Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000674.1

Orthogroup ID

OG0004787

Physical Location & Seq

Genomic Coordinates Forward (+)

34626 .. 37158

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000674.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

atggaggtttgttgtgatcttgaagtggatgttaatggtgaggagtctttcatggtgaacaagagagttattgcttcctattcgggcaagttgagcaagttacttggcaaatcaaaaggttccacaagaaatcttaaagttgtcttccatgactttccaggaagggcagagagttttgagctcatttcaaggttctgctacaacaatggcagcattgacataactccttccaatatttccctcctacattttgctgccattttcatggaaatgaacatttctgtttccggagcacgcaatttgtttgaaaaaaccgagaaatcacttgaagagatgaggtattggacttggtctgagctcttgattgctttgaagcagtgccaagatttacttccggcaactaattgtttgcctctacttgagaaatgcttggattgcattgtgggaagactggctttggccagtgaagctagtccatgtccttcaacttcatccccagatagctctggcattcggttttcgtgtgacactagaagcaccgagagcttgaaaaccagctcctctcgctcaacatggtggttcgaggatcttctagttttaggtcccaatttggttgaaatgctggtgaagtccatggttactcgaaagtttgatcatgttactatcagtaggttcctcttttattaccagaaatcgaagttctacactgtcgaatccgatgccaagcgcactattgcagaagcagtcattgatatgctttacattcttgatcagagctctgtttcttgcaaaactttgttttggattcttcgtgttgttcagaatataaacataaacaaaagcagcaggaataagttggagagcatgattggctcacagttggatcaagcatcattggataacttgcttgttccttccccacatgggatcaatcacttgtatgatgtcaatcttgttttgaggtttttgaactcatttctgcgcggaggaacagcaaaagcgtctcctatgagattgaggaaagttggagtcttggtggatttgtatatagcagaagtagccccagatccttgtttaaggccttcaaagtttctggctttagccatgctcctgccagatgctgctagagactcctatgatgaactttaccgtgccatcgatatgtatctagaggtacatggaggattgtccgaagaggaaaagatgaaactctgttgtttatttaactatgagaagctctcggaagaagcttgcatacacctttctcagaatgcaaaattcccatcaaaatcagcagtccaagctctcatttctcagcaagtcaagcttaagagcttagttcatgccactaacaatcccaagtcctatggtgactccccttttagtgtcgctgaggtagataatgagggaaggaatgatcatgattccaatgaacaacgcgtgctttatgctggaaaacttgatctctcggctgacaacgagaaactgagagaacatttacagggtatgcagtggagggtcatggagttggaaaaaatgtgcaagaaaatgcaaacccaaatggcaaagctcacaaaatcaagagtgttatcaagccacagtcatgcaagatctttgcccaaactttgttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

544

Amino Acids

61.34

Weight (kDa)

7.81

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22104 AT3G22104 AT3G22104 AT3G22104
fragaria_vesca	FvH4_6g43790 FvH4_6g43790 FvH4_6g43790 FvH4_6g43790
malus_domestica	MD09G1102800.v1.1 MD17G1090600.v1.1
prunus_persica	Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1
pyrus_communis	pycom09g02610 pycom17g08750
rosa_chinensis	RchiOBHm_Chr2g0160551
rosa_laevigata	RLG00000021221
rosa_multiflora	Rmu_sc0000674.1_g000007
rosa_roxburghii	Rroxscaffold_2G00089730
rosa_rugosa	Rorug02G0483700 Rorug02G0483700 Rorug02G0483700
rosa_samantha	Rh2AG549000 Rh2BG562700 Rh2CG533300 Rh2DG572000
rosa_wichuraiana	Rw2G045450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	984, 1440
AccIII	TCCGGA	1 cut(s)	287
AciI	CCGC	1 cut(s)	984
AclWI	GGATC	4 cut(s)	594, 891, 935, 1061
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	1277
AfaI	GTAC	1 cut(s)	1176
AfiI	CCNNNNNNNGG	1 cut(s)	924
AflII	CTTAAG	1 cut(s)	1328
AflIII	ACRYGT	1 cut(s)	1438
AjnI	CCWGG	1 cut(s)	157
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
Alw21I	GWGCWC	4 cut(s)	183, 295, 360, 779
Alw26I	GTCTC	2 cut(s)	1008, 1122
AlwI	GGATC	4 cut(s)	594, 891, 935, 1061
AlwNI	CAGNNNCTG	1 cut(s)	1121
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	2 cut(s)	459, 1079
ApeKI	GCWGC	4 cut(s)	210, 254, 843, 1121
ApoI	RAATTY	1 cut(s)	1277
AspLEI	GCGC	2 cut(s)	729, 984
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	4 cut(s)	50, 67, 637, 1382
AvaII	GGWCC	1 cut(s)	602
BalI	TGGCCA	1 cut(s)	461
BanII	GRGCYC	3 cut(s)	183, 360, 779
BarI	GAAGNNNNNNTAC	2 cut(s)	1239, 1271
BbsI	GAAGAC	2 cut(s)	136, 454
Bbv12I	GWGCWC	4 cut(s)	183, 295, 360, 779
BbvCI	CCTCAGC	1 cut(s)	1392
BbvI	GCAGC	4 cut(s)	222, 241, 855, 1108
BccI	CCATC	2 cut(s)	1163, 1291
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BciT130I	CCWGG	1 cut(s)	159
BclI	TGATCA	3 cut(s)	652, 769, 1417
BcoDI	GTCTC	2 cut(s)	1008, 1122
BfaI	CTAG	5 cut(s)	471, 531, 593, 1125, 1169
BfrI	CTTAAG	1 cut(s)	1328
BglII	AGATCT	1 cut(s)	1610
BisI	GCNGC	4 cut(s)	211, 255, 844, 1122
BlsI	GCNGC	4 cut(s)	212, 256, 845, 1123
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	3 cut(s)	121, 604, 674
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	3 cut(s)	709, 899, 1108
BpiI	GAAGAC	2 cut(s)	136, 454
BplI	GAGNNNNNCTC	2 cut(s)	1223, 1255
Bpu10I	CCTNAGC	1 cut(s)	1392
BpuEI	CTTGAG	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	1158
BsaBI	GATNNNNATC	2 cut(s)	948, 1164
BsaJI	CCNNGG	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	1020, 1050
Bsc4I	CCNNNNNNNGG	1 cut(s)	924
Bse1I	ACTGG	2 cut(s)	456, 462
Bse8I	GATNNNNATC	2 cut(s)	948, 1164
BseAI	TCCGGA	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	159
BseCI	ATCGAT	1 cut(s)	1158
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	2 cut(s)	34, 491
BseJI	GATNNNNATC	2 cut(s)	948, 1164
BseLI	CCNNNNNNNGG	1 cut(s)	924
BseMII	CTCAG	5 cut(s)	345, 1280, 1328, 1383, 1478
BseNI	ACTGG	2 cut(s)	456, 462
BseRI	GAGGAG	2 cut(s)	56, 550
BseXI	GCAGC	4 cut(s)	222, 241, 855, 1108
Bsh1236I	CGCG	2 cut(s)	984, 1440
BshFI	GGCC	2 cut(s)	461, 1081
BshVI	ATCGAT	1 cut(s)	1158
BsiHKAI	GWGCWC	4 cut(s)	183, 295, 360, 779
BsiSI	CCGG	2 cut(s)	288, 395
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	1 cut(s)	924
BsmAI	GTCTC	2 cut(s)	1008, 1122
BsmBI	CGTCTC	1 cut(s)	1008
BsmFI	GGGAC	1 cut(s)	588
BsmI	GAATGC	2 cut(s)	510, 1276
BsnI	GGCC	2 cut(s)	461, 1081
Bsp1286I	GDGCHC	4 cut(s)	183, 295, 360, 779
Bsp13I	TCCGGA	1 cut(s)	287
Bsp19I	CCATGG	1 cut(s)	633
BspACI	CCGC	1 cut(s)	984
BspANI	GGCC	2 cut(s)	461, 1081
BspCNI	CTCAG	5 cut(s)	346, 1279, 1327, 1384, 1479
BspDI	ATCGAT	1 cut(s)	1158
BspEI	TCCGGA	1 cut(s)	287
BspFNI	CGCG	2 cut(s)	984, 1440
BspHI	TCATGA	2 cut(s)	1420, 1631
BspLI	GGNNCC	3 cut(s)	121, 604, 674
BspPI	GGATC	4 cut(s)	594, 891, 935, 1061
BspTI	CTTAAG	1 cut(s)	1328
BsrI	ACTGG	2 cut(s)	456, 462
BssECI	CCNNGG	1 cut(s)	633
BssT1I	CCWWGG	1 cut(s)	633
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	4 cut(s)	709, 879, 1151, 1601
Bst6I	CTCTTC	2 cut(s)	324, 1188
BstAFI	CTTAAG	1 cut(s)	1328
BstC8I	GCNNGC	3 cut(s)	295, 1252, 1442
BstDEI	CTNAG	6 cut(s)	354, 1266, 1314, 1336, 1392, 1487
BstDSI	CCRYGG	1 cut(s)	633
BstF5I	GGATG	2 cut(s)	34, 491
BstFNI	CGCG	2 cut(s)	984, 1440
BstHHI	GCGC	2 cut(s)	729, 984
BstMAI	GTCTC	2 cut(s)	1008, 1122
BstMWI	GCNNNNNNNGC	9 cut(s)	93, 435, 467, 543, 564, 870, 1058, 1301, 1324
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstUI	CGCG	2 cut(s)	984, 1440
BstV1I	GCAGC	4 cut(s)	222, 241, 855, 1108
BstV2I	GAAGAC	2 cut(s)	136, 454
BstX2I	RGATCY	3 cut(s)	586, 1066, 1610
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	3 cut(s)	586, 1066, 1610
Bsu15I	ATCGAT	1 cut(s)	1158
BsuRI	GGCC	2 cut(s)	461, 1081
BsuTUI	ATCGAT	1 cut(s)	1158
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	2 cut(s)	34, 491
BtsI	GCAGTG	2 cut(s)	383, 1517
BtsIMutI	CAGTG	4 cut(s)	383, 469, 705, 1517
Cac8I	GCNNGC	3 cut(s)	295, 1252, 1442
CaiI	CAGNNNCTG	1 cut(s)	1121
CciI	TCATGA	2 cut(s)	1420, 1631
CfoI	GCGC	2 cut(s)	729, 984
Cfr13I	GGNCC	1 cut(s)	602
ClaI	ATCGAT	1 cut(s)	1158
CseI	GACGC	1 cut(s)	990
Csp6I	GTAC	1 cut(s)	1175
CviQI	GTAC	1 cut(s)	1175
DdeI	CTNAG	6 cut(s)	354, 1266, 1314, 1336, 1392, 1487
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	2 cut(s)	324, 1188
EarI	CTCTTC	2 cut(s)	324, 1188
Ecl136II	GAGCTC	3 cut(s)	181, 358, 777
Eco130I	CCWWGG	1 cut(s)	633
Eco147I	AGGCCT	1 cut(s)	1081
Eco24I	GRGCYC	3 cut(s)	183, 360, 779
Eco47I	GGWCC	1 cut(s)	602
Eco53kI	GAGCTC	3 cut(s)	181, 358, 777
EcoICRI	GAGCTC	3 cut(s)	181, 358, 777
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	633
EcoT38I	GRGCYC	3 cut(s)	183, 360, 779
ErhI	CCWWGG	1 cut(s)	633
Esp3I	CGTCTC	1 cut(s)	1008
FalI	AAGNNNNNCTT	6 cut(s)	375, 407, 439, 471, 1311, 1343
FaqI	GGGAC	1 cut(s)	588
FbaI	TGATCA	3 cut(s)	652, 769, 1417
Fnu4HI	GCNGC	4 cut(s)	211, 255, 844, 1122
FokI	GGATG	2 cut(s)	41, 478
FriOI	GRGCYC	3 cut(s)	183, 360, 779
Fsp4HI	GCNGC	4 cut(s)	211, 255, 844, 1122
FspBI	CTAG	5 cut(s)	471, 531, 593, 1125, 1169
GlaI	GCGC	2 cut(s)	728, 983
GluI	GCNGC	4 cut(s)	211, 255, 844, 1122
HaeIII	GGCC	2 cut(s)	461, 1081
HapII	CCGG	2 cut(s)	288, 395
HgaI	GACGC	1 cut(s)	990
HhaI	GCGC	2 cut(s)	729, 984
Hin6I	GCGC	2 cut(s)	727, 982
HinP1I	GCGC	2 cut(s)	727, 982
HindIII	AAGCTT	2 cut(s)	1248, 1325
HinfI	GANTC	7 cut(s)	44, 713, 805, 1029, 1130, 1373, 1424
HpaII	CCGG	2 cut(s)	288, 395
HphI	GGTGA	4 cut(s)	50, 67, 637, 1382
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	7 cut(s)	355, 718, 774, 822, 1192, 1243, 1269
Hpy188III	TCNNGA	8 cut(s)	20, 288, 361, 767, 1169, 1421, 1581, 1632
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	6 cut(s)	156, 237, 492, 924, 1092, 1404
HpyCH4III	ACNGT	4 cut(s)	709, 879, 1151, 1601
HpyCH4V	TGCA	9 cut(s)	438, 737, 789, 1254, 1274, 1510, 1542, 1552, 1607
HpyF10VI	GCNNNNNNNGC	9 cut(s)	93, 435, 467, 543, 564, 870, 1058, 1301, 1324
HpyF3I	CTNAG	6 cut(s)	354, 1266, 1314, 1336, 1392, 1487
HspAI	GCGC	2 cut(s)	727, 982
Kpn2I	TCCGGA	1 cut(s)	287
Ksp22I	TGATCA	3 cut(s)	652, 769, 1417
LmnI	GCTCC	3 cut(s)	290, 563, 1113
Lsp1109I	GCAGC	4 cut(s)	222, 241, 855, 1108
LweI	GCATC	3 cut(s)	709, 899, 1108
MaeI	CTAG	5 cut(s)	471, 531, 593, 1125, 1169
MaeIII	GTNAC	5 cut(s)	99, 524, 637, 658, 1370
MboII	GAAGA	7 cut(s)	136, 341, 459, 581, 800, 1205, 1256
MflI	RGATCY	3 cut(s)	586, 1066, 1610
MhlI	GDGCHC	4 cut(s)	183, 295, 360, 779
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	4 cut(s)	298, 403, 607, 1277
MluI	ACGCGT	1 cut(s)	1438
MluNI	TGGCCA	1 cut(s)	461
MlyI	GAGTC	4 cut(s)	53, 1038, 1124, 1367
MmeI	TCCRAC	4 cut(s)	837, 861, 1006, 1509
Mox20I	TGGCCA	1 cut(s)	461
MroI	TCCGGA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	5 cut(s)	33, 135, 1076, 1224, 1329
MslI	CAYNNNNRTG	6 cut(s)	263, 269, 752, 939, 1160, 1602
Msp20I	TGGCCA	1 cut(s)	461
MspCI	CTTAAG	1 cut(s)	1328
MspI	CCGG	2 cut(s)	288, 395
MspR9I	CCNGG	1 cut(s)	159
Mva1269I	GAATGC	2 cut(s)	510, 1276
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	2 cut(s)	984, 1440
MwoI	GCNNNNNNNGC	9 cut(s)	93, 435, 467, 543, 564, 870, 1058, 1301, 1324
NcoI	CCATGG	1 cut(s)	633
NlaIV	GGNNCC	3 cut(s)	121, 604, 674
NmeAIII	GCCGAG	1 cut(s)	1448
NmuCI	GTSAC	2 cut(s)	524, 1370
PagI	TCATGA	2 cut(s)	1420, 1631
PceI	AGGCCT	1 cut(s)	1081
PctI	GAATGC	2 cut(s)	510, 1276
PfeI	GAWTC	3 cut(s)	713, 805, 1424
PflFI	GACNNNGTC	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	212, 256, 845, 1123
PleI	GAGTC	4 cut(s)	52, 1037, 1124, 1367
PpsI	GAGTC	4 cut(s)	52, 1037, 1124, 1367
PpuMI	RGGWCCY	1 cut(s)	602
Psp124BI	GAGCTC	3 cut(s)	183, 360, 779
Psp5II	RGGWCCY	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	121, 604, 674
PspPI	GGNCC	1 cut(s)	602
PspPPI	RGGWCCY	1 cut(s)	602
PstNI	CAGNNNCTG	1 cut(s)	1121
PsuI	RGATCY	3 cut(s)	586, 1066, 1610
PsyI	GACNNNGTC	1 cut(s)	349
RsaI	GTAC	1 cut(s)	1176
RsaNI	GTAC	1 cut(s)	1175
RseI	CAYNNNNRTG	6 cut(s)	263, 269, 752, 939, 1160, 1602
SacI	GAGCTC	3 cut(s)	183, 360, 779
SaqAI	TTAA	5 cut(s)	33, 135, 1076, 1224, 1329
SatI	GCNGC	4 cut(s)	211, 255, 844, 1122
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	4 cut(s)	53, 1038, 1124, 1367
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	4 cut(s)	183, 295, 360, 779
SfaNI	GCATC	3 cut(s)	709, 899, 1108
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	6 cut(s)	263, 269, 752, 939, 1160, 1602
SmlI	CTYRAG	2 cut(s)	419, 1328
SmoI	CTYRAG	2 cut(s)	419, 1328
Sse9I	AATT	4 cut(s)	298, 403, 607, 1277
SseBI	AGGCCT	1 cut(s)	1081
SsiI	CCGC	1 cut(s)	984
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	5 cut(s)	471, 531, 593, 1125, 1169
SstI	GAGCTC	3 cut(s)	183, 360, 779
StuI	AGGCCT	1 cut(s)	1081
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	633
TaaI	ACNGT	4 cut(s)	709, 879, 1151, 1601
TaqI	TCGA	5 cut(s)	582, 643, 695, 711, 1158
TasI	AATT	4 cut(s)	298, 403, 607, 1277
TfiI	GAWTC	3 cut(s)	713, 805, 1424
Tru1I	TTAA	5 cut(s)	33, 135, 1076, 1224, 1329
Tru9I	TTAA	5 cut(s)	33, 135, 1076, 1224, 1329
TscAI	CASTG	4 cut(s)	383, 469, 712, 1517
TseFI	GTSAC	2 cut(s)	524, 1370
TseI	GCWGC	4 cut(s)	210, 254, 843, 1121
Tsp45I	GTSAC	2 cut(s)	524, 1370
TspDTI	ATGAA	9 cut(s)	40, 253, 287, 480, 1155, 1220, 1331, 1446, 1620
TspRI	CASTG	4 cut(s)	383, 469, 712, 1517
Tth111I	GACNNNGTC	1 cut(s)	349
Vha464I	CTTAAG	1 cut(s)	1328
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	1 cut(s)	1277
XbaI	TCTAGA	1 cut(s)	1168
XspI	CTAG	5 cut(s)	471, 531, 593, 1125, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.