RLG00000023196

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000768
Physical Location & Seq
Forward (+)
19771347 .. 19772596
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023196

Sequence Viewer

Length: 783 bp
ATGGGGTTAGCAAAGAAGTTATTCTTCAACAGAGACAGACTGATGGAGTTGTTCTTTTGGTCAGTTGGTATAGTGTTTGAACCTCAACTCAGCAATCTTAGAAAAGGGATATCTAAAGTCAGTGCTCTAATAACGACAATTGATGATGTCTATGATGTTTATGGTGCTTTGGATGAACTAGAGCTATTCACATCTGTTGTTGAAAGCTCTGTTTTGCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAACGTCATTCCTTATGTGAGAAAAGTTTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATTAGTGTCCAGGGTGGTCATTCTAGTCCATACCTACTTTCTACTGAATCAAAAAATCTCAGATGAAACACTTAAATGCTTAAAGAATCACCATGATCTCTTGTGTTGCCTGTCTGTTATTTTTTGGCTCTCAAATGATTTGGTTACTTCAAAGGCAGAACTAGAGAGAGGTGAATCTGCAACTTCAATATCTTGCAACAGACGTGATGGTGTTGTTTCTGATGAGGAATCTGCTTGCAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATGAACAAAGATGAACTACTATTTAGTGCTAGTAGAGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAGCAACGAACCTTGCTCGAATTGCCCAATGCATTTACCAATATGGAGATGGGATTGGTGCCTCGGACAAAAGAGTAAGAACCAGATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

261

Amino Acids

29.49

Weight (kDa)

5.75

Isoelectric Point (pI)

28.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 207 3.9e-49 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 39 - 100 3.7e-07 Terpene synthase family 2, C-terminal metal binding
Terpene_syn_C_2 PF19086 102 - 207 1e-19 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 749
AccB7I CCANNNNNTGG 1 cut(s) 339
AclWI GGATC 1 cut(s) 771
AcsI RAATTY 1 cut(s) 680
AfiI CCNNNNNNNGG 1 cut(s) 339
AgsI TTSAA 7 cut(s) 28, 80, 203, 262, 320, 495, 531
AjiI CACGTC 1 cut(s) 548
AjnI CCWGG 1 cut(s) 353
AluBI AGCT 3 cut(s) 184, 207, 659
AluI AGCT 3 cut(s) 184, 207, 659
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 771
ApeKI GCWGC 2 cut(s) 689, 692
ApoI RAATTY 1 cut(s) 680
Asp700I GAANNNNTTC 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 425, 527
BanI GGYRCC 1 cut(s) 749
BarI GAAGNNNNNNTAC 2 cut(s) 646, 678
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 701, 704
BccI CCATC 3 cut(s) 37, 545, 734
BciT130I CCWGG 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 5 cut(s) 179, 368, 506, 651, 781
BisI GCNGC 2 cut(s) 690, 693
BlsI GCNGC 2 cut(s) 691, 694
Bme1390I CCNGG 1 cut(s) 355
BmgBI CACGTC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 751
BmrFI CCNGG 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 354, 753
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 2 cut(s) 354, 753
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 103, 417
BseXI GCAGC 2 cut(s) 701, 704
BshNI GGYRCC 1 cut(s) 749
BsiHKAI GWGCWC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 439, 776
BspCNI CTCAG 2 cut(s) 102, 416
BspLI GGNNCC 1 cut(s) 751
BspPI GGATC 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 749
BssECI CCNNGG 2 cut(s) 354, 753
BssMI GATC 2 cut(s) 439, 776
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 219, 580
BstDEI CTNAG 3 cut(s) 89, 98, 403
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 2 cut(s) 442, 779
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 439, 776
BstMWI GCNNNNNNNGC 2 cut(s) 656, 713
BstNI CCWGG 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 353
BstV1I GCAGC 2 cut(s) 701, 704
BstX2I RGATCY 1 cut(s) 776
BstYI RGATCY 1 cut(s) 776
BtrI CACGTC 1 cut(s) 548
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 127, 231
Cac8I GCNNGC 2 cut(s) 219, 580
CviAII CATG 2 cut(s) 339, 437
CviJI RGCY 4 cut(s) 184, 207, 472, 659
CviKI_1 RGCY 4 cut(s) 184, 207, 472, 659
DdeI CTNAG 3 cut(s) 89, 98, 403
DpnI GATC 2 cut(s) 441, 778
DpnII GATC 2 cut(s) 439, 776
Eco32I GATATC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 353
EcoRV GATATC 1 cut(s) 111
EcoT22I ATGCAT 2 cut(s) 340, 725
FaeI CATG 2 cut(s) 342, 440
FalI AAGNNNNNCTT 4 cut(s) 8, 40, 312, 344
FatI CATG 2 cut(s) 338, 436
Fnu4HI GCNGC 2 cut(s) 690, 693
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 690, 693
FspBI CTAG 5 cut(s) 179, 368, 506, 651, 781
GluI GCNGC 2 cut(s) 690, 693
Hin1II CATG 2 cut(s) 342, 440
HinfI GANTC 4 cut(s) 391, 430, 518, 572
HphI GGTGA 2 cut(s) 425, 527
Hpy166II GTNNAC 2 cut(s) 277, 304
Hpy188I TCNGA 3 cut(s) 406, 565, 757
Hpy8I GTNNAC 2 cut(s) 277, 304
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 279, 547
HpyCH4V TGCA 5 cut(s) 338, 524, 540, 582, 723
HpyF10VI GCNNNNNNNGC 2 cut(s) 656, 713
HpyF3I CTNAG 3 cut(s) 89, 98, 403
HpySE526I ACGT 2 cut(s) 279, 547
Hsp92II CATG 2 cut(s) 342, 440
Kzo9I GATC 2 cut(s) 439, 776
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 3 cut(s) 340, 367, 467
Lsp1109I GCAGC 2 cut(s) 701, 704
MaeI CTAG 5 cut(s) 179, 368, 506, 651, 781
MaeII ACGT 2 cut(s) 279, 547
MaeIII GTNAC 1 cut(s) 487
MalI GATC 2 cut(s) 441, 778
MboI GATC 2 cut(s) 439, 776
MboII GAAGA 5 cut(s) 16, 332, 628, 631, 654
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 1 cut(s) 776
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 4 cut(s) 138, 595, 680, 711
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 4 cut(s) 93, 506, 562, 763
Mph1103I ATGCAT 2 cut(s) 340, 725
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 2 cut(s) 417, 425
MslI CAYNNNNRTG 1 cut(s) 418
MspR9I CCNGG 1 cut(s) 355
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 355
MwoI GCNNNNNNNGC 2 cut(s) 656, 713
NdeII GATC 2 cut(s) 439, 776
NlaIII CATG 2 cut(s) 342, 440
NlaIV GGNNCC 1 cut(s) 751
NsiI ATGCAT 2 cut(s) 340, 725
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 4 cut(s) 391, 430, 518, 572
PflMI CCANNNNNTGG 1 cut(s) 339
PkrI GCNGC 2 cut(s) 691, 694
Psp6I CCWGG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 751
PsuI RGATCY 1 cut(s) 776
RseI CAYNNNNRTG 1 cut(s) 418
SaqAI TTAA 2 cut(s) 417, 425
SatI GCNGC 2 cut(s) 690, 693
Sau3AI GATC 2 cut(s) 439, 776
ScrFI CCNGG 1 cut(s) 355
SduI GDGCHC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 418
Sse9I AATT 4 cut(s) 138, 595, 680, 711
SspMI CTAG 5 cut(s) 179, 368, 506, 651, 781
StyD4I CCNGG 1 cut(s) 353
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 2 cut(s) 282, 550
TaqI TCGA 1 cut(s) 709
TasI AATT 4 cut(s) 138, 595, 680, 711
TfiI GAWTC 4 cut(s) 391, 430, 518, 572
Tru1I TTAA 2 cut(s) 417, 425
Tru9I TTAA 2 cut(s) 417, 425
TscAI CASTG 2 cut(s) 127, 238
TseI GCWGC 2 cut(s) 689, 692
TspDTI ATGAA 6 cut(s) 189, 255, 267, 423, 638, 648
TspRI CASTG 2 cut(s) 127, 238
Van91I CCANNNNNTGG 1 cut(s) 339
XapI RAATTY 1 cut(s) 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 737
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 5 cut(s) 179, 368, 506, 651, 781
Zsp2I ATGCAT 2 cut(s) 340, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.