Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004787

Physical Location & Seq

Genomic Coordinates Forward (+)

22313363 .. 22317369

Gene Structure 4007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G223000.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGGAGGTTCATTGTGATCTTGAAGTTGATGTCAATGGGGAAGAGTCTTTCATGGTGGACAAGAAAATTATTGCTTCCTACTCTGGCAAATTGAGAAAATTACTTGGCAAATCAAAATCTACCTCAAGAAATCTTAAAGTGGTATTGCATGACTTTCCGGGAGGAGCAGAGAGTTTTGAGCTCATTTCAAGGTTCTGCTACAACCATGGCAGCACCGACATAACTCCTTCCAATATTTCCCTCCTATATTGTGCTGCACAGTTCATGGAAATGAACAATTCTGTCATTGGAACACATAATTTATTGGAAAAAGCAGAGAAGTCATTTGAAGAGATCAGATATTGGACATGGTCTGAGCTTTTAATGGCTTTGAAGCATTGCCAAGATTTACTTCCAGCCGCTAATTCTCTGAGCCTACTCGAGAAATGCATGGATACCCTTGTAGCAAGATTGCCTTCGACAAGCGAAGCGAGTCCTTGTCCTTCCACTTCATCCCCAGATAGCTCTGGTATTCGGTTTTCATGCGACACTCGAAGCTCTGAGAGTTTGAAAACCAGCTCATCTCGGGCAACCTGGTGGTTTGAGGATCTTCTAGCTTTAGGTCCAAATTTGGTTGAAATGCTGGTCAAGTCCATGATTTCTCGAAAGCTTGATCATGTTATCATTAGTAGGTTCCTCTTTTATTACCAGAAATCGAAGTTTTACACTGTCAAATCTGATGCCAAGTGCACCTTTGTGGAAACAGTCATTGATATGCTGTATATTCTTGATCAGAGCTGTGTTTCTTGCAAGAGTTTATTTGGGATTCTTCGAGTTGCTCTGAATTTGAACATAAACAAAAGTAGCAGGAATAAGTTGGAGAGCATGATTGGTTCACAGCTTGATCAAGCAATATTAGACAATTTGCTTGTTCCATCCCCACGGGGGATCAATTACTTGTATGATGTCAATCTTGTTCTAAGGTTATTGAAATCATTTCTGAGTGGAGGAATCTGTCAAGCATCGCCCATGCGATTGAGGAGAGTTGCTGCCTTGGTGGATTTGTATATGGCAGAAGTAGCCCCAGATCCTTGTTTGAAGCCTTCGAAGTTTGTGGCTTTAGCCATGGTCATGCCGGATTCTGCCAGAGACTCCTATGATGAACTTTACCATGCCATGGACATGTATATAGAGGTGCATGCAGGATTGTCAGAAGAGGAAAAGATGAAAATTTGTTGTGTGTTGAACTATGAGAAGCTCTCATCAGAGACTTGCATACACCTTTCTCAGAATAAAAAGTTTCCATCAAAAGCAGCAGTCCAAGCTCTCGTCTCTCAGCAATTGAAGCTTAAAAGCTTACTCCATGCAACCAACAATTCTAAGTCCTACGCTGACTCCCCTTGTAGTGCCGGCGAGGTTGGAAATTGGGGAAGGAAATTCGACGCCAATGAACAACTTGTGCTTTATGCCGGGAAACTCAATCTCGCAGCTGACAATGAGAAACTTAGAGCACATTTGCAAGGCATGCAGTGCCGGGTAATGGAATTGGAGAAACTGTGCAAGAAAATGCAAACTCAAATGGCAAAGTTTACAAAATCAAGAGCATCAAGCCACAGTCATACAAGATCTGTGCCCAAACTCTGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

543

Amino Acids

60.69

Weight (kDa)

8.47

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22104 AT3G22104 AT3G22104 AT3G22104
fragaria_vesca	FvH4_6g43790 FvH4_6g43790 FvH4_6g43790 FvH4_6g43790
malus_domestica	MD09G1102800.v1.1 MD17G1090600.v1.1
prunus_persica	Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1
pyrus_communis	pycom09g02610 pycom17g08750
rosa_chinensis	RchiOBHm_Chr2g0160551
rosa_laevigata	RLG00000021221
rosa_multiflora	Rmu_sc0000674.1_g000007
rosa_roxburghii	Rroxscaffold_2G00089730
rosa_rugosa	Rorug02G0483700 Rorug02G0483700 Rorug02G0483700
rosa_samantha	Rh2AG549000 Rh2BG562700 Rh2CG533300 Rh2DG572000
rosa_wichuraiana	Rw2G045450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1156
AciI	CCGC	1 cut(s)	399
AclWI	GGATC	3 cut(s)	594, 935, 1061
AcsI	RAATTY	4 cut(s)	607, 823, 1209, 1415
AcyI	GRCGYC	1 cut(s)	1422
AfiI	CCNNNNNNNGG	3 cut(s)	924, 1156, 1519
AflIII	ACRYGT	1 cut(s)	1161
AjnI	CCWGG	1 cut(s)	572
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AleI	CACNNNNGTG	1 cut(s)	734
Alw21I	GWGCWC	3 cut(s)	183, 731, 1492
Alw26I	GTCTC	3 cut(s)	1122, 1241, 1315
Alw44I	GTGCAC	1 cut(s)	727
AlwI	GGATC	3 cut(s)	594, 935, 1061
Ama87I	CYCGRG	2 cut(s)	419, 564
ApaLI	GTGCAC	1 cut(s)	727
ApeKI	GCWGC	5 cut(s)	210, 254, 1028, 1292, 1466
ApoI	RAATTY	4 cut(s)	607, 823, 1209, 1415
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	3 cut(s)	159, 1450, 1514
AsuII	TTCGAA	1 cut(s)	1085
AvaI	CYCGRG	2 cut(s)	419, 564
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	2 cut(s)	731, 1614
BaeI	ACNNNNGTAYC	2 cut(s)	426, 459
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	3 cut(s)	183, 731, 1492
BbvI	GCAGC	5 cut(s)	222, 241, 1015, 1304, 1478
BccI	CCATC	2 cut(s)	922, 1291
BciT130I	CCWGG	1 cut(s)	574
BciVI	GTATCC	1 cut(s)	427
BclI	TGATCA	3 cut(s)	652, 769, 883
BcnI	CCSGG	3 cut(s)	159, 1450, 1514
BcoDI	GTCTC	3 cut(s)	1122, 1241, 1315
BfaI	CTAG	1 cut(s)	593
BfuI	GTATCC	1 cut(s)	427
BglII	AGATCT	1 cut(s)	1604
BisI	GCNGC	6 cut(s)	211, 255, 399, 1029, 1293, 1467
BlsI	GCNGC	6 cut(s)	212, 256, 400, 1030, 1294, 1468
Bme1390I	CCNGG	4 cut(s)	159, 574, 1450, 1514
Bme18I	GGWCC	1 cut(s)	602
BmeT110I	CYCGRG	2 cut(s)	419, 564
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	674
BmrFI	CCNGG	4 cut(s)	159, 574, 1450, 1514
BmsI	GCATC	3 cut(s)	709, 1010, 1592
BplI	GAGNNNNNCTC	2 cut(s)	1223, 1255
Bpu14I	TTCGAA	1 cut(s)	1085
BpuEI	CTTGAG	1 cut(s)	109
BpuMI	CCSGG	3 cut(s)	159, 1450, 1514
BsaBI	GATNNNNATC	1 cut(s)	948
BsaHI	GRCGYC	1 cut(s)	1422
BsaJI	CCNNGG	5 cut(s)	205, 920, 1032, 1104, 1155
BsaXI	ACNNNNNCTCC	4 cut(s)	1358, 1388, 1520, 1550
Bsc4I	CCNNNNNNNGG	3 cut(s)	924, 1156, 1519
Bse118I	RCCGGY	1 cut(s)	1388
Bse3DI	GCAATG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	574
BseDI	CCNNGG	5 cut(s)	205, 920, 1032, 1104, 1155
BseGI	GGATG	2 cut(s)	491, 914
BseJI	GATNNNNATC	1 cut(s)	948
BseLI	CCNNNNNNNGG	3 cut(s)	924, 1156, 1519
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	6 cut(s)	345, 401, 531, 971, 1280, 1328
BseRI	GAGGAG	2 cut(s)	177, 1033
BseSI	GKGCMC	2 cut(s)	731, 1614
BseXI	GCAGC	5 cut(s)	222, 241, 1015, 1304, 1478
BsgI	GTGCAG	1 cut(s)	240
BsiHKAI	GWGCWC	3 cut(s)	183, 731, 1492
BsiHKCI	CYCGRG	2 cut(s)	419, 564
BsiSI	CCGG	5 cut(s)	158, 1115, 1389, 1449, 1513
BslI	CCNNNNNNNGG	3 cut(s)	924, 1156, 1519
BsmAI	GTCTC	3 cut(s)	1122, 1241, 1315
BsmBI	CGTCTC	1 cut(s)	1315
BsoBI	CYCGRG	2 cut(s)	419, 564
Bsp119I	TTCGAA	1 cut(s)	1085
Bsp1286I	GDGCHC	4 cut(s)	183, 731, 1492, 1614
Bsp143I	GATC	9 cut(s)	16, 333, 586, 652, 769, 883, 927, 1066, 1604
Bsp19I	CCATGG	3 cut(s)	205, 1104, 1155
BspACI	CCGC	1 cut(s)	399
BspCNI	CTCAG	6 cut(s)	346, 402, 532, 972, 1279, 1327
BspHI	TCATGA	1 cut(s)	1625
BspLI	GGNNCC	1 cut(s)	674
BspPI	GGATC	3 cut(s)	594, 935, 1061
BspT104I	TTCGAA	1 cut(s)	1085
BsrDI	GCAATG	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	1388
BssAI	RCCGGY	1 cut(s)	1388
BssECI	CCNNGG	5 cut(s)	205, 920, 1032, 1104, 1155
BssMI	GATC	9 cut(s)	16, 333, 586, 652, 769, 883, 927, 1066, 1604
BssNI	GRCGYC	1 cut(s)	1422
BssT1I	CCWWGG	4 cut(s)	205, 1032, 1104, 1155
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	5 cut(s)	261, 709, 745, 1536, 1595
Bst6I	CTCTTC	3 cut(s)	36, 324, 1188
BstACI	GRCGYC	1 cut(s)	1422
BstAPI	GCANNNNNTGC	2 cut(s)	1504, 1509
BstBI	TTCGAA	1 cut(s)	1085
BstC8I	GCNNGC	3 cut(s)	1179, 1390, 1505
BstDEI	CTNAG	9 cut(s)	354, 410, 540, 959, 980, 1266, 1314, 1359, 1484
BstDSI	CCRYGG	4 cut(s)	205, 920, 1104, 1155
BstF5I	GGATG	2 cut(s)	491, 914
BstKTI	GATC	9 cut(s)	19, 336, 589, 655, 772, 886, 930, 1069, 1607
BstMAI	GTCTC	3 cut(s)	1122, 1241, 1315
BstMBI	GATC	9 cut(s)	16, 333, 586, 652, 769, 883, 927, 1066, 1604
BstMWI	GCNNNNNNNGC	5 cut(s)	1058, 1301, 1324, 1504, 1509
BstNI	CCWGG	1 cut(s)	574
BstNSI	RCATGY	3 cut(s)	1165, 1181, 1507
BstSCI	CCNGG	4 cut(s)	157, 572, 1448, 1512
BstSLI	GKGCMC	2 cut(s)	731, 1614
BstV1I	GCAGC	5 cut(s)	222, 241, 1015, 1304, 1478
BstX2I	RGATCY	3 cut(s)	586, 1066, 1604
BstYI	RGATCY	3 cut(s)	586, 1066, 1604
BsuI	GTATCC	1 cut(s)	427
BtgI	CCRYGG	4 cut(s)	205, 920, 1104, 1155
BtgZI	GCGATG	1 cut(s)	987
BtsCI	GGATG	2 cut(s)	491, 914
BtsI	GCAGTG	1 cut(s)	1514
BtsIMutI	CAGTG	2 cut(s)	705, 1514
Cac8I	GCNNGC	3 cut(s)	1179, 1390, 1505
CciI	TCATGA	1 cut(s)	1625
Cfr10I	RCCGGY	1 cut(s)	1388
Cfr13I	GGNCC	1 cut(s)	602
CseI	GACGC	1 cut(s)	1430
CsiI	ACCWGGT	1 cut(s)	572
DdeI	CTNAG	9 cut(s)	354, 410, 540, 959, 980, 1266, 1314, 1359, 1484
DpnI	GATC	9 cut(s)	18, 335, 588, 654, 771, 885, 929, 1068, 1606
DpnII	GATC	9 cut(s)	16, 333, 586, 652, 769, 883, 927, 1066, 1604
Eam1104I	CTCTTC	3 cut(s)	36, 324, 1188
EarI	CTCTTC	3 cut(s)	36, 324, 1188
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	4 cut(s)	205, 1032, 1104, 1155
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	602
Eco53kI	GAGCTC	1 cut(s)	181
Eco88I	CYCGRG	2 cut(s)	419, 564
EcoICRI	GAGCTC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	572
EcoT14I	CCWWGG	4 cut(s)	205, 1032, 1104, 1155
EcoT22I	ATGCAT	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	4 cut(s)	205, 1032, 1104, 1155
Esp3I	CGTCTC	1 cut(s)	1315
FalI	AAGNNNNNCTT	6 cut(s)	375, 407, 439, 471, 716, 748
FbaI	TGATCA	3 cut(s)	652, 769, 883
Fnu4HI	GCNGC	6 cut(s)	211, 255, 399, 1029, 1293, 1467
FokI	GGATG	2 cut(s)	478, 901
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	6 cut(s)	211, 255, 399, 1029, 1293, 1467
FspBI	CTAG	1 cut(s)	593
GluI	GCNGC	6 cut(s)	211, 255, 399, 1029, 1293, 1467
HapII	CCGG	5 cut(s)	158, 1115, 1389, 1449, 1513
HgaI	GACGC	1 cut(s)	1430
Hin1I	GRCGYC	1 cut(s)	1422
HindIII	AAGCTT	3 cut(s)	647, 1325, 1333
HinfI	GANTC	7 cut(s)	44, 472, 805, 990, 1118, 1130, 1373
HpaII	CCGG	5 cut(s)	158, 1115, 1389, 1449, 1513
Hpy166II	GTNNAC	4 cut(s)	58, 729, 875, 1569
Hpy188III	TCNNGA	7 cut(s)	20, 126, 421, 642, 767, 1578, 1626
Hpy8I	GTNNAC	4 cut(s)	58, 729, 875, 1569
Hpy99I	CGWCG	1 cut(s)	1424
HpyAV	CCTTC	5 cut(s)	237, 465, 492, 1092, 1404
HpyCH4III	ACNGT	5 cut(s)	261, 709, 745, 1536, 1595
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1058, 1301, 1324, 1504, 1509
HpyF3I	CTNAG	9 cut(s)	354, 410, 540, 959, 980, 1266, 1314, 1359, 1484
Hsp92I	GRCGYC	1 cut(s)	1422
KroI	GCCGGC	1 cut(s)	1388
KroNI	GCCGGC	1 cut(s)	1390
Ksp22I	TGATCA	3 cut(s)	652, 769, 883
Kzo9I	GATC	9 cut(s)	16, 333, 586, 652, 769, 883, 927, 1066, 1604
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	5 cut(s)	222, 241, 1015, 1304, 1478
LweI	GCATC	3 cut(s)	709, 1010, 1592
MabI	ACCWGGT	1 cut(s)	572
MaeI	CTAG	1 cut(s)	593
MalI	GATC	9 cut(s)	18, 335, 588, 654, 771, 885, 929, 1068, 1606
MboI	GATC	9 cut(s)	16, 333, 586, 652, 769, 883, 927, 1066, 1604
MboII	GAAGA	5 cut(s)	53, 341, 581, 800, 1205
MfeI	CAATTG	1 cut(s)	1319
MflI	RGATCY	3 cut(s)	586, 1066, 1604
MhlI	GDGCHC	4 cut(s)	183, 731, 1492, 1614
MlyI	GAGTC	4 cut(s)	53, 481, 1124, 1367
MmeI	TCCRAC	2 cut(s)	837, 1378
Mph1103I	ATGCAT	1 cut(s)	431
MroNI	GCCGGC	1 cut(s)	1388
MseI	TTAA	3 cut(s)	135, 362, 1329
MslI	CAYNNNNRTG	5 cut(s)	269, 734, 752, 1109, 1160
MspA1I	CMGCKG	1 cut(s)	1469
MspI	CCGG	5 cut(s)	158, 1115, 1389, 1449, 1513
MspR9I	CCNGG	4 cut(s)	159, 574, 1450, 1514
MunI	CAATTG	1 cut(s)	1319
MvaI	CCWGG	1 cut(s)	574
MwoI	GCNNNNNNNGC	5 cut(s)	1058, 1301, 1324, 1504, 1509
NaeI	GCCGGC	1 cut(s)	1390
NciI	CCSGG	3 cut(s)	159, 1450, 1514
NcoI	CCATGG	3 cut(s)	205, 1104, 1155
NdeII	GATC	9 cut(s)	16, 333, 586, 652, 769, 883, 927, 1066, 1604
NgoMIV	GCCGGC	1 cut(s)	1388
NlaIV	GGNNCC	1 cut(s)	674
NsiI	ATGCAT	1 cut(s)	431
NspI	RCATGY	3 cut(s)	1165, 1181, 1507
NspV	TTCGAA	1 cut(s)	1085
OliI	CACNNNNGTG	1 cut(s)	734
PaeI	GCATGC	2 cut(s)	1181, 1507
PaeR7I	CTCGAG	1 cut(s)	419
PagI	TCATGA	1 cut(s)	1625
PciI	ACATGT	1 cut(s)	1161
PdiI	GCCGGC	1 cut(s)	1390
PfeI	GAWTC	3 cut(s)	805, 990, 1118
PflFI	GACNNNGTC	1 cut(s)	349
PflMI	CCANNNNNTGG	1 cut(s)	1156
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	6 cut(s)	212, 256, 400, 1030, 1294, 1468
PleI	GAGTC	4 cut(s)	52, 480, 1124, 1367
PpsI	GAGTC	4 cut(s)	52, 480, 1124, 1367
PscI	ACATGT	1 cut(s)	1161
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	1 cut(s)	674
PspPI	GGNCC	1 cut(s)	602
PsuI	RGATCY	3 cut(s)	586, 1066, 1604
PsyI	GACNNNGTC	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	1469
RseI	CAYNNNNRTG	5 cut(s)	269, 734, 752, 1109, 1160
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	135, 362, 1329
SatI	GCNGC	6 cut(s)	211, 255, 399, 1029, 1293, 1467
Sau3AI	GATC	9 cut(s)	16, 333, 586, 652, 769, 883, 927, 1066, 1604
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	4 cut(s)	53, 481, 1124, 1367
ScrFI	CCNGG	4 cut(s)	159, 574, 1450, 1514
SduI	GDGCHC	4 cut(s)	183, 731, 1492, 1614
SexAI	ACCWGGT	1 cut(s)	572
SfaNI	GCATC	3 cut(s)	709, 1010, 1592
Sfr274I	CTCGAG	1 cut(s)	419
SfuI	TTCGAA	1 cut(s)	1085
SinI	GGWCC	1 cut(s)	602
SlaI	CTCGAG	1 cut(s)	419
SmiMI	CAYNNNNRTG	5 cut(s)	269, 734, 752, 1109, 1160
SmlI	CTYRAG	2 cut(s)	124, 419
SmoI	CTYRAG	2 cut(s)	124, 419
SphI	GCATGC	2 cut(s)	1181, 1507
SsiI	CCGC	1 cut(s)	399
SspI	AATATT	2 cut(s)	235, 894
SspMI	CTAG	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	4 cut(s)	157, 572, 1448, 1512
StyI	CCWWGG	4 cut(s)	205, 1032, 1104, 1155
TaaI	ACNGT	5 cut(s)	261, 709, 745, 1536, 1595
TaqI	TCGA	8 cut(s)	420, 458, 532, 643, 695, 811, 1085, 1419
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	3 cut(s)	805, 990, 1118
Tru1I	TTAA	3 cut(s)	135, 362, 1329
Tru9I	TTAA	3 cut(s)	135, 362, 1329
TscAI	CASTG	2 cut(s)	712, 1514
TseI	GCWGC	5 cut(s)	210, 254, 1028, 1292, 1466
TspDTI	ATGAA	9 cut(s)	40, 253, 287, 480, 510, 1155, 1220, 1443, 1614
TspRI	CASTG	2 cut(s)	712, 1514
Tth111I	GACNNNGTC	1 cut(s)	349
Van91I	CCANNNNNTGG	1 cut(s)	1156
VneI	GTGCAC	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	4 cut(s)	607, 823, 1209, 1415
XceI	RCATGY	3 cut(s)	1165, 1181, 1507
XhoI	CTCGAG	1 cut(s)	419
XspI	CTAG	1 cut(s)	593
Zsp2I	ATGCAT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.