGATACATGCTTGCTGATATATTAAAGGAGAATAATGTCAACAATGAAGGGATGCGTTTTGATCCTGGTGCACGAACTGCTTTAGCATTTGTTACGTTGAGGAGTGATGGGGAACGTGAATTCATGTTTTATCGTAATCCTAGTGCTGATATGTTGCTTCAAGAAGCTGAACTTGATTTTGATTTAATAAGGAAGGCAAAAATCTTGCACTATGGTTCTATAAGTCTTATTACAGAACCATGCAAGTCAGCCCATATTGCAGCAGCAAAAGCTGCAAAGGAAGCTGGTGTTGTTTTATCATATGATCCCAACCTCAGGCTTCCGTTGTGGCCTTCTGCAAAGAGTGCCCGAGAAGGAATTTTGAGTATATGGGAGACTGCTGATATTATCAAGATAAGTGAAGAAGAGATTTCTTTTCTAACAGAAGGAGAAGATCCATTTGATGAAACTGTCGTTCGCAAATTGTACCATCCAAATCTTAATTTACTACTTGTCACTGAAGGGCCCGATGGCTGTAGATACTACACAAAGGAGTTCAGTGGAAGAGTCAAGGGTATAAAGGTAGATGCTGTGGACACAACAGGTGCTGGGGATGCATTTGTAGCTGGAATACTATCCCAACTAGCAGTTGATCTCTCTTTGATTCAGAACGAGGACAAACTGAGAGATGCACTTCTGTTTGCTAATGCTTGTGGTGCTTTGACTGTGACGGGAAGAGGAGCTATTCCTGCTTTGCCAACTAGAGAAGCTGTGCTGGATGTCATGTTCAAGTCTGTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0030054 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046835 GO:0055044 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

385

Amino Acids

41.27

Weight (kDa)

5.27

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	66 - 372	5.3e-77	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66430
fragaria_vesca	FvH4_1g28890 FvH4_1g28890 FvH4_1g28890 FvH4_1g28890
malus_domestica	MD09G1262800.v1.1 MD17G1257700.v1.1
prunus_persica	Prupe.3G160500_v2.0.a1 Prupe.3G160500_v2.0.a1
pyrus_communis	pycom09g17710 pycom17g25980
rosa_chinensis	RchiOBHm_Chr3g0493391
rosa_laevigata	RLG00000022716
rosa_multiflora	Rmu_sc0000828.1_g000020 Rmu_sc0010338.1_g000012
rosa_roxburghii	Rroxscaffold_6G00391620
rosa_rugosa	Rorug03G0260700
rosa_samantha	Rh3AG309800 Rh3CG343400 Rh3DG345000
rosa_wichuraiana	Rw3G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	277
Acc36I	ACCTGC	1 cut(s)	277
AciI	CCGC	2 cut(s)	99, 170
AclWI	GGATC	4 cut(s)	129, 431, 674, 803
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	3 cut(s)	371, 494, 732
AcuI	CTGAAG	1 cut(s)	894
AfaI	GTAC	1 cut(s)	842
AfiI	CCNNNNNNNGG	4 cut(s)	27, 199, 351, 690
AgsI	TTSAA	3 cut(s)	15, 536, 1144
AjnI	CCWGG	3 cut(s)	160, 195, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
AloI	GAACNNNNNNTCC	2 cut(s)	1124, 1156
AluBI	AGCT	8 cut(s)	284, 323, 542, 647, 659, 980, 1097, 1124
AluI	AGCT	8 cut(s)	284, 323, 542, 647, 659, 980, 1097, 1124
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	743
Alw44I	GTGCAC	1 cut(s)	444
AlwI	GGATC	4 cut(s)	129, 431, 674, 803
AlwNI	CAGNNNCTG	1 cut(s)	962
Ama87I	CYCGRG	2 cut(s)	144, 723
AoxI	GGCC	4 cut(s)	258, 294, 704, 878
ApaI	GGGCCC	2 cut(s)	298, 882
ApaLI	GTGCAC	1 cut(s)	444
ApeKI	GCWGC	4 cut(s)	284, 635, 638, 647
ApoI	RAATTY	3 cut(s)	371, 494, 732
AspS9I	GGNCC	5 cut(s)	172, 294, 295, 878, 879
AsuC2I	CCSGG	1 cut(s)	21
AvaI	CYCGRG	2 cut(s)	144, 723
AvaII	GGWCC	1 cut(s)	172
AxyI	CCTNAGG	1 cut(s)	689
BaeGI	GKGCMC	4 cut(s)	298, 448, 724, 882
BanII	GRGCYC	2 cut(s)	298, 882
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	4 cut(s)	271, 634, 647, 650
BccI	CCATC	3 cut(s)	476, 852, 878
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	3 cut(s)	162, 197, 441
BciVI	GTATCC	1 cut(s)	371
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	4 cut(s)	176, 516, 998, 1116
BfmI	CTRYAG	2 cut(s)	889, 1149
BfuAI	ACCTGC	1 cut(s)	277
BfuI	GTATCC	1 cut(s)	371
BisI	GCNGC	4 cut(s)	285, 636, 639, 648
BlsI	GCNGC	4 cut(s)	286, 637, 640, 649
Bme1390I	CCNGG	4 cut(s)	21, 162, 197, 441
Bme18I	GGWCC	1 cut(s)	172
BmeT110I	CYCGRG	2 cut(s)	144, 723
BmgT120I	GGNCC	5 cut(s)	172, 294, 295, 878, 879
BmiI	GGNNCC	4 cut(s)	295, 296, 297, 880
BmrFI	CCNGG	4 cut(s)	21, 162, 197, 441
BmsI	GCATC	6 cut(s)	157, 207, 417, 931, 958, 1033
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	145, 195
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 199, 351, 690
Bse21I	CCTNAGG	1 cut(s)	689
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	3 cut(s)	162, 197, 441
BseDI	CCNNGG	2 cut(s)	145, 195
BseGI	GGATG	4 cut(s)	432, 844, 973, 1138
BseLI	CCNNNNNNNGG	4 cut(s)	27, 199, 351, 690
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	3 cut(s)	100, 703, 1028
BseRI	GAGGAG	5 cut(s)	35, 48, 85, 490, 1107
BseSI	GKGCMC	4 cut(s)	298, 448, 724, 882
BseXI	GCAGC	4 cut(s)	271, 634, 647, 650
BseYI	CCCAGC	1 cut(s)	962
BshFI	GGCC	4 cut(s)	260, 296, 706, 880
BsiHKAI	GWGCWC	1 cut(s)	448
BsiHKCI	CYCGRG	2 cut(s)	144, 723
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	2 cut(s)	3, 218
BslI	CCNNNNNNNGG	4 cut(s)	27, 199, 351, 690
BsmAI	GTCTC	1 cut(s)	743
BsmFI	GGGAC	2 cut(s)	3, 218
BsnI	GGCC	4 cut(s)	260, 296, 706, 880
BsoBI	CYCGRG	2 cut(s)	144, 723
Bsp120I	GGGCCC	2 cut(s)	294, 878
Bsp1286I	GDGCHC	4 cut(s)	298, 448, 724, 882
Bsp143I	GATC	5 cut(s)	134, 436, 679, 808, 1006
BspACI	CCGC	2 cut(s)	99, 170
BspANI	GGCC	4 cut(s)	260, 296, 706, 880
BspCNI	CTCAG	3 cut(s)	99, 702, 1029
BspLI	GGNNCC	4 cut(s)	295, 296, 297, 880
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	4 cut(s)	129, 431, 674, 803
BsrDI	GCAATG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	145, 195
BssMI	GATC	5 cut(s)	134, 436, 679, 808, 1006
Bst2UI	CCWGG	3 cut(s)	162, 197, 441
Bst4CI	ACNGT	2 cut(s)	826, 1081
Bst6I	CTCTTC	4 cut(s)	55, 774, 913, 1084
BstAPI	GCANNNNNTGC	3 cut(s)	452, 647, 719
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	86, 689, 1037
BstF5I	GGATG	4 cut(s)	432, 844, 973, 1138
BstKTI	GATC	5 cut(s)	137, 439, 682, 811, 1009
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	5 cut(s)	134, 436, 679, 808, 1006
BstNI	CCWGG	3 cut(s)	162, 197, 441
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	4 cut(s)	19, 160, 195, 439
BstSFI	CTRYAG	2 cut(s)	889, 1149
BstSLI	GKGCMC	4 cut(s)	298, 448, 724, 882
BstV1I	GCAGC	4 cut(s)	271, 634, 647, 650
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
Bsu36I	CCTNAGG	1 cut(s)	689
BsuI	GTATCC	1 cut(s)	371
BsuRI	GGCC	4 cut(s)	260, 296, 706, 880
BtsCI	GGATG	4 cut(s)	432, 844, 973, 1138
BtsIMutI	CAGTG	2 cut(s)	870, 919
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	387
CaiI	CAGNNNCTG	1 cut(s)	962
Cfr13I	GGNCC	5 cut(s)	172, 294, 295, 878, 879
Csp6I	GTAC	1 cut(s)	841
CviAII	CATG	4 cut(s)	382, 499, 615, 1138
CviQI	GTAC	1 cut(s)	841
DdeI	CTNAG	3 cut(s)	86, 689, 1037
DpnI	GATC	5 cut(s)	136, 438, 681, 810, 1008
DpnII	GATC	5 cut(s)	134, 436, 679, 808, 1006
DraI	TTTAAA	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	4 cut(s)	55, 774, 913, 1084
EarI	CTCTTC	4 cut(s)	55, 774, 913, 1084
EciI	GGCGGA	1 cut(s)	88
Eco24I	GRGCYC	2 cut(s)	298, 882
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	894
Eco81I	CCTNAGG	1 cut(s)	689
Eco88I	CYCGRG	2 cut(s)	144, 723
EcoO109I	RGGNCCY	3 cut(s)	294, 295, 878
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	3 cut(s)	160, 195, 439
EcoT22I	ATGCAT	1 cut(s)	973
EcoT38I	GRGCYC	2 cut(s)	298, 882
FaeI	CATG	4 cut(s)	385, 502, 618, 1141
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	2 cut(s)	3, 218
FatI	CATG	4 cut(s)	381, 498, 614, 1137
FauNDI	CATATG	1 cut(s)	676
Fnu4HI	GCNGC	4 cut(s)	285, 636, 639, 648
FokI	GGATG	4 cut(s)	439, 831, 980, 1145
FriOI	GRGCYC	2 cut(s)	298, 882
Fsp4HI	GCNGC	4 cut(s)	285, 636, 639, 648
FspBI	CTAG	4 cut(s)	176, 516, 998, 1116
GluI	GCNGC	4 cut(s)	285, 636, 639, 648
GsaI	CCCAGC	1 cut(s)	966
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	4 cut(s)	260, 296, 706, 880
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	4 cut(s)	385, 502, 618, 1141
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	4 cut(s)	82, 188, 921, 1018
HpaII	CCGG	1 cut(s)	21
Hpy166II	GTNNAC	3 cut(s)	415, 446, 949
Hpy188I	TCNGA	2 cut(s)	89, 1023
Hpy188III	TCNNGA	2 cut(s)	536, 766
Hpy8I	GTNNAC	3 cut(s)	415, 446, 949
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	8 cut(s)	132, 349, 416, 562, 717, 722, 794, 869
HpyCH4III	ACNGT	2 cut(s)	826, 1081
HpyCH4IV	ACGT	2 cut(s)	470, 490
HpyF3I	CTNAG	3 cut(s)	86, 689, 1037
HpySE526I	ACGT	2 cut(s)	470, 490
Hsp92II	CATG	4 cut(s)	385, 502, 618, 1141
Kzo9I	GATC	5 cut(s)	134, 436, 679, 808, 1006
LmnI	GCTCC	1 cut(s)	1094
Lsp1109I	GCAGC	4 cut(s)	271, 634, 647, 650
LweI	GCATC	6 cut(s)	157, 207, 417, 931, 958, 1033
MaeI	CTAG	4 cut(s)	176, 516, 998, 1116
MaeII	ACGT	2 cut(s)	470, 490
MaeIII	GTNAC	3 cut(s)	466, 868, 1081
MalI	GATC	5 cut(s)	136, 438, 681, 810, 1008
MboI	GATC	5 cut(s)	134, 436, 679, 808, 1006
MboII	GAAGA	8 cut(s)	42, 99, 377, 788, 791, 818, 930, 1101
MflI	RGATCY	1 cut(s)	808
MhlI	GDGCHC	4 cut(s)	298, 448, 724, 882
MluCI	AATT	5 cut(s)	371, 494, 732, 836, 856
MlyI	GAGTC	2 cut(s)	76, 930
Mph1103I	ATGCAT	1 cut(s)	973
MseI	TTAA	4 cut(s)	276, 398, 560, 855
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	4 cut(s)	21, 162, 197, 441
MvaI	CCWGG	3 cut(s)	162, 197, 441
NciI	CCSGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	5 cut(s)	134, 436, 679, 808, 1006
NlaIII	CATG	4 cut(s)	385, 502, 618, 1141
NlaIV	GGNNCC	4 cut(s)	295, 296, 297, 880
NmuCI	GTSAC	2 cut(s)	868, 1081
NsiI	ATGCAT	1 cut(s)	973
NspI	RCATGY	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	188, 1018
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	286, 637, 640, 649
PleI	GAGTC	2 cut(s)	76, 929
PpsI	GAGTC	2 cut(s)	76, 929
Psp6I	CCWGG	3 cut(s)	160, 195, 439
PspFI	CCCAGC	1 cut(s)	962
PspGI	CCWGG	3 cut(s)	160, 195, 439
PspN4I	GGNNCC	4 cut(s)	295, 296, 297, 880
PspOMI	GGGCCC	2 cut(s)	294, 878
PspPI	GGNCC	5 cut(s)	172, 294, 295, 878, 879
PstNI	CAGNNNCTG	1 cut(s)	962
PsuI	RGATCY	1 cut(s)	808
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
SaqAI	TTAA	4 cut(s)	276, 398, 560, 855
SatI	GCNGC	4 cut(s)	285, 636, 639, 648
Sau3AI	GATC	5 cut(s)	134, 436, 679, 808, 1006
Sau96I	GGNCC	5 cut(s)	172, 294, 295, 878, 879
SchI	GAGTC	2 cut(s)	76, 930
ScrFI	CCNGG	4 cut(s)	21, 162, 197, 441
SduI	GDGCHC	4 cut(s)	298, 448, 724, 882
SfaNI	GCATC	6 cut(s)	157, 207, 417, 931, 958, 1033
SfcI	CTRYAG	2 cut(s)	889, 1149
SinI	GGWCC	1 cut(s)	172
Sse9I	AATT	5 cut(s)	371, 494, 732, 836, 856
SsiI	CCGC	2 cut(s)	99, 170
SspMI	CTAG	4 cut(s)	176, 516, 998, 1116
StyD4I	CCNGG	4 cut(s)	19, 160, 195, 439
TaaI	ACNGT	2 cut(s)	826, 1081
TaiI	ACGT	2 cut(s)	473, 493
TaqI	TCGA	2 cut(s)	32, 76
TasI	AATT	5 cut(s)	371, 494, 732, 836, 856
TfiI	GAWTC	2 cut(s)	188, 1018
Tru1I	TTAA	4 cut(s)	276, 398, 560, 855
Tru9I	TTAA	4 cut(s)	276, 398, 560, 855
TscAI	CASTG	2 cut(s)	877, 919
TseFI	GTSAC	2 cut(s)	868, 1081
TseI	GCWGC	4 cut(s)	284, 635, 638, 647
Tsp45I	GTSAC	2 cut(s)	868, 1081
TspDTI	ATGAA	5 cut(s)	243, 384, 435, 487, 834
TspGWI	ACGGA	2 cut(s)	94, 687
TspRI	CASTG	2 cut(s)	877, 919
VneI	GTGCAC	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	3 cut(s)	371, 494, 732
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	4 cut(s)	176, 516, 998, 1116
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.