Rh3AG264500

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000768
Physical Location & Seq
Reverse (-)
29645571 .. 29649656
4086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG264500.1

Sequence Viewer

Length: 954 bp
ATGTCTACCCAATGCTTAGCGAGCAGTGGTAGCCCTGCTGCTCAAACTTCACATCTGGATGTTAAAAGACTGACAGCAAATTACAAGCCAAGTATTTGGAGTCACGATTTTCTTCAGTCGTTACATATTGATGATCGCAATCATGAAGAAGTATACAAAGATAATAGGTGGAAGTTGATCGAGGAGGATCTGAAAAATGTGATTGATGCAGAGTCACTAGAGACTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGCCAGTATAACAGAAGCCCTTGATAAAGTTTTGAAGAATCTTGACCAAATAACAAACGAGGATACTCCAAGTCTGCACCTCACTGCTCTCAGCTTCAGACTCCTTAGACAACATGGGTTTCAAGTTTCCCAAGATGTTTTCAAAATTTTCATGGACTGCGACGACAGCTTCAAGGATTGCCTTTGCAAAGATGTCAAAGGAATGTTGAGTCTATACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACACTCTTGGATGAGGCCCTTGCATTCACTAGCATGCACCTAAAGAACCTCAGCAGATTGCAAGTTACTCAAGGCAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCATAGAATGCAAAGTCTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCAGATGCAAATCAAGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATCTTAAAGACATTTCAAGATGGGATGTGAATGCTGTGGAGATTCTTTCAGACTACCAACTTAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAACAAGGAGTGAACGTCCTTCCTTACGTGAGAAAAGCTGTAAGTACATGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

317

Amino Acids

36.39

Weight (kDa)

5.17

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 211 2.9e-50 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 263 - 314 4.4e-09 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 5, 153
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 2 cut(s) 423, 728
AcuI CTGAAG 2 cut(s) 98, 358
AfaI GTAC 2 cut(s) 943, 949
AfiI CCNNNNNNNGG 1 cut(s) 277
AflII CTTAAG 1 cut(s) 836
AflIII ACRYGT 1 cut(s) 944
AgsI TTSAA 9 cut(s) 233, 313, 401, 421, 451, 518, 728, 792, 895
AluBI AGCT 7 cut(s) 372, 447, 500, 671, 739, 841, 935
AluI AGCT 7 cut(s) 372, 447, 500, 671, 739, 841, 935
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 1 cut(s) 195
AoxI GGCC 2 cut(s) 279, 540
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 2 cut(s) 423, 728
AspS9I GGNCC 1 cut(s) 541
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 669, 789
BciVI GTATCC 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 5 cut(s) 218, 555, 665, 672, 740
BfrI CTTAAG 1 cut(s) 836
BfuI GTATCC 1 cut(s) 334
BglII AGATCT 1 cut(s) 775
BisI GCNGC 1 cut(s) 39
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 541
BmsI GCATC 3 cut(s) 196, 627, 697
BplI GAGNNNNNCTC 2 cut(s) 513, 545
Bpu10I CCTNAGC 1 cut(s) 575
Bpu1102I GCTNAGC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 579
BsaAI YACGTR 1 cut(s) 925
BsaBI GATNNNNATC 2 cut(s) 138, 711
BsaJI CCNNGG 1 cut(s) 508
BsaXI ACNNNNNCTCC 2 cut(s) 897, 927
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 641
Bse8I GATNNNNATC 2 cut(s) 138, 711
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 4 cut(s) 64, 246, 541, 805
BseJI GATNNNNATC 2 cut(s) 138, 711
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 2 cut(s) 382, 589
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 2 cut(s) 281, 542
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 3 cut(s) 548, 660, 811
BsnI GGCC 2 cut(s) 281, 542
Bsp1407I TGTACA 1 cut(s) 947
Bsp143I GATC 4 cut(s) 133, 177, 187, 775
Bsp1720I GCTNAGC 1 cut(s) 16
BspANI GGCC 2 cut(s) 281, 542
BspCNI CTCAG 2 cut(s) 381, 588
BspHI TCATGA 1 cut(s) 142
BspPI GGATC 1 cut(s) 195
BspTI CTTAAG 1 cut(s) 836
BsrDI GCAATG 1 cut(s) 641
BsrGI TGTACA 1 cut(s) 947
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 4 cut(s) 133, 177, 187, 775
BssNAI GTATAC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 508
Bst1107I GTATAC 1 cut(s) 154
Bst4CI ACNGT 2 cut(s) 695, 868
BstAFI CTTAAG 1 cut(s) 836
BstAUI TGTACA 1 cut(s) 947
BstBAI YACGTR 1 cut(s) 925
BstC8I GCNNGC 2 cut(s) 22, 560
BstDEI CTNAG 4 cut(s) 16, 368, 383, 575
BstF5I GGATG 4 cut(s) 64, 246, 541, 805
BstKTI GATC 4 cut(s) 136, 180, 190, 778
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 4 cut(s) 133, 177, 187, 775
BstMWI GCNNNNNNNGC 3 cut(s) 21, 30, 444
BstNSI RCATGY 2 cut(s) 562, 948
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 2 cut(s) 187, 775
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 2 cut(s) 187, 775
BstZ17I GTATAC 1 cut(s) 154
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 2 cut(s) 281, 542
BtsCI GGATG 4 cut(s) 64, 246, 541, 805
BtsI GCAGTG 2 cut(s) 31, 360
BtsIMutI CAGTG 3 cut(s) 31, 360, 864
Cac8I GCNNGC 2 cut(s) 22, 560
CciI TCATGA 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 541
Csp6I GTAC 2 cut(s) 942, 948
CviAII CATG 6 cut(s) 143, 392, 430, 559, 626, 945
CviQI GTAC 2 cut(s) 942, 948
DdeI CTNAG 4 cut(s) 16, 368, 383, 575
DpnI GATC 4 cut(s) 135, 179, 189, 777
DpnII GATC 4 cut(s) 133, 177, 187, 775
Eco130I CCWWGG 1 cut(s) 508
Eco57I CTGAAG 2 cut(s) 98, 358
EcoO109I RGGNCCY 1 cut(s) 541
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 6 cut(s) 146, 395, 433, 562, 629, 948
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FaqI GGGAC 1 cut(s) 279
FatI CATG 6 cut(s) 142, 391, 429, 558, 625, 944
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 4 cut(s) 71, 233, 548, 812
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 5 cut(s) 218, 555, 665, 672, 740
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 2 cut(s) 281, 542
Hin1II CATG 6 cut(s) 146, 395, 433, 562, 629, 948
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 8 cut(s) 100, 212, 273, 316, 378, 487, 622, 817
Hpy166II GTNNAC 3 cut(s) 6, 154, 910
Hpy188I TCNGA 3 cut(s) 192, 377, 826
Hpy188III TCNNGA 6 cut(s) 56, 104, 143, 320, 665, 792
Hpy8I GTNNAC 3 cut(s) 6, 154, 910
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 3 cut(s) 512, 889, 926
HpyCH4III ACNGT 2 cut(s) 695, 868
HpyCH4IV ACGT 2 cut(s) 912, 924
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 30, 444
HpyF3I CTNAG 4 cut(s) 16, 368, 383, 575
HpySE526I ACGT 2 cut(s) 912, 924
Hsp92II CATG 6 cut(s) 146, 395, 433, 562, 629, 948
Kzo9I GATC 4 cut(s) 133, 177, 187, 775
LpnPI CCDG 3 cut(s) 41, 48, 295
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 3 cut(s) 196, 627, 697
MaeI CTAG 5 cut(s) 218, 555, 665, 672, 740
MaeII ACGT 2 cut(s) 912, 924
MaeIII GTNAC 4 cut(s) 101, 120, 213, 589
MalI GATC 4 cut(s) 135, 179, 189, 777
MboI GATC 4 cut(s) 133, 177, 187, 775
MboII GAAGA 3 cut(s) 104, 158, 325
MflI RGATCY 2 cut(s) 187, 775
MluCI AATT 4 cut(s) 79, 233, 423, 728
MlyI GAGTC 5 cut(s) 109, 221, 372, 496, 631
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 8 cut(s) 175, 178, 271, 331, 368, 532, 584, 679
Mph1103I ATGCAT 1 cut(s) 631
MseI TTAA 3 cut(s) 63, 780, 837
MslI CAYNNNNRTG 3 cut(s) 57, 129, 557
MspCI CTTAAG 1 cut(s) 836
Mva1269I GAATGC 3 cut(s) 548, 660, 811
MwoI GCNNNNNNNGC 3 cut(s) 21, 30, 444
NdeII GATC 4 cut(s) 133, 177, 187, 775
NlaIII CATG 6 cut(s) 146, 395, 433, 562, 629, 948
NmuCI GTSAC 2 cut(s) 101, 213
NsiI ATGCAT 1 cut(s) 631
NspI RCATGY 2 cut(s) 562, 948
PaeI GCATGC 1 cut(s) 562
PagI TCATGA 1 cut(s) 142
PciI ACATGT 1 cut(s) 944
PctI GAATGC 3 cut(s) 548, 660, 811
PfeI GAWTC 3 cut(s) 273, 316, 817
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 5 cut(s) 108, 220, 372, 495, 630
PpsI GAGTC 5 cut(s) 108, 220, 372, 495, 630
Ppu21I YACGTR 1 cut(s) 925
PscI ACATGT 1 cut(s) 944
PspPI GGNCC 1 cut(s) 541
PsuI RGATCY 2 cut(s) 187, 775
RsaI GTAC 2 cut(s) 943, 949
RsaNI GTAC 2 cut(s) 942, 948
RseI CAYNNNNRTG 3 cut(s) 57, 129, 557
SaqAI TTAA 3 cut(s) 63, 780, 837
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 4 cut(s) 133, 177, 187, 775
Sau96I GGNCC 1 cut(s) 541
SchI GAGTC 5 cut(s) 109, 221, 372, 496, 631
SfaNI GCATC 3 cut(s) 196, 627, 697
SmiMI CAYNNNNRTG 3 cut(s) 57, 129, 557
SmlI CTYRAG 2 cut(s) 594, 836
SmoI CTYRAG 2 cut(s) 594, 836
SphI GCATGC 1 cut(s) 562
Sse9I AATT 4 cut(s) 79, 233, 423, 728
SspMI CTAG 5 cut(s) 218, 555, 665, 672, 740
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 695, 868
TaiI ACGT 2 cut(s) 915, 927
TaqI TCGA 2 cut(s) 180, 276
TasI AATT 4 cut(s) 79, 233, 423, 728
TatI WGTACW 2 cut(s) 941, 947
TfiI GAWTC 3 cut(s) 273, 316, 817
Tru1I TTAA 3 cut(s) 63, 780, 837
Tru9I TTAA 3 cut(s) 63, 780, 837
TscAI CASTG 3 cut(s) 31, 367, 871
TseFI GTSAC 2 cut(s) 101, 213
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 2 cut(s) 101, 213
TspDTI ATGAA 5 cut(s) 159, 418, 492, 888, 900
TspRI CASTG 3 cut(s) 31, 367, 871
Vha464I CTTAAG 1 cut(s) 836
XapI RAATTY 2 cut(s) 423, 728
XbaI TCTAGA 1 cut(s) 664
XceI RCATGY 2 cut(s) 562, 948
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 5 cut(s) 218, 555, 665, 672, 740
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.