Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000828.1

Orthogroup ID

OG0010271

Physical Location & Seq

Genomic Coordinates Forward (+)

84849 .. 89996

Gene Structure 5148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000828.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atggctgtttattcaagtcccgctctttggtcgagtgcttctctcctctcttcgcctcctcctcgcctatgtttcactcgacggactctcagaccctcctccgccttttcttctgcacctctcccttccattgcccgaggaaaagcatttccaggtgatgcggtcctagacacgaaagaatccccccttgtggtttgtttcggggagatgctaattgatttcgtcccaaccaccaatggactttcattggccgaagcacctgcatttaaaaaagctgctggaggagcccctgctaatgttgcagttggcatagctcgtcttggtggctcatcagcctttattgggaaggtgggcgaagatgaatttggatacatgcttgctgatatattaaaggagaataatgtcaacaatgaagggatgcgttttgatcctggtgcacgaactgctttagcatttgttacgttgaggagtgatggggaacgtgagttcatgttttatcgtaatcctagtgctgatatgttgcttcaagaagctgaacttgattttgatttaataaggaaggcaaaaatcttgcactatggttctataagtcttattacagaaccatgcaaatccgcccatattgcagcagcaaaagctgcaaaggaagctggtgttgttttatcatatgatcccaacctcaggcttccgttgtggccttctgcaaagagtgcccgagaaggaattttgagtatatgggagactgctgatattattaaggtaagtgaagaagagatttcttttctaacagaaggagaagatccatttgatgaaactgtcgttcgcaaattgtaccatccaaatcttaatttactacttgtcactgaaggccccgatggttgtagatactacaccaaggagttcagtggaagagtcaagggtatgaaggtagatgccgtggacacaacgggtgctggggatgcatttgtagctggaatactatctcaactagcagttgatctctctttgattcagaatgaggacaaactgagagatgcacttctgtttgctaatgcttgtggtgctttgactgtgacgggaagaggagctattccggctttgccaactagagaagctgtgctggatgtcatgttcaagtctgtatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008865 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016051 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0019752 GO:0030054 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046835 GO:0055044 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

382

Amino Acids

40.94

Weight (kDa)

5.18

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66430
fragaria_vesca	FvH4_1g28890 FvH4_1g28890 FvH4_1g28890 FvH4_1g28890
malus_domestica	MD09G1262800.v1.1 MD17G1257700.v1.1
prunus_persica	Prupe.3G160500_v2.0.a1 Prupe.3G160500_v2.0.a1
pyrus_communis	pycom09g17710 pycom17g25980
rosa_chinensis	RchiOBHm_Chr3g0493391
rosa_laevigata	RLG00000022716
rosa_multiflora	Rmu_sc0000828.1_g000020 Rmu_sc0010338.1_g000012
rosa_roxburghii	Rroxscaffold_6G00391620
rosa_rugosa	Rorug03G0260700
rosa_samantha	Rh3AG309800 Rh3CG343400 Rh3DG345000
rosa_wichuraiana	Rw3G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	268
Acc36I	ACCTGC	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	23
AciI	CCGC	4 cut(s)	21, 102, 161, 615
AclWI	GGATC	3 cut(s)	422, 665, 794
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	362, 723
AcuI	CTGAAG	1 cut(s)	885
AfaI	GTAC	1 cut(s)	833
AfiI	CCNNNNNNNGG	4 cut(s)	27, 190, 342, 681
AgsI	TTSAA	3 cut(s)	15, 527, 1135
AjnI	CCWGG	2 cut(s)	151, 430
AjuI	GAANNNNNNNTTGG	2 cut(s)	348, 380
AloI	GAACNNNNNNTCC	4 cut(s)	470, 502, 1115, 1147
AluBI	AGCT	8 cut(s)	275, 314, 533, 638, 650, 971, 1088, 1115
AluI	AGCT	8 cut(s)	275, 314, 533, 638, 650, 971, 1088, 1115
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	1 cut(s)	734
Alw44I	GTGCAC	1 cut(s)	435
AlwI	GGATC	3 cut(s)	422, 665, 794
Ama87I	CYCGRG	2 cut(s)	135, 714
AoxI	GGCC	3 cut(s)	249, 695, 868
ApaLI	GTGCAC	1 cut(s)	435
ApeKI	GCWGC	4 cut(s)	275, 626, 629, 638
ApoI	RAATTY	2 cut(s)	362, 723
AspS9I	GGNCC	2 cut(s)	163, 869
AsuHPI	GGTGA	1 cut(s)	167
AvaI	CYCGRG	2 cut(s)	135, 714
AvaII	GGWCC	1 cut(s)	163
AxyI	CCTNAGG	1 cut(s)	680
BaeGI	GKGCMC	2 cut(s)	439, 715
BanII	GRGCYC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	4 cut(s)	262, 625, 638, 641
BccI	CCATC	3 cut(s)	467, 843, 869
BceAI	ACGGC	1 cut(s)	920
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	2 cut(s)	153, 432
BciVI	GTATCC	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	4 cut(s)	167, 507, 989, 1107
BfuAI	ACCTGC	1 cut(s)	268
BfuI	GTATCC	1 cut(s)	362
BisI	GCNGC	4 cut(s)	276, 627, 630, 639
BlsI	GCNGC	4 cut(s)	277, 628, 631, 640
Bme1390I	CCNGG	2 cut(s)	153, 432
Bme18I	GGWCC	1 cut(s)	163
BmeT110I	CYCGRG	2 cut(s)	135, 714
BmgT120I	GGNCC	2 cut(s)	163, 869
BmiI	GGNNCC	2 cut(s)	286, 871
BmrFI	CCNGG	2 cut(s)	153, 432
BmsI	GCATC	6 cut(s)	148, 198, 408, 922, 949, 1024
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	136, 894, 936
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 190, 342, 681
Bse21I	CCTNAGG	1 cut(s)	680
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	153, 432
BseDI	CCNNGG	3 cut(s)	136, 894, 936
BseGI	GGATG	4 cut(s)	423, 835, 964, 1129
BseLI	CCNNNNNNNGG	4 cut(s)	27, 190, 342, 681
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	3 cut(s)	103, 694, 1019
BseRI	GAGGAG	7 cut(s)	35, 48, 51, 88, 297, 481, 1098
BseSI	GKGCMC	2 cut(s)	439, 715
BseXI	GCAGC	4 cut(s)	262, 625, 638, 641
BseYI	CCCAGC	1 cut(s)	953
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	251, 697, 870
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	2 cut(s)	135, 714
BsiSI	CCGG	1 cut(s)	1094
BslFI	GGGAC	2 cut(s)	3, 209
BslI	CCNNNNNNNGG	4 cut(s)	27, 190, 342, 681
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	2 cut(s)	3, 209
BsnI	GGCC	3 cut(s)	251, 697, 870
BsoBI	CYCGRG	2 cut(s)	135, 714
Bsp1286I	GDGCHC	3 cut(s)	289, 439, 715
Bsp143I	GATC	4 cut(s)	427, 670, 799, 997
BspACI	CCGC	4 cut(s)	21, 102, 161, 615
BspANI	GGCC	3 cut(s)	251, 697, 870
BspCNI	CTCAG	3 cut(s)	102, 693, 1020
BspLI	GGNNCC	2 cut(s)	286, 871
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	3 cut(s)	422, 665, 794
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	129
BssECI	CCNNGG	3 cut(s)	136, 894, 936
BssMI	GATC	4 cut(s)	427, 670, 799, 997
BssT1I	CCWWGG	1 cut(s)	894
Bst2UI	CCWGG	2 cut(s)	153, 432
Bst4CI	ACNGT	2 cut(s)	817, 1072
Bst6I	CTCTTC	4 cut(s)	55, 765, 904, 1075
BstAPI	GCANNNNNTGC	3 cut(s)	443, 638, 710
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	4 cut(s)	89, 680, 1028, 1146
BstDSI	CCRYGG	1 cut(s)	936
BstF5I	GGATG	4 cut(s)	423, 835, 964, 1129
BstKTI	GATC	4 cut(s)	430, 673, 802, 1000
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	4 cut(s)	427, 670, 799, 997
BstNI	CCWGG	2 cut(s)	153, 432
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	151, 430
BstSLI	GKGCMC	2 cut(s)	439, 715
BstV1I	GCAGC	4 cut(s)	262, 625, 638, 641
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
Bsu36I	CCTNAGG	1 cut(s)	680
BsuI	GTATCC	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	251, 697, 870
BtgI	CCRYGG	1 cut(s)	936
BtsCI	GGATG	4 cut(s)	423, 835, 964, 1129
BtsIMutI	CAGTG	2 cut(s)	861, 910
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	378
Cfr13I	GGNCC	2 cut(s)	163, 869
Csp6I	GTAC	1 cut(s)	832
CviAII	CATG	4 cut(s)	373, 490, 606, 1129
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	4 cut(s)	89, 680, 1028, 1146
DpnI	GATC	4 cut(s)	429, 672, 801, 999
DpnII	GATC	4 cut(s)	427, 670, 799, 997
DraI	TTTAAA	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	4 cut(s)	55, 765, 904, 1075
EarI	CTCTTC	4 cut(s)	55, 765, 904, 1075
EciI	GGCGGA	2 cut(s)	91, 604
Eco130I	CCWWGG	1 cut(s)	894
Eco24I	GRGCYC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	885
Eco81I	CCTNAGG	1 cut(s)	680
Eco88I	CYCGRG	2 cut(s)	135, 714
EcoO109I	RGGNCCY	1 cut(s)	869
EcoRII	CCWGG	2 cut(s)	151, 430
EcoT14I	CCWWGG	1 cut(s)	894
EcoT22I	ATGCAT	1 cut(s)	964
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	894
FaeI	CATG	4 cut(s)	376, 493, 609, 1132
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FaqI	GGGAC	2 cut(s)	3, 209
FatI	CATG	4 cut(s)	372, 489, 605, 1128
FauI	CCCGC	1 cut(s)	28
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	4 cut(s)	276, 627, 630, 639
FokI	GGATG	4 cut(s)	430, 822, 971, 1136
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	4 cut(s)	276, 627, 630, 639
FspBI	CTAG	4 cut(s)	167, 507, 989, 1107
GluI	GCNGC	4 cut(s)	276, 627, 630, 639
GsaI	CCCAGC	1 cut(s)	957
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	251, 697, 870
HapII	CCGG	1 cut(s)	1094
Hin1II	CATG	4 cut(s)	376, 493, 609, 1132
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	4 cut(s)	85, 179, 912, 1009
HpaII	CCGG	1 cut(s)	1094
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	406, 437, 940
Hpy188I	TCNGA	2 cut(s)	92, 1014
Hpy188III	TCNNGA	1 cut(s)	527
Hpy8I	GTNNAC	3 cut(s)	406, 437, 940
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	9 cut(s)	135, 340, 407, 553, 708, 713, 785, 860, 919
HpyCH4III	ACNGT	2 cut(s)	817, 1072
HpyCH4IV	ACGT	2 cut(s)	461, 481
HpyF3I	CTNAG	4 cut(s)	89, 680, 1028, 1146
HpySE526I	ACGT	2 cut(s)	461, 481
Hsp92II	CATG	4 cut(s)	376, 493, 609, 1132
Kzo9I	GATC	4 cut(s)	427, 670, 799, 997
LmnI	GCTCC	2 cut(s)	284, 1085
Lsp1109I	GCAGC	4 cut(s)	262, 625, 638, 641
LweI	GCATC	6 cut(s)	148, 198, 408, 922, 949, 1024
MaeI	CTAG	4 cut(s)	167, 507, 989, 1107
MaeII	ACGT	2 cut(s)	461, 481
MaeIII	GTNAC	3 cut(s)	457, 859, 1072
MalI	GATC	4 cut(s)	429, 672, 801, 999
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	4 cut(s)	427, 670, 799, 997
MboII	GAAGA	8 cut(s)	42, 102, 368, 779, 782, 809, 921, 1092
MflI	RGATCY	1 cut(s)	799
MhlI	GDGCHC	3 cut(s)	289, 439, 715
MluCI	AATT	5 cut(s)	213, 362, 723, 827, 847
MlyI	GAGTC	2 cut(s)	79, 921
Mph1103I	ATGCAT	1 cut(s)	964
MseI	TTAA	5 cut(s)	267, 389, 551, 756, 846
MspI	CCGG	1 cut(s)	1094
MspR9I	CCNGG	2 cut(s)	153, 432
MvaI	CCWGG	2 cut(s)	153, 432
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	4 cut(s)	427, 670, 799, 997
NlaIII	CATG	4 cut(s)	376, 493, 609, 1132
NlaIV	GGNNCC	2 cut(s)	286, 871
NmuCI	GTSAC	2 cut(s)	859, 1072
NsiI	ATGCAT	1 cut(s)	964
NspI	RCATGY	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	179, 1009
PkrI	GCNGC	4 cut(s)	277, 628, 631, 640
PleI	GAGTC	2 cut(s)	79, 920
PpsI	GAGTC	2 cut(s)	79, 920
Psp6I	CCWGG	2 cut(s)	151, 430
PspFI	CCCAGC	1 cut(s)	953
PspGI	CCWGG	2 cut(s)	151, 430
PspN4I	GGNNCC	2 cut(s)	286, 871
PspPI	GGNCC	2 cut(s)	163, 869
PsuI	RGATCY	1 cut(s)	799
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
SaqAI	TTAA	5 cut(s)	267, 389, 551, 756, 846
SatI	GCNGC	4 cut(s)	276, 627, 630, 639
Sau3AI	GATC	4 cut(s)	427, 670, 799, 997
Sau96I	GGNCC	2 cut(s)	163, 869
SchI	GAGTC	2 cut(s)	79, 921
ScrFI	CCNGG	2 cut(s)	153, 432
SduI	GDGCHC	3 cut(s)	289, 439, 715
SfaNI	GCATC	6 cut(s)	148, 198, 408, 922, 949, 1024
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	5 cut(s)	213, 362, 723, 827, 847
SsiI	CCGC	4 cut(s)	21, 102, 161, 615
SspMI	CTAG	4 cut(s)	167, 507, 989, 1107
StyD4I	CCNGG	2 cut(s)	151, 430
StyI	CCWWGG	1 cut(s)	894
TaaI	ACNGT	2 cut(s)	817, 1072
TaiI	ACGT	2 cut(s)	464, 484
TaqI	TCGA	2 cut(s)	32, 79
TasI	AATT	5 cut(s)	213, 362, 723, 827, 847
TfiI	GAWTC	2 cut(s)	179, 1009
Tru1I	TTAA	5 cut(s)	267, 389, 551, 756, 846
Tru9I	TTAA	5 cut(s)	267, 389, 551, 756, 846
TscAI	CASTG	2 cut(s)	868, 910
TseFI	GTSAC	2 cut(s)	859, 1072
TseI	GCWGC	4 cut(s)	275, 626, 629, 638
Tsp45I	GTSAC	2 cut(s)	859, 1072
TspDTI	ATGAA	6 cut(s)	234, 375, 426, 478, 825, 938
TspGWI	ACGGA	2 cut(s)	97, 678
TspRI	CASTG	2 cut(s)	868, 910
VneI	GTGCAC	1 cut(s)	435
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	362, 723
XceI	RCATGY	1 cut(s)	376
XspI	CTAG	4 cut(s)	167, 507, 989, 1107
Zsp2I	ATGCAT	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.