Rh6AG054500

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000768
Physical Location & Seq
Forward (+)
8038688 .. 8048084
9397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG054500.1

Sequence Viewer

Length: 1710 bp
ATGTCTACCGAACGCTTAGCTACCGCTGCTCGAACTTCACATCTGGATGGTAAAAGATTGACAGCAAATTACAATCCAAACATGTGGAGTTATGATTTTATTCAGTCGTTACAGATTGATGATCATAATCATGAAGAAGACAAAGATAATAGGTGGAAGTTGTTGGAGGAAGATGTGAAAAATATGATTGATTATGATAATGATGCGCAATCGCTAGTCACTACACTTGAATTAATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGCCAATATTACAGAAGCCCTTGATAGAGTTTTGAAGAATCTTGACCAAATAACAAACGAGGATACTCCAAGTCTCCACCTCAATGCTCTCAGCTTCAGGCTCCTTAGACAGCATGGGTTTCAAGTCTCCCAAGATGTCTTCAAAATTTTCATGGACTACAATGGCAGCTTTAAAGATTGCCTTTGCAAAGATGTCAAAGGAATGTTAAGTCTGTACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAGCATGCATCTAAAGAACCTCAACAGATTCCATGTTACTGAAGGCAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAAATGCCATTGCACCACAGAATGCAAAGACTAGAAGCTAGATGGTATATTGAGTCATACAGTAAAAAGGCAAATGCAAATCAGGTGCTACTTGAGTTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGACCTTAAAGACATTTCAAGGTGGTGGAAGGATACGGGGTTAGCAAAGAAGTTGTCCTTCAGCAGAGACAGACTAATGGAGTTGTTCTTTTGGTCAGTTGGTATAGTGTCTGAACCCCAATTCAGCAATCTTAGAAAAGAAATAACTAAAGTCAGTGCTCTAATAACGACTATTGATGATGTCTATGATGTTTATGGTACTTTGGATGAACTGGAGCTATTCACATCAATTGTTGAAAGATGGGATGTGAATGCTGTGGAAACTCTTTCAGACTACCAGTTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAATTGACTTATGAAACTTTGAAAGAGCAAGGAGTGAACGTCCTTCCTTACTTGACAAAAGCTTGGGCTGATATGTGCAAATCTTGGTTAACGGAGGCAGAGTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCAGTGTCCGGGGTGGTCATTCTAGTCCATACCTACTTTCTACTGAACCAAAATATCTCAAATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCAAAGGCAGAATTAGAGAGTGGTGAAACTGCAACTTCAATATCCTGCATCATTTGTGGTGGTGTTGTTTCTGATGAAGAATCTGCTTTCAAATATATTAGTAATTTGATTAAGAATAGTTGGAAGAAGATGAATAAAGATGGACTACTATTTGGTGTTAGTAGTGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAGCAACAAACCTTGCTCGGATTGCCCAATGCATTTACCAATATGGAGACGGGATTGGTGCCCCAAACAAAAGAGTAAAGAATCGGATCCTAGCAGTGATAGTACAACCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

569

Amino Acids

65.38

Weight (kDa)

5.38

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 28 - 210 4.6e-51 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 267 - 508 1.2e-85 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 307 - 508 1.9e-55 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 1652
AccB7I CCANNNNNTGG 1 cut(s) 1242
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 24
AclWI GGATC 2 cut(s) 1675, 1688
AcoI YGGCCR 1 cut(s) 1355
AcsI RAATTY 2 cut(s) 420, 1583
AcuI CTGAAG 3 cut(s) 355, 612, 814
AcyI GRCGYC 1 cut(s) 1195
AfaI GTAC 4 cut(s) 491, 970, 1208, 1698
AfiI CCNNNNNNNGG 2 cut(s) 274, 1242
AflIII ACRYGT 1 cut(s) 81
AluBI AGCT 9 cut(s) 20, 369, 444, 497, 668, 736, 988, 1057, 1151
AluI AGCT 9 cut(s) 20, 369, 444, 497, 668, 736, 988, 1057, 1151
Alw21I GWGCWC 1 cut(s) 931
Alw26I GTCTC 6 cut(s) 353, 406, 765, 831, 1365, 1635
AlwI GGATC 2 cut(s) 1675, 1688
AoxI GGCC 3 cut(s) 276, 537, 1355
ApeKI GCWGC 4 cut(s) 26, 441, 1592, 1595
ApoI RAATTY 2 cut(s) 420, 1583
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
AseI ATTAAT 1 cut(s) 233
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 538
AsuC2I CCSGG 1 cut(s) 1258
AsuHPI GGTGA 3 cut(s) 541, 1328, 1430
BaeGI GKGCMC 1 cut(s) 1657
BamHI GGATCC 1 cut(s) 1680
BanI GGYRCC 1 cut(s) 1652
BarI GAAGNNNNNNTAC 2 cut(s) 1549, 1581
BbsI GAAGAC 2 cut(s) 144, 406
Bbv12I GWGCWC 1 cut(s) 931
BbvI GCAGC 4 cut(s) 13, 453, 1604, 1607
BccI CCATC 4 cut(s) 41, 666, 1005, 1529
BceAI ACGGC 1 cut(s) 1342
BciVI GTATCC 2 cut(s) 331, 796
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 1258
BcoDI GTCTC 6 cut(s) 353, 406, 765, 831, 1365, 1635
BfaI CTAG 6 cut(s) 215, 662, 669, 737, 1271, 1685
BfuI GTATCC 2 cut(s) 331, 796
BisI GCNGC 4 cut(s) 27, 442, 1593, 1596
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 4 cut(s) 28, 443, 1594, 1597
Bme1390I CCNGG 1 cut(s) 1258
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 3 cut(s) 377, 1654, 1682
BmrFI CCNGG 1 cut(s) 1258
BmsI GCATC 3 cut(s) 193, 568, 1452
BpiI GAAGAC 2 cut(s) 144, 406
BplI GAGNNNNNCTC 2 cut(s) 510, 542
BpmI CTGGAG 1 cut(s) 1004
Bpu1102I GCTNAGC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 743
BpuMI CCSGG 1 cut(s) 1258
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 1195
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 2 cut(s) 505, 1257
BsaXI ACNNNNNCTCC 4 cut(s) 1113, 1143, 1175, 1205
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 1242
Bse1I ACTGG 2 cut(s) 987, 1048
Bse3DI GCAATG 1 cut(s) 638
Bse8I GATNNNNATC 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 505, 1257
BseGI GGATG 5 cut(s) 52, 243, 538, 982, 1021
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 274, 1242
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 1 cut(s) 379
BseNI ACTGG 2 cut(s) 987, 1048
BseSI GKGCMC 1 cut(s) 1657
BseXI GCAGC 4 cut(s) 13, 453, 1604, 1607
BshFI GGCC 3 cut(s) 278, 539, 1357
BshNI GGYRCC 1 cut(s) 1652
BsiHKAI GWGCWC 1 cut(s) 931
BsiSI CCGG 1 cut(s) 1257
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 2 cut(s) 274, 1242
BsmAI GTCTC 6 cut(s) 353, 406, 765, 831, 1365, 1635
BsmBI CGTCTC 2 cut(s) 1365, 1635
BsmFI GGGAC 1 cut(s) 276
BsmI GAATGC 3 cut(s) 545, 657, 1027
BsnI GGCC 3 cut(s) 278, 539, 1357
Bso31I GGTCTC 1 cut(s) 765
Bsp1286I GDGCHC 2 cut(s) 931, 1657
Bsp143I GATC 3 cut(s) 121, 1342, 1680
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 24
BspANI GGCC 3 cut(s) 278, 539, 1357
BspCNI CTCAG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 377, 1654, 1682
BspPI GGATC 2 cut(s) 1675, 1688
BspT107I GGYRCC 1 cut(s) 1652
BspTNI GGTCTC 1 cut(s) 765
BsrDI GCAATG 1 cut(s) 638
BsrI ACTGG 2 cut(s) 987, 1048
BssECI CCNNGG 2 cut(s) 505, 1257
BssMI GATC 3 cut(s) 121, 1342, 1680
BssNI GRCGYC 1 cut(s) 1195
BssT1I CCWWGG 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 692, 1084
BstACI GRCGYC 1 cut(s) 1195
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 5 cut(s) 16, 365, 380, 902, 1327
BstF5I GGATG 5 cut(s) 52, 243, 538, 982, 1021
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 124, 1345, 1683
BstMAI GTCTC 6 cut(s) 353, 406, 765, 831, 1365, 1635
BstMBI GATC 3 cut(s) 121, 1342, 1680
BstMWI GCNNNNNNNGC 2 cut(s) 26, 1616
BstNSI RCATGY 2 cut(s) 85, 559
BstSCI CCNGG 1 cut(s) 1256
BstSLI GKGCMC 1 cut(s) 1657
BstV1I GCAGC 4 cut(s) 13, 453, 1604, 1607
BstV2I GAAGAC 2 cut(s) 144, 406
BstX2I RGATCY 1 cut(s) 1680
BstXI CCANNNNNNTGG 1 cut(s) 84
BstYI RGATCY 1 cut(s) 1680
BsuI GTATCC 2 cut(s) 331, 796
BsuRI GGCC 3 cut(s) 278, 539, 1357
BtsCI GGATG 5 cut(s) 52, 243, 538, 982, 1021
BtsI GCAGTG 1 cut(s) 1695
BtsIMutI CAGTG 4 cut(s) 931, 1080, 1257, 1695
Cac8I GCNNGC 1 cut(s) 557
CciI TCATGA 1 cut(s) 130
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 538
CseI GACGC 1 cut(s) 1184
Csp6I GTAC 4 cut(s) 490, 969, 1207, 1697
CviAII CATG 9 cut(s) 82, 131, 389, 427, 556, 584, 623, 1242, 1340
CviQI GTAC 4 cut(s) 490, 969, 1207, 1697
DdeI CTNAG 5 cut(s) 16, 365, 380, 902, 1327
DpnI GATC 3 cut(s) 123, 1344, 1682
DpnII GATC 3 cut(s) 121, 1342, 1680
DraI TTTAAA 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 1355
Eco130I CCWWGG 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 765
Eco32I GATATC 1 cut(s) 1248
Eco57I CTGAAG 3 cut(s) 355, 612, 814
EcoO109I RGGNCCY 1 cut(s) 538
EcoRV GATATC 1 cut(s) 1248
EcoT14I CCWWGG 1 cut(s) 505
EcoT22I ATGCAT 4 cut(s) 561, 628, 1243, 1628
ErhI CCWWGG 1 cut(s) 505
Esp3I CGTCTC 2 cut(s) 1365, 1635
FaeI CATG 9 cut(s) 85, 134, 392, 430, 559, 587, 626, 1245, 1343
FalI AAGNNNNNCTT 6 cut(s) 441, 473, 812, 844, 1215, 1247
FaqI GGGAC 1 cut(s) 276
FatI CATG 9 cut(s) 81, 130, 388, 426, 555, 583, 622, 1241, 1339
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 27, 442, 1593, 1596
FokI GGATG 5 cut(s) 59, 230, 545, 989, 1028
Fsp4HI GCNGC 4 cut(s) 27, 442, 1593, 1596
FspBI CTAG 6 cut(s) 215, 662, 669, 737, 1271, 1685
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 207
GluI GCNGC 4 cut(s) 27, 442, 1593, 1596
GsuI CTGGAG 1 cut(s) 1004
HaeIII GGCC 3 cut(s) 278, 539, 1357
HapII CCGG 1 cut(s) 1257
HgaI GACGC 1 cut(s) 1184
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 1195
Hin1II CATG 9 cut(s) 85, 134, 392, 430, 559, 587, 626, 1245, 1343
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 1179
HindII GTYRAC 1 cut(s) 1179
HindIII AAGCTT 2 cut(s) 495, 1149
HinfI GANTC 8 cut(s) 270, 313, 579, 619, 683, 1333, 1475, 1675
HpaI GTTAAC 1 cut(s) 1179
HpaII CCGG 1 cut(s) 1257
HphI GGTGA 3 cut(s) 541, 1328, 1430
Hpy166II GTNNAC 4 cut(s) 6, 1126, 1179, 1209
Hpy188I TCNGA 5 cut(s) 883, 1042, 1468, 1614, 1680
Hpy188III TCNNGA 3 cut(s) 44, 131, 317
Hpy8I GTNNAC 4 cut(s) 6, 1126, 1179, 1209
HpyAV CCTTC 5 cut(s) 509, 587, 793, 838, 1142
HpyCH4III ACNGT 2 cut(s) 692, 1084
HpyCH4IV ACGT 1 cut(s) 1128
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 1616
HpyF3I CTNAG 5 cut(s) 16, 365, 380, 902, 1327
HpySE526I ACGT 1 cut(s) 1128
Hsp92I GRCGYC 1 cut(s) 1195
Hsp92II CATG 9 cut(s) 85, 134, 392, 430, 559, 587, 626, 1245, 1343
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 121
KspAI GTTAAC 1 cut(s) 1179
Kzo9I GATC 3 cut(s) 121, 1342, 1680
LmnI GCTCC 2 cut(s) 381, 985
LpnPI CCDG 8 cut(s) 29, 358, 565, 698, 968, 1061, 1270, 1453
Lsp1109I GCAGC 4 cut(s) 13, 453, 1604, 1607
LweI GCATC 3 cut(s) 193, 568, 1452
MaeI CTAG 6 cut(s) 215, 662, 669, 737, 1271, 1685
MaeII ACGT 1 cut(s) 1128
MaeIII GTNAC 5 cut(s) 108, 217, 586, 1196, 1390
MalI GATC 3 cut(s) 123, 1344, 1682
MboI GATC 3 cut(s) 121, 1342, 1680
MfeI CAATTG 1 cut(s) 999
MflI RGATCY 1 cut(s) 1680
MhlI GDGCHC 2 cut(s) 931, 1657
MlyI GAGTC 2 cut(s) 628, 692
MmeI TCCRAC 3 cut(s) 144, 271, 1496
MnlI CCTC 8 cut(s) 160, 268, 328, 365, 529, 536, 581, 1177
Mph1103I ATGCAT 4 cut(s) 561, 628, 1243, 1628
MseI TTAA 8 cut(s) 233, 447, 482, 777, 1178, 1320, 1506, 1708
MslI CAYNNNNRTG 5 cut(s) 45, 129, 357, 554, 1321
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 1257
MspR9I CCNGG 1 cut(s) 1258
MunI CAATTG 1 cut(s) 999
Mva1269I GAATGC 3 cut(s) 545, 657, 1027
MwoI GCNNNNNNNGC 2 cut(s) 26, 1616
NciI CCSGG 1 cut(s) 1258
NdeII GATC 3 cut(s) 121, 1342, 1680
NlaIII CATG 9 cut(s) 85, 134, 392, 430, 559, 587, 626, 1245, 1343
NlaIV GGNNCC 3 cut(s) 377, 1654, 1682
NmuCI GTSAC 2 cut(s) 217, 1196
NsbI TGCGCA 1 cut(s) 207
NsiI ATGCAT 4 cut(s) 561, 628, 1243, 1628
NspI RCATGY 2 cut(s) 85, 559
PaeI GCATGC 1 cut(s) 559
PagI TCATGA 1 cut(s) 130
PciI ACATGT 1 cut(s) 81
PctI GAATGC 3 cut(s) 545, 657, 1027
PfeI GAWTC 6 cut(s) 270, 313, 579, 1333, 1475, 1675
PflMI CCANNNNNTGG 1 cut(s) 1242
PkrI GCNGC 4 cut(s) 28, 443, 1594, 1597
PleI GAGTC 2 cut(s) 627, 691
PpsI GAGTC 2 cut(s) 627, 691
PscI ACATGT 1 cut(s) 81
PshBI ATTAAT 1 cut(s) 233
PspN4I GGNNCC 3 cut(s) 377, 1654, 1682
PspPI GGNCC 1 cut(s) 538
PsuI RGATCY 1 cut(s) 1680
RsaI GTAC 4 cut(s) 491, 970, 1208, 1698
RsaNI GTAC 4 cut(s) 490, 969, 1207, 1697
RseI CAYNNNNRTG 5 cut(s) 45, 129, 357, 554, 1321
SaqAI TTAA 8 cut(s) 233, 447, 482, 777, 1178, 1320, 1506, 1708
SatI GCNGC 4 cut(s) 27, 442, 1593, 1596
Sau3AI GATC 3 cut(s) 121, 1342, 1680
Sau96I GGNCC 1 cut(s) 538
SchI GAGTC 2 cut(s) 628, 692
ScrFI CCNGG 1 cut(s) 1258
SduI GDGCHC 2 cut(s) 931, 1657
SfaNI GCATC 3 cut(s) 193, 568, 1452
SmiMI CAYNNNNRTG 5 cut(s) 45, 129, 357, 554, 1321
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
SphI GCATGC 1 cut(s) 559
SsiI CCGC 1 cut(s) 24
SspI AATATT 1 cut(s) 283
SspMI CTAG 6 cut(s) 215, 662, 669, 737, 1271, 1685
StyD4I CCNGG 1 cut(s) 1256
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 2 cut(s) 692, 1084
TaiI ACGT 1 cut(s) 1131
TaqI TCGA 2 cut(s) 31, 273
TatI WGTACW 2 cut(s) 1206, 1696
TfiI GAWTC 6 cut(s) 270, 313, 579, 1333, 1475, 1675
Tru1I TTAA 8 cut(s) 233, 447, 482, 777, 1178, 1320, 1506, 1708
Tru9I TTAA 8 cut(s) 233, 447, 482, 777, 1178, 1320, 1506, 1708
TscAI CASTG 4 cut(s) 931, 1087, 1257, 1695
TseFI GTSAC 2 cut(s) 217, 1196
TseI GCWGC 4 cut(s) 26, 441, 1592, 1595
Tsp45I GTSAC 2 cut(s) 217, 1196
TspDTI ATGAA 9 cut(s) 147, 415, 489, 993, 1104, 1116, 1326, 1485, 1541
TspGWI ACGGA 1 cut(s) 1196
TspRI CASTG 4 cut(s) 931, 1087, 1257, 1695
Van91I CCANNNNNTGG 1 cut(s) 1242
VspI ATTAAT 1 cut(s) 233
XapI RAATTY 2 cut(s) 420, 1583
XceI RCATGY 2 cut(s) 85, 559
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 6 cut(s) 215, 662, 669, 737, 1271, 1685
Zsp2I ATGCAT 4 cut(s) 561, 628, 1243, 1628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.