Rmu_sc0012232.1_g000001

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012232.1
Physical Location & Seq
Reverse (-)
3861 .. 7678
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012232.1_g000001.1.cds

Sequence Viewer

Length: 1638 bp
atgtctaaccaatgcttagcgagcagcggacgcactgctgctcaaacttcacatctggatgttaaaagactaacagcaaattacaagccaagtatttggagttgcgattttcttcagtcattacagattgatgatcataatcataaagaagtctacggagataataggtggaagttgatggaggaggatctgaaaaatatgattgatgcagagtcactagagactacacttgaattgattgatgacatccaacaattagacgaggatactccaagtcttcatctcactgctctaagcttcagggtcctcagacatcatgggtttcaagtctcccaagatgttttcaaatttttcatggattgtgacggcagctttaaggattgccattgcaaagatgtcaaaggcatgctaagtctgtatgaagcttcattccttggtattgaaggagaaaccctcttggatgaggctcttgcattcactagcctgcacctaaagaacctcagtagattgcatgttactcaagacaaaggtgtattagagcaagtgagtcatgcattggagatgccattgcaccacagaatgcaaagattagaagctagatggtttattgaggtatacagtaaaaaggcatatgaaaatcaggtgctacttgaatttgccaagctagattacaatatggtgcaacaaacataccaaagagattttaaagatatttcaaggtggtggaaggatacggggttagcaaagaagttgtccttcagcagagatagactgatggagttgttcttttggtcagttggtatagtgtctgaacctcaattcagcgatgttaggaaagggataactaaagtcagtgctctaataacgactattgatgatgtctatgatgtttatggtactttggatgaactacagttattcacatctgctgttgaaagatggggtgtgaatgctgtggaaattttttcagactaccagctgaagctctgtttccttgctctctataacactgtgaatgaaatgacttacgaaactttgaaggagcaaggagtgaacgttcttccttacctgacaaaagcttgggctaatatgtgcaaatcttggttaacggaggcagagtggcgtcacaacaagtacacacctacatttgacgaatatcttgccaatgcatggatatcagtatccggggtggtcattctggtccatacctactttctactcaatcaaaatatctcagatgaagcacttaaatgcttagagaatcaccatgatctcttgcgttggccgtctgttatttttcggctcttaaatgatttggctacttcgaaggcagaactagagagaggtgaaactgcaacttcaatatccagcatcaaacgtggtggtgttgtttctgatgaggaatctgctcacaaatatattagtaatttgattgagagtacttggaagaagatgaacaaagatggactaatatttggtgccaatagtgcttcttctccattcacaaaagaatttgtagcagcagcaacaaaccttgctcgaattgcccaatgtatctaccaatatggagacgggattggtgccccggataaaagagtaaagaatcggatcctagcagtgattgtacaacccgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

545

Amino Acids

62.51

Weight (kDa)

5.56

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1478, 1580
AccB7I CCANNNNNTGG 1 cut(s) 1170
AccI GTMKAC 2 cut(s) 153, 615
AciI CCGC 1 cut(s) 27
AclI AACGTT 1 cut(s) 1056
AclWI GGATC 3 cut(s) 195, 1603, 1616
AcoI YGGCCR 1 cut(s) 1283
AcsI RAATTY 4 cut(s) 347, 653, 960, 1511
AcuI CTGAAG 4 cut(s) 98, 283, 742, 1001
AcyI GRCGYC 1 cut(s) 1123
AfaI GTAC 4 cut(s) 898, 1136, 1441, 1626
AfiI CCNNNNNNNGG 1 cut(s) 1170
AgsI TTSAA 9 cut(s) 233, 326, 346, 443, 653, 717, 935, 1039, 1362
AloI GAACNNNNNNTCC 2 cut(s) 1041, 1073
AluBI AGCT 8 cut(s) 297, 372, 425, 596, 664, 979, 985, 1079
AluI AGCT 8 cut(s) 297, 372, 425, 596, 664, 979, 985, 1079
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 3 cut(s) 215, 334, 1563
AlwI GGATC 3 cut(s) 195, 1603, 1616
AoxI GGCC 1 cut(s) 1283
ApeKI GCWGC 5 cut(s) 24, 38, 369, 1520, 1523
ApoI RAATTY 4 cut(s) 347, 653, 960, 1511
ArsI GACNNNNNNTTYG 2 cut(s) 737, 769
AspS9I GGNCC 2 cut(s) 304, 1201
AsuC2I CCSGG 2 cut(s) 1186, 1586
AsuHPI GGTGA 2 cut(s) 1256, 1358
AsuII TTCGAA 1 cut(s) 1325
AvaII GGWCC 2 cut(s) 304, 1201
BaeGI GKGCMC 1 cut(s) 1585
BamHI GGATCC 1 cut(s) 1608
BanI GGYRCC 2 cut(s) 1478, 1580
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 859
BbvI GCAGC 5 cut(s) 25, 36, 381, 1532, 1535
BccI CCATC 5 cut(s) 172, 594, 769, 933, 1457
BceAI ACGGC 2 cut(s) 382, 1270
BcgI CGANNNNNNTGC 2 cut(s) 1142, 1176
BciVI GTATCC 3 cut(s) 259, 724, 1192
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 2 cut(s) 1186, 1586
BcoDI GTCTC 3 cut(s) 215, 334, 1563
BfaI CTAG 6 cut(s) 218, 480, 597, 665, 1337, 1613
BfmI CTRYAG 1 cut(s) 911
BfuI GTATCC 3 cut(s) 259, 724, 1192
BisI GCNGC 5 cut(s) 25, 39, 370, 1521, 1524
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 5 cut(s) 26, 40, 371, 1522, 1525
BmcAI AGTACT 1 cut(s) 1441
Bme1390I CCNGG 2 cut(s) 1186, 1586
Bme18I GGWCC 2 cut(s) 304, 1201
BmgT120I GGNCC 2 cut(s) 304, 1201
BmiI GGNNCC 4 cut(s) 305, 1480, 1582, 1610
BmrFI CCNGG 2 cut(s) 1186, 1586
BmsI GCATC 3 cut(s) 196, 552, 1380
BpiI GAAGAC 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 438, 470
Bpu1102I GCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 1325
BpuEI CTTGAG 1 cut(s) 504
BpuMI CCSGG 2 cut(s) 1186, 1586
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 1123
BsaJI CCNNGG 3 cut(s) 433, 1185, 1584
BsaXI ACNNNNNCTCC 4 cut(s) 1041, 1071, 1103, 1133
Bsc4I CCNNNNNNNGG 1 cut(s) 1170
Bse3DI GCAATG 2 cut(s) 385, 566
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 433, 1185, 1584
BseGI GGATG 4 cut(s) 64, 246, 466, 910
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 1170
BseMI GCAATG 2 cut(s) 385, 566
BseMII CTCAG 3 cut(s) 322, 514, 1248
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 1585
BseXI GCAGC 5 cut(s) 25, 36, 381, 1532, 1535
BsgI GTGCAG 1 cut(s) 470
BshFI GGCC 1 cut(s) 1285
BshNI GGYRCC 2 cut(s) 1478, 1580
BsiHKAI GWGCWC 1 cut(s) 859
BsiSI CCGG 2 cut(s) 1185, 1586
BslI CCNNNNNNNGG 1 cut(s) 1170
BsmAI GTCTC 3 cut(s) 215, 334, 1563
BsmBI CGTCTC 1 cut(s) 1563
BsmI GAATGC 3 cut(s) 473, 585, 955
BsnI GGCC 1 cut(s) 1285
Bsp119I TTCGAA 1 cut(s) 1325
Bsp1286I GDGCHC 2 cut(s) 859, 1585
Bsp1407I TGTACA 1 cut(s) 1624
Bsp143I GATC 4 cut(s) 133, 187, 1270, 1608
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 1285
BspCNI CTCAG 3 cut(s) 321, 513, 1247
BspLI GGNNCC 4 cut(s) 305, 1480, 1582, 1610
BspPI GGATC 3 cut(s) 195, 1603, 1616
BspT104I TTCGAA 1 cut(s) 1325
BspT107I GGYRCC 2 cut(s) 1478, 1580
BsrDI GCAATG 2 cut(s) 385, 566
BsrGI TGTACA 1 cut(s) 1624
BssECI CCNNGG 3 cut(s) 433, 1185, 1584
BssMI GATC 4 cut(s) 133, 187, 1270, 1608
BssNAI GTATAC 1 cut(s) 616
BssNI GRCGYC 1 cut(s) 1123
BssT1I CCWWGG 1 cut(s) 433
Bst1107I GTATAC 1 cut(s) 616
Bst4CI ACNGT 3 cut(s) 620, 915, 1012
BstACI GRCGYC 1 cut(s) 1123
BstAUI TGTACA 1 cut(s) 1624
BstBI TTCGAA 1 cut(s) 1325
BstC8I GCNNGC 3 cut(s) 22, 407, 485
BstDEI CTNAG 7 cut(s) 16, 293, 308, 410, 500, 1234, 1255
BstF5I GGATG 4 cut(s) 64, 246, 466, 910
BstKTI GATC 4 cut(s) 136, 190, 1273, 1611
BstMAI GTCTC 3 cut(s) 215, 334, 1563
BstMBI GATC 4 cut(s) 133, 187, 1270, 1608
BstMWI GCNNNNNNNGC 4 cut(s) 21, 30, 1487, 1544
BstNSI RCATGY 2 cut(s) 409, 515
BstSCI CCNGG 2 cut(s) 1184, 1584
BstSFI CTRYAG 1 cut(s) 911
BstSLI GKGCMC 1 cut(s) 1585
BstV1I GCAGC 5 cut(s) 25, 36, 381, 1532, 1535
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 2 cut(s) 187, 1608
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 2 cut(s) 187, 1608
BstZ17I GTATAC 1 cut(s) 616
BsuI GTATCC 3 cut(s) 259, 724, 1192
BsuRI GGCC 1 cut(s) 1285
BtgZI GCGATG 1 cut(s) 840
BtsCI GGATG 4 cut(s) 64, 246, 466, 910
BtsI GCAGTG 3 cut(s) 33, 285, 1623
BtsIMutI CAGTG 5 cut(s) 33, 285, 859, 1008, 1623
Cac8I GCNNGC 3 cut(s) 22, 407, 485
Cfr13I GGNCC 2 cut(s) 304, 1201
CseI GACGC 2 cut(s) 39, 1112
Csp6I GTAC 4 cut(s) 897, 1135, 1440, 1625
CspCI CAANNNNNGTGG 2 cut(s) 1363, 1398
CviAII CATG 7 cut(s) 317, 355, 406, 512, 551, 1170, 1268
CviQI GTAC 4 cut(s) 897, 1135, 1440, 1625
DdeI CTNAG 7 cut(s) 16, 293, 308, 410, 500, 1234, 1255
DpnI GATC 4 cut(s) 135, 189, 1272, 1610
DpnII GATC 4 cut(s) 133, 187, 1270, 1608
DraI TTTAAA 1 cut(s) 706
EaeI YGGCCR 1 cut(s) 1283
Eco130I CCWWGG 1 cut(s) 433
Eco32I GATATC 1 cut(s) 1176
Eco47I GGWCC 2 cut(s) 304, 1201
Eco57I CTGAAG 4 cut(s) 98, 283, 742, 1001
EcoO109I RGGNCCY 1 cut(s) 304
EcoRV GATATC 1 cut(s) 1176
EcoT14I CCWWGG 1 cut(s) 433
EcoT22I ATGCAT 2 cut(s) 556, 1171
ErhI CCWWGG 1 cut(s) 433
Esp3I CGTCTC 1 cut(s) 1563
FaeI CATG 7 cut(s) 320, 358, 409, 515, 554, 1173, 1271
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FatI CATG 7 cut(s) 316, 354, 405, 511, 550, 1169, 1267
FauNDI CATATG 1 cut(s) 631
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 2 cut(s) 153, 615
Fnu4HI GCNGC 5 cut(s) 25, 39, 370, 1521, 1524
FokI GGATG 4 cut(s) 71, 233, 473, 917
Fsp4HI GCNGC 5 cut(s) 25, 39, 370, 1521, 1524
FspBI CTAG 6 cut(s) 218, 480, 597, 665, 1337, 1613
GluI GCNGC 5 cut(s) 25, 39, 370, 1521, 1524
HaeIII GGCC 1 cut(s) 1285
HapII CCGG 2 cut(s) 1185, 1586
HgaI GACGC 2 cut(s) 39, 1112
Hin1I GRCGYC 1 cut(s) 1123
Hin1II CATG 7 cut(s) 320, 358, 409, 515, 554, 1173, 1271
HincII GTYRAC 1 cut(s) 1107
HindII GTYRAC 1 cut(s) 1107
HindIII AAGCTT 3 cut(s) 295, 423, 1077
HinfI GANTC 5 cut(s) 212, 547, 1261, 1403, 1603
HpaI GTTAAC 1 cut(s) 1107
HpaII CCGG 2 cut(s) 1185, 1586
HphI GGTGA 2 cut(s) 1256, 1358
Hpy166II GTNNAC 5 cut(s) 154, 616, 1054, 1107, 1137
Hpy188I TCNGA 7 cut(s) 192, 311, 811, 970, 1237, 1396, 1608
Hpy188III TCNNGA 2 cut(s) 56, 521
Hpy8I GTNNAC 5 cut(s) 154, 616, 1054, 1107, 1137
HpyAV CCTTC 5 cut(s) 437, 721, 766, 1033, 1321
HpyCH4III ACNGT 3 cut(s) 620, 915, 1012
HpyCH4IV ACGT 2 cut(s) 1056, 1378
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 30, 1487, 1544
HpyF3I CTNAG 7 cut(s) 16, 293, 308, 410, 500, 1234, 1255
HpySE526I ACGT 2 cut(s) 1056, 1378
Hsp92I GRCGYC 1 cut(s) 1123
Hsp92II CATG 7 cut(s) 320, 358, 409, 515, 554, 1173, 1271
Ksp22I TGATCA 1 cut(s) 133
KspAI GTTAAC 1 cut(s) 1107
Kzo9I GATC 4 cut(s) 133, 187, 1270, 1608
LmnI GCTCC 1 cut(s) 1042
Lsp1109I GCAGC 5 cut(s) 25, 36, 381, 1532, 1535
LweI GCATC 3 cut(s) 196, 552, 1380
MaeI CTAG 6 cut(s) 218, 480, 597, 665, 1337, 1613
MaeII ACGT 2 cut(s) 1056, 1378
MaeIII GTNAC 4 cut(s) 213, 362, 514, 1124
MalI GATC 4 cut(s) 135, 189, 1272, 1610
MboI GATC 4 cut(s) 133, 187, 1270, 1608
MboII GAAGA 6 cut(s) 104, 269, 1052, 1459, 1462, 1485
MflI RGATCY 2 cut(s) 187, 1608
MhlI GDGCHC 2 cut(s) 859, 1585
MlyI GAGTC 2 cut(s) 221, 556
MmeI TCCRAC 1 cut(s) 274
Mph1103I ATGCAT 2 cut(s) 556, 1171
MseI TTAA 6 cut(s) 63, 375, 705, 1106, 1248, 1307
MslI CAYNNNNRTG 2 cut(s) 57, 1249
MspA1I CMGCKG 2 cut(s) 27, 979
MspI CCGG 2 cut(s) 1185, 1586
MspR9I CCNGG 2 cut(s) 1186, 1586
Mva1269I GAATGC 3 cut(s) 473, 585, 955
MwoI GCNNNNNNNGC 4 cut(s) 21, 30, 1487, 1544
NciI CCSGG 2 cut(s) 1186, 1586
NdeI CATATG 1 cut(s) 631
NdeII GATC 4 cut(s) 133, 187, 1270, 1608
NlaIII CATG 7 cut(s) 320, 358, 409, 515, 554, 1173, 1271
NlaIV GGNNCC 4 cut(s) 305, 1480, 1582, 1610
NmuCI GTSAC 3 cut(s) 213, 362, 1124
NsiI ATGCAT 2 cut(s) 556, 1171
NspI RCATGY 2 cut(s) 409, 515
NspV TTCGAA 1 cut(s) 1325
PaeI GCATGC 1 cut(s) 409
PctI GAATGC 3 cut(s) 473, 585, 955
PfeI GAWTC 3 cut(s) 1261, 1403, 1603
PflMI CCANNNNNTGG 1 cut(s) 1170
PkrI GCNGC 5 cut(s) 26, 40, 371, 1522, 1525
PleI GAGTC 2 cut(s) 220, 555
PpsI GAGTC 2 cut(s) 220, 555
PpuMI RGGWCCY 1 cut(s) 304
Psp1406I AACGTT 1 cut(s) 1056
Psp5II RGGWCCY 1 cut(s) 304
PspN4I GGNNCC 4 cut(s) 305, 1480, 1582, 1610
PspPI GGNCC 2 cut(s) 304, 1201
PspPPI RGGWCCY 1 cut(s) 304
PsuI RGATCY 2 cut(s) 187, 1608
PvuII CAGCTG 1 cut(s) 979
RsaI GTAC 4 cut(s) 898, 1136, 1441, 1626
RsaNI GTAC 4 cut(s) 897, 1135, 1440, 1625
RseI CAYNNNNRTG 2 cut(s) 57, 1249
SaqAI TTAA 6 cut(s) 63, 375, 705, 1106, 1248, 1307
SatI GCNGC 5 cut(s) 25, 39, 370, 1521, 1524
Sau3AI GATC 4 cut(s) 133, 187, 1270, 1608
Sau96I GGNCC 2 cut(s) 304, 1201
ScaI AGTACT 1 cut(s) 1441
SchI GAGTC 2 cut(s) 221, 556
ScrFI CCNGG 2 cut(s) 1186, 1586
SduI GDGCHC 2 cut(s) 859, 1585
SfaNI GCATC 3 cut(s) 196, 552, 1380
SfcI CTRYAG 1 cut(s) 911
SfuI TTCGAA 1 cut(s) 1325
SinI GGWCC 2 cut(s) 304, 1201
SmiMI CAYNNNNRTG 2 cut(s) 57, 1249
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
SphI GCATGC 1 cut(s) 409
SsiI CCGC 1 cut(s) 27
SspI AATATT 1 cut(s) 1473
SspMI CTAG 6 cut(s) 218, 480, 597, 665, 1337, 1613
StyD4I CCNGG 2 cut(s) 1184, 1584
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 3 cut(s) 620, 915, 1012
TaiI ACGT 2 cut(s) 1059, 1381
TaqI TCGA 2 cut(s) 1325, 1540
TatI WGTACW 3 cut(s) 1134, 1439, 1624
TfiI GAWTC 3 cut(s) 1261, 1403, 1603
Tru1I TTAA 6 cut(s) 63, 375, 705, 1106, 1248, 1307
Tru9I TTAA 6 cut(s) 63, 375, 705, 1106, 1248, 1307
TscAI CASTG 5 cut(s) 40, 292, 859, 1015, 1623
TseFI GTSAC 3 cut(s) 213, 362, 1124
TseI GCWGC 5 cut(s) 24, 38, 369, 1520, 1523
Tsp45I GTSAC 3 cut(s) 213, 362, 1124
TspDTI ATGAA 9 cut(s) 269, 343, 417, 435, 648, 921, 1032, 1254, 1469
TspGWI ACGGA 2 cut(s) 171, 1124
TspRI CASTG 5 cut(s) 40, 292, 859, 1015, 1623
Van91I CCANNNNNTGG 1 cut(s) 1170
VpaK11BI GGWCC 2 cut(s) 304, 1201
XapI RAATTY 4 cut(s) 347, 653, 960, 1511
XceI RCATGY 2 cut(s) 409, 515
XmiI GTMKAC 2 cut(s) 153, 615
XspI CTAG 6 cut(s) 218, 480, 597, 665, 1337, 1613
ZrmI AGTACT 1 cut(s) 1441
Zsp2I ATGCAT 2 cut(s) 556, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.