FvH4_6g43794

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000768
Physical Location & Seq
Reverse (-)
33863163 .. 33866933
3771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43794.t1

Sequence Viewer

Length: 783 bp
ATGAAGGGTCGTCGGACAGCGGAAGGAGGATGGGTTCGGCCGGAGGAGGCGGAGGGTCACCAGAAGGCAGAAGAGAACTGGGTTCGGTCGGAGAAGGTTGACCGGGATTGGGAGCGGTCGGATCGAGATTGGAAACGCAGTCTGGATTTGCAGCAGCGACGGCGTTGGGAAGTTGTGCTACGCTGGGACTGGGGGTTGCCGGAAGATATGAAGAAGACGGCGCTGGAAGATTTAGAGATGGCGTCGGAGGAGATGCGGACGCCGGAAGAGAGAACATCCAAGACTAGAGTAATTTTCACGGACTGCTACGGCAGCTTCAAGGATTGCCTTTGCAAAGATGTCAAAGGAATGCTGAGTCTGTACGAAGCTTCATTCCTTGGTTTTGAAGGAGAAACCCTCTTGGATGAGGCCCTCGCATTCACCAGCATGCACCTAAAGAACCTCAGCTGCAGGTTACTTGATACTCAAGGCATAGATGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGATTAGAAGCCAGATGGTACATTGAGGCATACAATAAAAGGGCAGATGCAAATCAGGTGCTACTTGAATCTACCAAGCTAGATTACAATGCGTTGGTATGGTGTTTGAGCCTCAACTCGATCAGCAATCTCAGAAAAGGGTTAACTAAAGTCGGTGCTCTTGTAAGCACTATTGATGATGTCTATGATGTTTATGGTACTTTTGATGAACTAGAGCTATTCACATCTCTTGTTGAAAGGACTACCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

261

Amino Acids

30.36

Weight (kDa)

5.11

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 99 - 168 2.6e-18 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 217 - 257 3.7e-11 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 441
AccBSI CCGCTC 1 cut(s) 115
AciI CCGC 4 cut(s) 20, 50, 115, 256
AclWI GGATC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 38
AcyI GRCGYC 2 cut(s) 242, 260
AfaI GTAC 3 cut(s) 362, 551, 730
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 4 cut(s) 319, 386, 599, 767
AloI GAACNNNNNNTCC 2 cut(s) 18, 50
AluBI AGCT 6 cut(s) 315, 368, 447, 610, 748, 780
AluI AGCT 6 cut(s) 315, 368, 447, 610, 748, 780
Alw21I GWGCWC 1 cut(s) 691
AlwI GGATC 1 cut(s) 129
AoxI GGCC 2 cut(s) 38, 408
ApeKI GCWGC 4 cut(s) 151, 154, 312, 447
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 409
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 50, 412
BarI GAAGNNNNNNTAC 2 cut(s) 162, 194
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 691
BbvCI CCTCAGC 1 cut(s) 443
BbvI GCAGC 4 cut(s) 163, 166, 324, 434
BccI CCATC 3 cut(s) 24, 232, 540
BceAI ACGGC 3 cut(s) 176, 234, 325
BcnI CCSGG 1 cut(s) 104
BfaI CTAG 3 cut(s) 285, 611, 743
BfmI CTRYAG 1 cut(s) 448
BfoI RGCGCY 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 441
BisI GCNGC 4 cut(s) 152, 155, 313, 448
BlsI GCNGC 4 cut(s) 153, 156, 314, 449
Bme1390I CCNGG 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 104
BmrI ACTGGG 2 cut(s) 88, 199
BmsI GCATC 3 cut(s) 243, 498, 568
BmuI ACTGGG 2 cut(s) 88, 199
BpiI GAAGAC 1 cut(s) 221
BplI GAGNNNNNCTC 2 cut(s) 381, 413
Bpu10I CCTNAGC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 450
BpuMI CCSGG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 582
BsaHI GRCGYC 2 cut(s) 242, 260
BsaJI CCNNGG 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 2 cut(s) 83, 194
Bse3DI GCAATG 1 cut(s) 512
Bse8I GATNNNNATC 1 cut(s) 582
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 3 cut(s) 35, 275, 409
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 512
BseMII CTCAG 3 cut(s) 344, 457, 676
BseNI ACTGG 2 cut(s) 83, 194
BseRI GAGGAG 2 cut(s) 59, 263
BseX3I CGGCCG 1 cut(s) 38
BseXI GCAGC 4 cut(s) 163, 166, 324, 434
BseYI CCCAGC 1 cut(s) 183
Bsh1285I CGRYCG 3 cut(s) 41, 89, 119
BshFI GGCC 2 cut(s) 40, 410
BsiEI CGRYCG 3 cut(s) 41, 89, 119
BsiHKAI GWGCWC 1 cut(s) 691
BsiSI CCGG 4 cut(s) 41, 103, 200, 263
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 3 cut(s) 354, 416, 531
BsnI GGCC 2 cut(s) 40, 410
Bsp1286I GDGCHC 1 cut(s) 691
Bsp143I GATC 2 cut(s) 121, 651
BspACI CCGC 4 cut(s) 20, 50, 115, 256
BspANI GGCC 2 cut(s) 40, 410
BspCNI CTCAG 3 cut(s) 345, 456, 675
BspMAI CTGCAG 1 cut(s) 452
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 1 cut(s) 129
BsrBI CCGCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 512
BsrI ACTGG 2 cut(s) 83, 194
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 2 cut(s) 121, 651
BssNI GRCGYC 2 cut(s) 242, 260
BssT1I CCWWGG 1 cut(s) 376
Bst6I CTCTTC 2 cut(s) 66, 261
BstACI GRCGYC 2 cut(s) 242, 260
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 3 cut(s) 353, 443, 662
BstEII GGTNACC 1 cut(s) 56
BstF5I GGATG 3 cut(s) 35, 275, 409
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 2 cut(s) 124, 654
BstMBI GATC 2 cut(s) 121, 651
BstMCI CGRYCG 3 cut(s) 41, 89, 119
BstMWI GCNNNNNNNGC 2 cut(s) 160, 312
BstNSI RCATGY 1 cut(s) 430
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 448
BstV1I GCAGC 4 cut(s) 163, 166, 324, 434
BstV2I GAAGAC 1 cut(s) 221
BstZI CGGCCG 1 cut(s) 38
BsuRI GGCC 2 cut(s) 40, 410
BtsCI GGATG 3 cut(s) 35, 275, 409
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 428
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 409
CseI GACGC 2 cut(s) 231, 268
Csp6I GTAC 3 cut(s) 361, 550, 729
CviAII CATG 2 cut(s) 427, 497
CviQI GTAC 3 cut(s) 361, 550, 729
DdeI CTNAG 3 cut(s) 353, 443, 662
DpnI GATC 2 cut(s) 123, 653
DpnII GATC 2 cut(s) 121, 651
EaeI YGGCCR 1 cut(s) 38
EagI CGGCCG 1 cut(s) 38
Eam1104I CTCTTC 2 cut(s) 66, 261
EarI CTCTTC 2 cut(s) 66, 261
EciI GGCGGA 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 376
Eco52I CGGCCG 1 cut(s) 38
Eco91I GGTNACC 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 2 cut(s) 430, 500
FaiI YATR 8 cut(s) 209, 428, 473, 498, 562, 631, 717, 726
FaqI GGGAC 1 cut(s) 200
FatI CATG 2 cut(s) 426, 496
Fnu4HI GCNGC 4 cut(s) 152, 155, 313, 448
FokI GGATG 3 cut(s) 42, 262, 416
Fsp4HI GCNGC 4 cut(s) 152, 155, 313, 448
FspBI CTAG 3 cut(s) 285, 611, 743
GlaI GCGC 1 cut(s) 222
GluI GCNGC 4 cut(s) 152, 155, 313, 448
GsaI CCCAGC 1 cut(s) 187
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 2 cut(s) 40, 410
HapII CCGG 4 cut(s) 41, 103, 200, 263
HgaI GACGC 2 cut(s) 231, 268
HhaI GCGC 1 cut(s) 223
Hin1I GRCGYC 2 cut(s) 242, 260
Hin1II CATG 2 cut(s) 430, 500
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HincII GTYRAC 2 cut(s) 100, 675
HindII GTYRAC 2 cut(s) 100, 675
HindIII AAGCTT 1 cut(s) 366
HinfI GANTC 3 cut(s) 355, 493, 599
HpaI GTTAAC 1 cut(s) 675
HpaII CCGG 4 cut(s) 41, 103, 200, 263
HphI GGTGA 2 cut(s) 50, 412
Hpy166II GTNNAC 2 cut(s) 100, 675
Hpy188I TCNGA 5 cut(s) 15, 91, 121, 247, 665
Hpy188III TCNNGA 2 cut(s) 125, 143
Hpy8I GTNNAC 2 cut(s) 100, 675
Hpy99I CGWCG 3 cut(s) 15, 162, 247
HpyAV CCTTC 4 cut(s) 17, 58, 88, 380
HpyCH4V TGCA 8 cut(s) 151, 333, 430, 450, 500, 517, 529, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 312
HpyF3I CTNAG 3 cut(s) 353, 443, 662
Hsp92I GRCGYC 2 cut(s) 242, 260
Hsp92II CATG 2 cut(s) 430, 500
HspAI GCGC 1 cut(s) 221
KspAI GTTAAC 1 cut(s) 675
Kzo9I GATC 2 cut(s) 121, 651
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 4 cut(s) 163, 166, 324, 434
LweI GCATC 3 cut(s) 243, 498, 568
MaeI CTAG 3 cut(s) 285, 611, 743
MaeIII GTNAC 2 cut(s) 56, 453
MalI GATC 2 cut(s) 123, 653
MbiI CCGCTC 1 cut(s) 115
MboI GATC 2 cut(s) 121, 651
MboII GAAGA 6 cut(s) 83, 215, 223, 226, 239, 278
MhlI GDGCHC 1 cut(s) 691
MluCI AATT 1 cut(s) 291
MlyI GAGTC 2 cut(s) 364, 502
MmeI TCCRAC 3 cut(s) 69, 99, 225
Mph1103I ATGCAT 1 cut(s) 502
MseI TTAA 1 cut(s) 674
MslI CAYNNNNRTG 1 cut(s) 425
MspA1I CMGCKG 3 cut(s) 20, 447, 780
MspI CCGG 4 cut(s) 41, 103, 200, 263
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 3 cut(s) 354, 416, 531
MwoI GCNNNNNNNGC 2 cut(s) 160, 312
NciI CCSGG 1 cut(s) 104
NdeII GATC 2 cut(s) 121, 651
NlaIII CATG 2 cut(s) 430, 500
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 502
NspI RCATGY 1 cut(s) 430
PaeI GCATGC 1 cut(s) 430
PctI GAATGC 3 cut(s) 354, 416, 531
PfeI GAWTC 1 cut(s) 599
PkrI GCNGC 4 cut(s) 153, 156, 314, 449
PleI GAGTC 2 cut(s) 363, 501
PpsI GAGTC 2 cut(s) 363, 501
PspEI GGTNACC 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 409
PstI CTGCAG 1 cut(s) 452
PvuII CAGCTG 2 cut(s) 447, 780
RsaI GTAC 3 cut(s) 362, 551, 730
RsaNI GTAC 3 cut(s) 361, 550, 729
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 1 cut(s) 674
SatI GCNGC 4 cut(s) 152, 155, 313, 448
Sau3AI GATC 2 cut(s) 121, 651
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 2 cut(s) 364, 502
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 691
SfaNI GCATC 3 cut(s) 243, 498, 568
SfcI CTRYAG 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
SphI GCATGC 1 cut(s) 430
Sse9I AATT 1 cut(s) 291
SsiI CCGC 4 cut(s) 20, 50, 115, 256
SspMI CTAG 3 cut(s) 285, 611, 743
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 376
TaqI TCGA 2 cut(s) 124, 650
TaqII GACCGA 1 cut(s) 75
TasI AATT 1 cut(s) 291
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 1 cut(s) 674
Tru9I TTAA 1 cut(s) 674
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 4 cut(s) 151, 154, 312, 447
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 4 cut(s) 17, 224, 360, 753
TspGWI ACGGA 1 cut(s) 314
XceI RCATGY 1 cut(s) 430
XspI CTAG 3 cut(s) 285, 611, 743
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.