Rorug02G0483700

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000768
Physical Location & Seq
Reverse (-)
61352173 .. 61355752
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0483700.1

Sequence Viewer

Length: 879 bp
ATGGGTCTTATTCCATGTCCTCCACAATACAAAATAACAAAAGAGGGTAGTATTACCTCAGAGCTTACACAAGAGTATAAGGCTTGGAGGAGGAATGACTCTGCTTTAATGACATTACTAGCTGGTACTTTGTCCCTCAATGCTCTTTCTTTTATTGTTGGGAGCAAAACCTCAAAAGATGTCTGGTTTTCGCTTTATGAGAGGTATGCTAAACTTTCAAAGTTCAAAGCTTTCGAGCTCCAGACCTCAATGCAGAAAATTCATAAAGGGAAAGATAGTATAGACAAGTATATGAAACGTTTTAAAACTGTCCGGGACCAACTCTCTGTTGCTGGAATTTCCATTCCTGATGACGATATAGTGTTTCTGATCCTAAATGGATTGCCTGTTGAATATGCGACCATAAAGACTGTCATCAGAGCCCAACAGATGCCAATATCTCTAAGCGAGCTTCGCACAATATTATTGGATGCTGAGTCTGATATTGTTCAAGAATCAAGATCATTTGCTTCTGCTCCTGTGCTGAAGCACAAAGCACTACCATTGCCTTTTCTTACAGCCATGATTGCACAGAATGGAATTGCTAATGGAAATGCATTTATCAATCCTGCAACTTATGGTCTATCCACTGGAACTACCCATATAAATGCTTATAATGGTCATAGGCTGCGTTTGGGGGGGCTTTTTTGCTCCCCCGCTTATAAGCACCTCGGCATCTCGCGTTTGGTTAAGAACATATTTGTCCCAACGGGAGCTTCCCTTTCACCAGATGTATCTGCTCCACTTGTTGCAACCCTTCCCTTGGAGATTAAGAGCAAAATTGAGGAGTTGATCAAGTCTGTATTTGCTCTATTTCAATGTGTGTTAGAAAGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

292

Amino Acids

32.18

Weight (kDa)

9.37

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 17 - 162 5.9e-20 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 654, 702
AccII CGCG 1 cut(s) 721
AciI CCGC 1 cut(s) 696
AclI AACGTT 1 cut(s) 298
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 2 cut(s) 258, 336
AcuI CTGAAG 1 cut(s) 545
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 802
AgsI TTSAA 5 cut(s) 219, 226, 392, 491, 857
AjuI GAANNNNNNNTTGG 2 cut(s) 739, 771
AluBI AGCT 6 cut(s) 64, 122, 230, 238, 451, 755
AluI AGCT 6 cut(s) 64, 122, 230, 238, 451, 755
Alw21I GWGCWC 1 cut(s) 240
AlwI GGATC 1 cut(s) 364
ApeKI GCWGC 1 cut(s) 667
ApoI RAATTY 2 cut(s) 258, 336
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 756
AvaII GGWCC 1 cut(s) 316
BanII GRGCYC 2 cut(s) 240, 424
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 654
BclI TGATCA 1 cut(s) 831
BcnI CCSGG 1 cut(s) 314
BfaI CTAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 668
BlsI GCNGC 1 cut(s) 669
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 3 cut(s) 420, 460, 723
BpmI CTGGAG 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 709, 801
Bsc4I CCNNNNNNNGG 1 cut(s) 802
Bse1I ACTGG 1 cut(s) 634
Bse3DI GCAATG 1 cut(s) 542
BseDI CCNNGG 2 cut(s) 709, 801
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 1 cut(s) 802
BseMI GCAATG 1 cut(s) 542
BseMII CTCAG 2 cut(s) 72, 465
BseNI ACTGG 1 cut(s) 634
BseRI GAGGAG 2 cut(s) 103, 839
BseXI GCAGC 1 cut(s) 654
Bsh1236I CGCG 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 313
BslFI GGGAC 3 cut(s) 118, 329, 728
BslI CCNNNNNNNGG 1 cut(s) 802
BsmFI GGGAC 3 cut(s) 118, 329, 728
Bsp1286I GDGCHC 2 cut(s) 240, 424
Bsp143I GATC 3 cut(s) 369, 500, 831
BspACI CCGC 1 cut(s) 696
BspCNI CTCAG 2 cut(s) 71, 466
BspFNI CGCG 1 cut(s) 721
BspLI GGNNCC 1 cut(s) 317
BspPI GGATC 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 542
BsrI ACTGG 1 cut(s) 634
BssECI CCNNGG 2 cut(s) 709, 801
BssMI GATC 3 cut(s) 369, 500, 831
BssT1I CCWWGG 1 cut(s) 801
Bst4CI ACNGT 2 cut(s) 310, 412
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 3 cut(s) 58, 443, 474
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 721
BstKTI GATC 3 cut(s) 372, 503, 834
BstMBI GATC 3 cut(s) 369, 500, 831
BstMWI GCNNNNNNNGC 2 cut(s) 453, 566
BstSCI CCNGG 1 cut(s) 312
BstUI CGCG 1 cut(s) 721
BstV1I GCAGC 1 cut(s) 654
BtsCI GGATG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 1 cut(s) 449
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 126
CviAII CATG 2 cut(s) 15, 562
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 3 cut(s) 58, 443, 474
DpnI GATC 3 cut(s) 371, 502, 833
DpnII GATC 3 cut(s) 369, 500, 831
DraI TTTAAA 1 cut(s) 304
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 801
Eco24I GRGCYC 2 cut(s) 240, 424
Eco47I GGWCC 1 cut(s) 316
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 545
EcoICRI GAGCTC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 801
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 2 cut(s) 240, 424
ErhI CCWWGG 1 cut(s) 801
FaeI CATG 2 cut(s) 18, 565
FaqI GGGAC 3 cut(s) 118, 329, 728
FatI CATG 2 cut(s) 14, 561
FauI CCCGC 1 cut(s) 703
FbaI TGATCA 1 cut(s) 831
Fnu4HI GCNGC 1 cut(s) 668
FokI GGATG 1 cut(s) 482
FriOI GRGCYC 2 cut(s) 240, 424
Fsp4HI GCNGC 1 cut(s) 668
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 668
GsuI CTGGAG 1 cut(s) 224
HapII CCGG 1 cut(s) 313
Hin1II CATG 2 cut(s) 18, 565
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 3 cut(s) 98, 476, 494
HpaII CCGG 1 cut(s) 313
HphI GGTGA 1 cut(s) 756
Hpy188I TCNGA 4 cut(s) 61, 369, 419, 481
Hpy188III TCNNGA 4 cut(s) 241, 347, 491, 498
HpyAV CCTTC 1 cut(s) 806
HpyCH4III ACNGT 2 cut(s) 310, 412
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 5 cut(s) 253, 569, 596, 611, 791
HpyF10VI GCNNNNNNNGC 2 cut(s) 453, 566
HpyF3I CTNAG 3 cut(s) 58, 443, 474
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 2 cut(s) 18, 565
Ksp22I TGATCA 1 cut(s) 831
Kzo9I GATC 3 cut(s) 369, 500, 831
LmnI GCTCC 6 cut(s) 162, 243, 520, 695, 752, 784
Lsp1109I GCAGC 1 cut(s) 654
LweI GCATC 3 cut(s) 420, 460, 723
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 298
MalI GATC 3 cut(s) 371, 502, 833
MboI GATC 3 cut(s) 369, 500, 831
MhlI GDGCHC 2 cut(s) 240, 424
MluCI AATT 4 cut(s) 258, 336, 579, 819
MlyI GAGTC 2 cut(s) 92, 485
Mph1103I ATGCAT 1 cut(s) 598
MseI TTAA 5 cut(s) 107, 303, 729, 810, 877
MslI CAYNNNNRTG 1 cut(s) 645
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 314
MvnI CGCG 1 cut(s) 721
MwoI GCNNNNNNNGC 2 cut(s) 453, 566
NciI CCSGG 1 cut(s) 314
NdeII GATC 3 cut(s) 369, 500, 831
NlaIII CATG 2 cut(s) 18, 565
NlaIV GGNNCC 1 cut(s) 317
NmeAIII GCCGAG 1 cut(s) 690
NsiI ATGCAT 1 cut(s) 598
PfeI GAWTC 1 cut(s) 494
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 1 cut(s) 669
PleI GAGTC 2 cut(s) 92, 484
PpsI GAGTC 2 cut(s) 92, 484
PsiI TTATAA 2 cut(s) 654, 702
Psp124BI GAGCTC 1 cut(s) 240
Psp1406I AACGTT 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 316
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 645
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 5 cut(s) 107, 303, 729, 810, 877
SatI GCNGC 1 cut(s) 668
Sau3AI GATC 3 cut(s) 369, 500, 831
Sau96I GGNCC 1 cut(s) 316
SchI GAGTC 2 cut(s) 92, 485
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 2 cut(s) 240, 424
SfaNI GCATC 3 cut(s) 420, 460, 723
SinI GGWCC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 645
Sse9I AATT 4 cut(s) 258, 336, 579, 819
SsiI CCGC 1 cut(s) 696
SspI AATATT 1 cut(s) 462
SspMI CTAG 1 cut(s) 119
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 2 cut(s) 310, 412
TaiI ACGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 234
TasI AATT 4 cut(s) 258, 336, 579, 819
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 5 cut(s) 107, 303, 729, 810, 877
Tru9I TTAA 5 cut(s) 107, 303, 729, 810, 877
TscAI CASTG 1 cut(s) 634
TseI GCWGC 1 cut(s) 667
TspDTI ATGAA 2 cut(s) 251, 308
TspRI CASTG 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 2 cut(s) 258, 336
XspI CTAG 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.