Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004787

Physical Location & Seq

Genomic Coordinates Reverse (-)

6599443 .. 6600605

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g08750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCTTGTCAAGGCCATGGTTTCACGAAAACTCGATCATGTTATCATTAGTAGGTTCCTCTTTTATTACCAGAAATCGAAGTTTTACACGGTCAAATCTGATACCAAGCGCACCATTGCTGAAACGGTCATTGAGATGCTGTTTATGCTTGATCAGAGCTGTGTTTCTTGCAAGAGCTTATTCGGGATTCTACATGTTTCGCTGAATTTTAACTTAAACAGAAGTATCAGGAATAAGTTGGAGAATATGATTGGTTCACAACTAGATAAAGCAACATTGGACAATTTGCTTGTTCCATCCCCACAAGGAATCAATTACTTGTATGATGTCAATCTTGTTCTAAGGTTCTTGAAATCATTTCTGCGTGATGGAGGAACCTGTCAAGCGTCTCCAATCCGATTAAGGAAAGTTTCTGGCTTGGTTGATTTGTATATAGCAGAAGTAGCCCCAGATCCTTGTTTGAAGCATTCAAAGTTTCTGGCTTTAGCTATCGCCCTGCCGGATTCGGCAAGAGACTCCTATGATGAGCTCTACCATGCCATAGACATGTATATACAGGTGCACGCAGGATTGTCTGAAGACAAAAAGATGAAAATATGTTGTGTGCTGAACTATGAGAAGCTCTCGGCAGAGACTTGTATACACCTTTCAAAGAACACAAAATTTCCATCAAAATCTGCAGTCCAAGCTCTTGTCTCTCAGCAATCCAAGCTCAAAAAGTTACTCCAAACAACCAACAACTTTAATTCCTATGCCACCTCCCCTTATAGCGCCACCACTGAGGCAAAAAATTGGGGACTAAGGAAAGATGATGCCAACGAACAAAATGTGCTTTACGCCGGAAAACTCGATCTCTCAACTGACAAGGTGAAGCTCAGAGCACATTTGCAAGGCATGCAATGCAGGGTCATGGAATTGGAGAAAGTTTGCAAGAAAATGCAATCTCAAATGGCAAAGTTTACAAAATCGAAAGCATCAAGCCACAGCCATACAAGATCATTGCCCAAACTTTGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

340

Amino Acids

38.34

Weight (kDa)

9.45

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22104 AT3G22104 AT3G22104 AT3G22104
fragaria_vesca	FvH4_6g43790 FvH4_6g43790 FvH4_6g43790 FvH4_6g43790
malus_domestica	MD09G1102800.v1.1 MD17G1090600.v1.1
prunus_persica	Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1 Prupe.3G223000_v2.0.a1
pyrus_communis	pycom09g02610 pycom17g08750
rosa_chinensis	RchiOBHm_Chr2g0160551
rosa_laevigata	RLG00000021221
rosa_multiflora	Rmu_sc0000674.1_g000007
rosa_roxburghii	Rroxscaffold_2G00089730
rosa_rugosa	Rorug02G0483700 Rorug02G0483700 Rorug02G0483700
rosa_samantha	Rh2AG549000 Rh2BG562700 Rh2CG533300 Rh2DG572000
rosa_wichuraiana	Rw2G045450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	640
AclWI	GGATC	1 cut(s)	446
AcsI	RAATTY	2 cut(s)	205, 662
AcuI	CTGAAG	1 cut(s)	597
AflIII	ACRYGT	2 cut(s)	193, 546
AgsI	TTSAA	4 cut(s)	352, 463, 471, 651
AluBI	AGCT	8 cut(s)	159, 177, 488, 529, 622, 689, 712, 874
AluI	AGCT	8 cut(s)	159, 177, 488, 529, 622, 689, 712, 874
Alw21I	GWGCWC	3 cut(s)	531, 564, 883
Alw26I	GTCTC	4 cut(s)	393, 507, 626, 700
Alw44I	GTGCAC	1 cut(s)	560
AlwI	GGATC	1 cut(s)	446
AoxI	GGCC	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	560
ApoI	RAATTY	2 cut(s)	205, 662
AspLEI	GCGC	2 cut(s)	111, 773
AsuHPI	GGTGA	1 cut(s)	880
BaeGI	GKGCMC	1 cut(s)	564
BaeI	ACNNNNGTAYC	2 cut(s)	208, 241
BanII	GRGCYC	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	3 cut(s)	531, 564, 883
BccI	CCATC	3 cut(s)	304, 362, 676
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	4 cut(s)	393, 507, 626, 700
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	774
BmiI	GGNNCC	2 cut(s)	56, 376
BmsI	GCATC	3 cut(s)	126, 802, 983
BpiI	GAAGAC	1 cut(s)	585
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	15
Bse3DI	GCAATG	3 cut(s)	114, 905, 998
Bse8I	GATNNNNATC	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	296
BseJI	GATNNNNATC	1 cut(s)	330
BseMI	GCAATG	3 cut(s)	114, 905, 998
BseMII	CTCAG	3 cut(s)	713, 771, 889
BseSI	GKGCMC	1 cut(s)	564
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	3 cut(s)	531, 564, 883
BsiSI	CCGG	2 cut(s)	500, 840
BslFI	GGGAC	1 cut(s)	810
BsmAI	GTCTC	4 cut(s)	393, 507, 626, 700
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	810
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	3 cut(s)	531, 564, 883
Bsp143I	GATC	5 cut(s)	34, 151, 451, 850, 995
Bsp19I	CCATGG	1 cut(s)	15
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	3 cut(s)	712, 772, 888
BspHI	TCATGA	1 cut(s)	1016
BspLI	GGNNCC	2 cut(s)	56, 376
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	1 cut(s)	446
BsrDI	GCAATG	3 cut(s)	114, 905, 998
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	5 cut(s)	34, 151, 451, 850, 995
BssNAI	GTATAC	1 cut(s)	641
BssT1I	CCWWGG	1 cut(s)	15
Bst1107I	GTATAC	1 cut(s)	641
Bst4CI	ACNGT	2 cut(s)	91, 127
BstAPI	GCANNNNNTGC	2 cut(s)	895, 900
BstC8I	GCNNGC	2 cut(s)	564, 896
BstDEI	CTNAG	5 cut(s)	341, 699, 780, 800, 875
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	296
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	2 cut(s)	111, 773
BstKTI	GATC	5 cut(s)	37, 154, 454, 853, 998
BstMAI	GTCTC	4 cut(s)	393, 507, 626, 700
BstMBI	GATC	5 cut(s)	34, 151, 451, 850, 995
BstMWI	GCNNNNNNNGC	6 cut(s)	145, 443, 686, 709, 895, 900
BstNSI	RCATGY	3 cut(s)	197, 550, 898
BstSFI	CTRYAG	1 cut(s)	678
BstSLI	GKGCMC	1 cut(s)	564
BstV2I	GAAGAC	1 cut(s)	585
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BstZ17I	GTATAC	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	777
Cac8I	GCNNGC	2 cut(s)	564, 896
CciI	TCATGA	1 cut(s)	1016
CfoI	GCGC	2 cut(s)	111, 773
CseI	GACGC	1 cut(s)	375
CviAII	CATG	8 cut(s)	16, 38, 194, 536, 547, 895, 910, 1017
DdeI	CTNAG	5 cut(s)	341, 699, 780, 800, 875
DpnI	GATC	5 cut(s)	36, 153, 453, 852, 997
DpnII	GATC	5 cut(s)	34, 151, 451, 850, 995
Ecl136II	GAGCTC	1 cut(s)	529
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	531
Eco53kI	GAGCTC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	597
EcoICRI	GAGCTC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	8 cut(s)	19, 41, 197, 539, 550, 898, 913, 1020
FaqI	GGGAC	1 cut(s)	810
FatI	CATG	8 cut(s)	15, 37, 193, 535, 546, 894, 909, 1016
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	640
FokI	GGATG	1 cut(s)	283
FriOI	GRGCYC	1 cut(s)	531
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	2 cut(s)	110, 772
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	2 cut(s)	500, 840
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	2 cut(s)	111, 773
Hin1II	CATG	8 cut(s)	19, 41, 197, 539, 550, 898, 913, 1020
Hin6I	GCGC	2 cut(s)	109, 771
HinP1I	GCGC	2 cut(s)	109, 771
HinfI	GANTC	4 cut(s)	187, 309, 503, 515
HpaII	CCGG	2 cut(s)	500, 840
HphI	GGTGA	1 cut(s)	880
Hpy166II	GTNNAC	4 cut(s)	257, 562, 641, 960
Hpy188I	TCNGA	5 cut(s)	100, 156, 398, 577, 878
Hpy188III	TCNNGA	5 cut(s)	24, 184, 229, 349, 1017
Hpy8I	GTNNAC	4 cut(s)	257, 562, 641, 960
HpyCH4III	ACNGT	2 cut(s)	91, 127
HpyCH4V	TGCA	8 cut(s)	171, 562, 680, 889, 898, 903, 930, 940
HpyF10VI	GCNNNNNNNGC	6 cut(s)	145, 443, 686, 709, 895, 900
HpyF3I	CTNAG	5 cut(s)	341, 699, 780, 800, 875
Hsp92II	CATG	8 cut(s)	19, 41, 197, 539, 550, 898, 913, 1020
HspAI	GCGC	2 cut(s)	109, 771
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	34, 151, 451, 850, 995
LweI	GCATC	3 cut(s)	126, 802, 983
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	720
MalI	GATC	5 cut(s)	36, 153, 453, 852, 997
MboI	GATC	5 cut(s)	34, 151, 451, 850, 995
MboII	GAAGA	1 cut(s)	590
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	3 cut(s)	531, 564, 883
MluCI	AATT	7 cut(s)	205, 283, 313, 662, 745, 790, 914
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	4 cut(s)	68, 365, 769, 775
MseI	TTAA	4 cut(s)	210, 215, 401, 744
MslI	CAYNNNNRTG	2 cut(s)	134, 545
MspI	CCGG	2 cut(s)	500, 840
Mva1269I	GAATGC	1 cut(s)	466
MwoI	GCNNNNNNNGC	6 cut(s)	145, 443, 686, 709, 895, 900
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	5 cut(s)	34, 151, 451, 850, 995
NlaIII	CATG	8 cut(s)	19, 41, 197, 539, 550, 898, 913, 1020
NlaIV	GGNNCC	2 cut(s)	56, 376
NmeAIII	GCCGAG	1 cut(s)	605
NspI	RCATGY	3 cut(s)	197, 550, 898
PaeI	GCATGC	1 cut(s)	898
PagI	TCATGA	1 cut(s)	1016
PciI	ACATGT	2 cut(s)	193, 546
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	3 cut(s)	187, 309, 503
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
PscI	ACATGT	2 cut(s)	193, 546
Psp124BI	GAGCTC	1 cut(s)	531
PspN4I	GGNNCC	2 cut(s)	56, 376
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	1 cut(s)	451
RseI	CAYNNNNRTG	2 cut(s)	134, 545
SacI	GAGCTC	1 cut(s)	531
SaqAI	TTAA	4 cut(s)	210, 215, 401, 744
Sau3AI	GATC	5 cut(s)	34, 151, 451, 850, 995
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	3 cut(s)	531, 564, 883
SfaNI	GCATC	3 cut(s)	126, 802, 983
SfcI	CTRYAG	1 cut(s)	678
SmiMI	CAYNNNNRTG	2 cut(s)	134, 545
SphI	GCATGC	1 cut(s)	898
Sse9I	AATT	7 cut(s)	205, 283, 313, 662, 745, 790, 914
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	531
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	91, 127
TaqI	TCGA	4 cut(s)	33, 77, 849, 968
TasI	AATT	7 cut(s)	205, 283, 313, 662, 745, 790, 914
TfiI	GAWTC	3 cut(s)	187, 309, 503
Tru1I	TTAA	4 cut(s)	210, 215, 401, 744
Tru9I	TTAA	4 cut(s)	210, 215, 401, 744
TscAI	CASTG	1 cut(s)	784
TspDTI	ATGAA	2 cut(s)	605, 1005
TspRI	CASTG	1 cut(s)	784
VneI	GTGCAC	1 cut(s)	560
XapI	RAATTY	2 cut(s)	205, 662
XceI	RCATGY	3 cut(s)	197, 550, 898
XmiI	GTMKAC	1 cut(s)	640
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.