Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010271

Physical Location & Seq

Genomic Coordinates Reverse (-)

18214054 .. 18218454

Gene Structure 4401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17710.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCAACAAAACAAAGGCTTAGGGCGACAACCATTACGCTACTACGCTCCTGCTTTGCCCTCTCCGCTGCTGCCATTTTCCATTCCACACAGAGCTTCAGAGCAAAATCGACTTTGGAAGATATCAACTGGTTCGAATTCTCTTCTGGGTCTGCGATTGTTTTGATGGCTCTTCATGCTACTGCTTTCTGCTTCGGCGGGGTGGTTTCTTTGCCTCGCAATTCGGTTTCTTTTAGTCAAAGGTCAGTCAGAGCTTCTGCATTTTCTTCCCCACCGCCTCTCAGTTCTTCCTCCATTGCTAGATTGAATGTCCAAGGAAAAGCATTTGCAGGAGATGCACTACCGGACACAAAAGAATCCTCCCTTGTGGTTTGTTTTGGGGAAATGCTGATTGATTTTGTCCCAACGAGTAATGGACTTTCATTGGCTGAAGCACCTGCATTTAAAAAAGCTGCTGGAGGAGCCCCTGCTAATGTTGCAGTTGGCATAGCTCGACTTGGTGGCTCATCAGCTTTTATTGGAAAGCTTGGGGAAGATGAATTTGGATACATGCTTGCTGATATACTAAAGGAGAATAATGTGAACAATGAAGGGATGCGTTTTGATCCCGGTGCTCGAACTGCTTTAGCATTTGTTACATTAAGGAGTGATGGGGAACGTGAGTTCATGTTTTATCGTAATCCTAGTGCTGATATGTTGCTTCAAGAAGCTGAACTTGATTTTGATTTAATTAGGAAGGCAAAAATATTGCATTATGGTTCTATAAGTCTTATCACGGAACCATGCAAGTCGGCTCATATTGCAGCGGCAAAAGCTGCAAAGGACGCTGGTGTAGTTCTGTCCTACGATCCCAACCTGAGGCTTCCACTGTGGCCTTCTGCAAAGAGTGCTAGAGAAGGAATTTTGAGTATATGGGACACTGCTGATGTTATCAAGATAAGTGAAGAAGAGATTTCTTTTCTAACGGGAGGAGAAGATCTGTATGATGAAAATGTTGTTCGCAAATTATACCATCCAAATCTTAAATTACTTTTGGTCACGGAGGCCCTGATGGTTGTAGGTACTACACCAAGGAGTTCAGTGGAAGAGTCAAGGGTAAGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0030054 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046835 GO:0055044 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

369

Amino Acids

39.74

Weight (kDa)

6.55

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66430
fragaria_vesca	FvH4_1g28890 FvH4_1g28890 FvH4_1g28890 FvH4_1g28890
malus_domestica	MD09G1262800.v1.1 MD17G1257700.v1.1
prunus_persica	Prupe.3G160500_v2.0.a1 Prupe.3G160500_v2.0.a1
pyrus_communis	pycom09g17710 pycom17g25980
rosa_chinensis	RchiOBHm_Chr3g0493391
rosa_laevigata	RLG00000022716
rosa_multiflora	Rmu_sc0000828.1_g000020 Rmu_sc0010338.1_g000012
rosa_roxburghii	Rroxscaffold_6G00391620
rosa_rugosa	Rorug03G0260700
rosa_samantha	Rh3AG309800 Rh3CG343400 Rh3DG345000
rosa_wichuraiana	Rw3G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	445
AciI	CCGC	4 cut(s)	66, 198, 275, 806
AclWI	GGATC	2 cut(s)	599, 842
AcsI	RAATTY	3 cut(s)	137, 539, 900
AcuI	CTGAAG	2 cut(s)	82, 450
AfaI	GTAC	1 cut(s)	1063
AfiI	CCNNNNNNNGG	1 cut(s)	858
AgsI	TTSAA	2 cut(s)	307, 704
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AloI	GAACNNNNNNTCC	2 cut(s)	647, 679
AluBI	AGCT	8 cut(s)	96, 254, 452, 491, 512, 526, 710, 815
AluI	AGCT	8 cut(s)	96, 254, 452, 491, 512, 526, 710, 815
Alw21I	GWGCWC	1 cut(s)	616
AlwI	GGATC	2 cut(s)	599, 842
AoxI	GGCC	2 cut(s)	872, 1044
ApeKI	GCWGC	5 cut(s)	68, 71, 452, 803, 815
ApoI	RAATTY	3 cut(s)	137, 539, 900
AspS9I	GGNCC	1 cut(s)	1045
AsuC2I	CCSGG	1 cut(s)	609
AsuII	TTCGAA	1 cut(s)	135
AxyI	CCTNAGG	1 cut(s)	857
BanII	GRGCYC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	5 cut(s)	55, 58, 439, 802, 815
BccI	CCATC	4 cut(s)	160, 644, 1020, 1045
BciVI	GTATCC	1 cut(s)	539
BcnI	CCSGG	1 cut(s)	609
BfaI	CTAG	3 cut(s)	300, 684, 891
BfuAI	ACCTGC	1 cut(s)	445
BfuI	GTATCC	1 cut(s)	539
BglII	AGATCT	1 cut(s)	976
BisI	GCNGC	6 cut(s)	69, 72, 453, 804, 807, 816
BlsI	GCNGC	6 cut(s)	70, 73, 454, 805, 808, 817
Bme1390I	CCNGG	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	1045
BmiI	GGNNCC	2 cut(s)	463, 780
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	2 cut(s)	325, 585
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	20
Bpu14I	TTCGAA	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	313, 1070
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	858
Bse1I	ACTGG	1 cut(s)	134
Bse21I	CCTNAGG	1 cut(s)	857
Bse3DI	GCAATG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	313, 1070
BseGI	GGATG	2 cut(s)	600, 1012
BseLI	CCNNNNNNNGG	1 cut(s)	858
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	295, 848
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	474, 984
BseXI	GCAGC	5 cut(s)	55, 58, 439, 802, 815
BshFI	GGCC	2 cut(s)	874, 1046
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	2 cut(s)	344, 609
BslFI	GGGAC	2 cut(s)	386, 929
BslI	CCNNNNNNNGG	1 cut(s)	858
BsmFI	GGGAC	2 cut(s)	386, 929
BsnI	GGCC	2 cut(s)	874, 1046
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	466, 616
Bsp143I	GATC	3 cut(s)	604, 847, 976
BspACI	CCGC	4 cut(s)	66, 198, 275, 806
BspANI	GGCC	2 cut(s)	874, 1046
BspCNI	CTCAG	2 cut(s)	294, 849
BspLI	GGNNCC	2 cut(s)	463, 780
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	2 cut(s)	599, 842
BspQI	GCTCTTC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	313, 1070
BssMI	GATC	3 cut(s)	604, 847, 976
BssT1I	CCWWGG	2 cut(s)	313, 1070
Bst4CI	ACNGT	1 cut(s)	870
Bst6I	CTCTTC	4 cut(s)	148, 177, 942, 1080
BstAPI	GCANNNNNTGC	3 cut(s)	335, 815, 887
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	20, 281, 857
BstF5I	GGATG	2 cut(s)	600, 1012
BstKTI	GATC	3 cut(s)	607, 850, 979
BstMBI	GATC	3 cut(s)	604, 847, 976
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	607
BstV1I	GCAGC	5 cut(s)	55, 58, 439, 802, 815
BstX2I	RGATCY	1 cut(s)	976
BstYI	RGATCY	1 cut(s)	976
Bsu36I	CCTNAGG	1 cut(s)	857
BsuI	GTATCC	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	874, 1046
BtsCI	GGATG	2 cut(s)	600, 1012
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	3 cut(s)	866, 918, 1086
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	555
Cfr13I	GGNCC	1 cut(s)	1045
CseI	GACGC	1 cut(s)	833
Csp6I	GTAC	1 cut(s)	1062
CviAII	CATG	4 cut(s)	176, 550, 667, 783
CviQI	GTAC	1 cut(s)	1062
DdeI	CTNAG	3 cut(s)	20, 281, 857
DpnI	GATC	3 cut(s)	606, 849, 978
DpnII	GATC	3 cut(s)	604, 847, 976
DraI	TTTAAA	1 cut(s)	445
Eam1104I	CTCTTC	4 cut(s)	148, 177, 942, 1080
EarI	CTCTTC	4 cut(s)	148, 177, 942, 1080
Eco130I	CCWWGG	2 cut(s)	313, 1070
Eco24I	GRGCYC	1 cut(s)	466
Eco32I	GATATC	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	82, 450
Eco81I	CCTNAGG	1 cut(s)	857
EcoO109I	RGGNCCY	1 cut(s)	1045
EcoRI	GAATTC	1 cut(s)	137
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	313, 1070
EcoT38I	GRGCYC	1 cut(s)	466
ErhI	CCWWGG	2 cut(s)	313, 1070
FaeI	CATG	4 cut(s)	179, 553, 670, 786
FalI	AAGNNNNNCTT	2 cut(s)	699, 731
FaqI	GGGAC	2 cut(s)	386, 929
FatI	CATG	4 cut(s)	175, 549, 666, 782
FauI	CCCGC	1 cut(s)	191
Fnu4HI	GCNGC	6 cut(s)	69, 72, 453, 804, 807, 816
FokI	GGATG	2 cut(s)	607, 999
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	6 cut(s)	69, 72, 453, 804, 807, 816
FspBI	CTAG	3 cut(s)	300, 684, 891
GluI	GCNGC	6 cut(s)	69, 72, 453, 804, 807, 816
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	874, 1046
HapII	CCGG	2 cut(s)	344, 609
HgaI	GACGC	1 cut(s)	833
Hin1II	CATG	4 cut(s)	179, 553, 670, 786
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	2 cut(s)	356, 1088
HpaII	CCGG	2 cut(s)	344, 609
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	2 cut(s)	101, 251
Hpy188III	TCNNGA	2 cut(s)	704, 934
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	5 cut(s)	584, 730, 885, 890, 1095
HpyCH4III	ACNGT	1 cut(s)	870
HpyCH4IV	ACGT	1 cut(s)	658
HpyF3I	CTNAG	3 cut(s)	20, 281, 857
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	4 cut(s)	179, 553, 670, 786
Kzo9I	GATC	3 cut(s)	604, 847, 976
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	53, 461
Lsp1109I	GCAGC	5 cut(s)	55, 58, 439, 802, 815
LweI	GCATC	2 cut(s)	325, 585
MaeI	CTAG	3 cut(s)	300, 684, 891
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	2 cut(s)	634, 1036
MalI	GATC	3 cut(s)	606, 849, 978
MboI	GATC	3 cut(s)	604, 847, 976
MflI	RGATCY	1 cut(s)	976
MhlI	GDGCHC	2 cut(s)	466, 616
MluCI	AATT	7 cut(s)	137, 220, 539, 729, 900, 1004, 1025
MlyI	GAGTC	1 cut(s)	1097
MnlI	CCTC	9 cut(s)	71, 225, 288, 301, 370, 452, 852, 962, 1036
MseI	TTAA	4 cut(s)	444, 641, 728, 1023
MspA1I	CMGCKG	2 cut(s)	68, 806
MspI	CCGG	2 cut(s)	344, 609
MspR9I	CCNGG	1 cut(s)	609
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	3 cut(s)	604, 847, 976
NlaIII	CATG	4 cut(s)	179, 553, 670, 786
NlaIV	GGNNCC	2 cut(s)	463, 780
NmuCI	GTSAC	1 cut(s)	1036
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	1 cut(s)	135
PaqCI	CACCTGC	1 cut(s)	445
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	6 cut(s)	70, 73, 454, 805, 808, 817
PleI	GAGTC	1 cut(s)	1096
PpsI	GAGTC	1 cut(s)	1096
PspN4I	GGNNCC	2 cut(s)	463, 780
PspPI	GGNCC	1 cut(s)	1045
PsuI	RGATCY	1 cut(s)	976
RsaI	GTAC	1 cut(s)	1063
RsaNI	GTAC	1 cut(s)	1062
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	4 cut(s)	444, 641, 728, 1023
SatI	GCNGC	6 cut(s)	69, 72, 453, 804, 807, 816
Sau3AI	GATC	3 cut(s)	604, 847, 976
Sau96I	GGNCC	1 cut(s)	1045
SchI	GAGTC	1 cut(s)	1097
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	2 cut(s)	466, 616
SfaNI	GCATC	2 cut(s)	325, 585
SfuI	TTCGAA	1 cut(s)	135
Sse9I	AATT	7 cut(s)	137, 220, 539, 729, 900, 1004, 1025
SsiI	CCGC	4 cut(s)	66, 198, 275, 806
SspI	AATATT	1 cut(s)	747
SspMI	CTAG	3 cut(s)	300, 684, 891
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	2 cut(s)	313, 1070
TaaI	ACNGT	1 cut(s)	870
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	4 cut(s)	110, 135, 493, 616
TasI	AATT	7 cut(s)	137, 220, 539, 729, 900, 1004, 1025
TauI	GCSGC	1 cut(s)	809
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	4 cut(s)	444, 641, 728, 1023
Tru9I	TTAA	4 cut(s)	444, 641, 728, 1023
TscAI	CASTG	3 cut(s)	873, 925, 1086
TseFI	GTSAC	1 cut(s)	1036
TseI	GCWGC	5 cut(s)	68, 71, 452, 803, 815
Tsp45I	GTSAC	1 cut(s)	1036
TspDTI	ATGAA	6 cut(s)	164, 411, 552, 603, 655, 1002
TspGWI	ACGGA	2 cut(s)	791, 1055
TspRI	CASTG	3 cut(s)	873, 925, 1086
XapI	RAATTY	3 cut(s)	137, 539, 900
XceI	RCATGY	1 cut(s)	553
XspI	CTAG	3 cut(s)	300, 684, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.