FvH4_6g43791

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000768
Physical Location & Seq
Reverse (-)
33837648 .. 33841427
3780 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43791.t1

Sequence Viewer

Length: 1458 bp
ATGCTAGGCTATGATAATGATGCGCAGTCAGTAGAGACTACACTTGAATTAATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCCAGGCCAGTATAATAGGAACCCTTCATAGAATTATGAAGAATCTTGACCAAGTAACAGAAGAGGATACCCCAAGTCTCCACCTCACTGCTCTTAGCTTCAGGCTCCTTCGACAGCATGGGTTTCAAGTCTCCCAAGATGTCTTCAAGATTTTCACGGACTGCTACGGCAACTTCAAGGATTGCCTTTGCAAAGATGTCAAAGGAATGCTGAGTCTGTACGAAGCTTCATTCCTTGGTTTTGAAGGAGAAACCCTCTTGGATGAGGCCCTCGCATTCACCAGCATGCACCTAAAGAACCTCAGCTGCAGGTTACTTGATACTCAAGACATAGATGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGATTAGAGCCAGATGGTACATTGAGGCATACAATAAAAGGGCAGATGCAAATCAGGTGGTGGAAGGATATGGGGTTAGCAAAGAAGTTGCCTTTCGCCAAAGACAGATTGATGGAGTGCTTCTTTTGGTCAGTTGGTATGGTGTTTGAGCCTCAACTCAGCAATCTCAGAAAAGGGTTAACTAAAGTCGGTGCTCTTGTAAGCACTATTGATGATGTCTATGATGTTTATGGTACTTTTGATGAACTAGAGCTATTCACATCTCTTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTCCAAGACTACCAGCTGAAGCTCTCTTTCCTTGCTCTCTACAACACTGTGAACGCAATGGCTTATGAAACTTTGAAGGACCAAGGAGTGGACGTCCTTCCTTACTTGACAAAAGCTTGGGCTGATTTGTGCAAAGCTTTCTTAAGGGAGGCAGAGTGGAGTAACAACAAATATACACCCAAATTTGAAGAATATCTTGCCAATGCATGGATATCAGCGTCCGCGGTGGTCATCTTAGTTCATGCCTACTTCCTACTGAATCAAAATATCTCAGATGAAGCACTTGGATGCTTAGAGAATCACCACGATCTCTTGCGTTGGCCGTCTCTTATTTTTCGGCTTACAAACGATTTGGCTACTTCCGAGGTAGAACTAGAGAGAGGTGAAACTGCAAATTCTATATCCTGCCTCATACGTGGAAGTAGCAGTGATGTCTGTGATGAGGAATCTGCTCGCAAATATATTAGTAATCTGATTGAGAAGAGTTGGAAGAAGATGAACAAAGATGGACAACTTTTTGGTGTTAGTAGTGCTTCTTCTCCATTTACAAAGGAATTCGTTGCAGCAGCAACAAACCTCTCTCGGATTGCCCAATGCATGTACCAATATGGAGACGGGATTGGTGCCCCGGATAAAATAGTAAAGAACCGGATCCTAGCAGTGATTCTACAACCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

486

Amino Acids

55.13

Weight (kDa)

5.17

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 8 - 150 2.1e-46 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 181 - 424 3.5e-85 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 221 - 424 1.6e-54 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 873
Acc16I TGCGCA 1 cut(s) 24
Acc36I ACCTGC 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 1400
AccB7I CCANNNNNTGG 2 cut(s) 865, 984
AccII CGCG 1 cut(s) 1001
AciI CCGC 2 cut(s) 999, 1001
AclWI GGATC 2 cut(s) 1423, 1436
AcoI YGGCCR 1 cut(s) 1097
AcsI RAATTY 4 cut(s) 774, 959, 1171, 1331
AcuI CTGAAG 2 cut(s) 172, 815
AcyI GRCGYC 1 cut(s) 870
AfaI GTAC 4 cut(s) 308, 496, 712, 1379
AfiI CCNNNNNNNGG 3 cut(s) 91, 865, 984
AflII CTTAAG 1 cut(s) 919
AgsI TTSAA 8 cut(s) 47, 215, 235, 265, 332, 749, 853, 965
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 8 cut(s) 186, 314, 393, 730, 793, 799, 893, 914
AluI AGCT 8 cut(s) 186, 314, 393, 730, 793, 799, 893, 914
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 5 cut(s) 29, 170, 223, 1107, 1383
AlwI GGATC 2 cut(s) 1423, 1436
AoxI GGCC 3 cut(s) 93, 354, 1097
ApeKI GCWGC 3 cut(s) 393, 1340, 1343
ApoI RAATTY 4 cut(s) 774, 959, 1171, 1331
AseI ATTAAT 1 cut(s) 50
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 355, 856
AsuC2I CCSGG 1 cut(s) 1406
AsuHPI GGTGA 3 cut(s) 358, 1070, 1172
AvaII GGWCC 1 cut(s) 856
BaeGI GKGCMC 1 cut(s) 1405
BamHI GGATCC 1 cut(s) 1428
BanI GGYRCC 1 cut(s) 1400
BarI GAAGNNNNNNTAC 2 cut(s) 1297, 1329
BbsI GAAGAC 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 673
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 3 cut(s) 380, 1352, 1355
BccI CCATC 4 cut(s) 485, 583, 747, 1277
BceAI ACGGC 2 cut(s) 271, 1084
BciT130I CCWGG 1 cut(s) 92
BciVI GTATCC 1 cut(s) 148
BcnI CCSGG 1 cut(s) 1406
BcoDI GTCTC 5 cut(s) 29, 170, 223, 1107, 1383
BfaI CTAG 4 cut(s) 5, 725, 1151, 1433
BfmI CTRYAG 1 cut(s) 394
BfrI CTTAAG 1 cut(s) 919
BfuAI ACCTGC 1 cut(s) 387
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 3 cut(s) 394, 1341, 1344
BlsI GCNGC 3 cut(s) 395, 1342, 1345
Bme1390I CCNGG 2 cut(s) 92, 1406
Bme18I GGWCC 1 cut(s) 856
BmgT120I GGNCC 2 cut(s) 355, 856
BmiI GGNNCC 4 cut(s) 109, 194, 1402, 1430
BmrFI CCNGG 2 cut(s) 92, 1406
BmsI GCATC 4 cut(s) 10, 444, 513, 1055
BpiI GAAGAC 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 327, 359
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 1406
BsaAI YACGTR 1 cut(s) 1193
BsaBI GATNNNNATC 1 cut(s) 527
BsaHI GRCGYC 1 cut(s) 870
BsaJI CCNNGG 5 cut(s) 322, 859, 999, 1140, 1404
BsaWI WCCGGW 1 cut(s) 1425
BsaXI ACNNNNNCTCC 4 cut(s) 855, 885, 917, 947
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 865, 984
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 2 cut(s) 458, 840
Bse8I GATNNNNATC 1 cut(s) 527
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 5 cut(s) 322, 859, 999, 1140, 1404
BseGI GGATG 4 cut(s) 60, 355, 763, 1070
BseJI GATNNNNATC 1 cut(s) 527
BseLI CCNNNNNNNGG 3 cut(s) 91, 865, 984
BseMI GCAATG 2 cut(s) 458, 840
BseMII CTCAG 5 cut(s) 290, 403, 649, 658, 1062
BseNI ACTGG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 1405
BseXI GCAGC 3 cut(s) 380, 1352, 1355
Bsh1236I CGCG 1 cut(s) 1001
BshFI GGCC 3 cut(s) 95, 356, 1099
BshNI GGYRCC 1 cut(s) 1400
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 2 cut(s) 1406, 1426
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 3 cut(s) 91, 865, 984
BsmAI GTCTC 5 cut(s) 29, 170, 223, 1107, 1383
BsmBI CGTCTC 2 cut(s) 1107, 1383
BsmFI GGGAC 1 cut(s) 93
BsmI GAATGC 4 cut(s) 300, 362, 477, 769
BsnI GGCC 3 cut(s) 95, 356, 1099
Bsp1286I GDGCHC 2 cut(s) 673, 1405
Bsp143I GATC 2 cut(s) 1084, 1428
BspACI CCGC 2 cut(s) 999, 1001
BspANI GGCC 3 cut(s) 95, 356, 1099
BspCNI CTCAG 5 cut(s) 291, 402, 648, 657, 1061
BspFNI CGCG 1 cut(s) 1001
BspLI GGNNCC 4 cut(s) 109, 194, 1402, 1430
BspMAI CTGCAG 1 cut(s) 398
BspMI ACCTGC 1 cut(s) 387
BspPI GGATC 2 cut(s) 1423, 1436
BspT107I GGYRCC 1 cut(s) 1400
BspTI CTTAAG 1 cut(s) 919
BsrDI GCAATG 2 cut(s) 458, 840
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 5 cut(s) 322, 859, 999, 1140, 1404
BssMI GATC 2 cut(s) 1084, 1428
BssNI GRCGYC 1 cut(s) 870
BssT1I CCWWGG 2 cut(s) 322, 859
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 826
Bst6I CTCTTC 2 cut(s) 144, 1253
BstACI GRCGYC 1 cut(s) 870
BstAFI CTTAAG 1 cut(s) 919
BstBAI YACGTR 1 cut(s) 1193
BstC8I GCNNGC 2 cut(s) 374, 1231
BstDEI CTNAG 8 cut(s) 182, 299, 389, 635, 644, 1012, 1048, 1069
BstDSI CCRYGG 1 cut(s) 999
BstF5I GGATG 4 cut(s) 60, 355, 763, 1070
BstFNI CGCG 1 cut(s) 1001
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 2 cut(s) 1087, 1431
BstMAI GTCTC 5 cut(s) 29, 170, 223, 1107, 1383
BstMBI GATC 2 cut(s) 1084, 1428
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 2 cut(s) 376, 1378
BstSCI CCNGG 2 cut(s) 90, 1404
BstSFI CTRYAG 1 cut(s) 394
BstSLI GKGCMC 1 cut(s) 1405
BstUI CGCG 1 cut(s) 1001
BstV1I GCAGC 3 cut(s) 380, 1352, 1355
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 1428
BstYI RGATCY 1 cut(s) 1428
BsuI GTATCC 1 cut(s) 148
BsuRI GGCC 3 cut(s) 95, 356, 1099
BtgI CCRYGG 1 cut(s) 999
BtsCI GGATG 4 cut(s) 60, 355, 763, 1070
BtsI GCAGTG 3 cut(s) 174, 1210, 1443
BtsIMutI CAGTG 4 cut(s) 174, 822, 1210, 1443
BveI ACCTGC 1 cut(s) 387
Cac8I GCNNGC 2 cut(s) 374, 1231
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 355, 856
Cfr42I CCGCGG 1 cut(s) 1002
CseI GACGC 1 cut(s) 984
Csp6I GTAC 4 cut(s) 307, 495, 711, 1378
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CviAII CATG 6 cut(s) 206, 373, 443, 984, 1019, 1375
CviQI GTAC 4 cut(s) 307, 495, 711, 1378
DdeI CTNAG 8 cut(s) 182, 299, 389, 635, 644, 1012, 1048, 1069
DpnI GATC 2 cut(s) 1086, 1430
DpnII GATC 2 cut(s) 1084, 1428
EaeI YGGCCR 1 cut(s) 1097
Eam1104I CTCTTC 2 cut(s) 144, 1253
EarI CTCTTC 2 cut(s) 144, 1253
Eco130I CCWWGG 2 cut(s) 322, 859
Eco32I GATATC 1 cut(s) 990
Eco47I GGWCC 1 cut(s) 856
Eco57I CTGAAG 2 cut(s) 172, 815
EcoO109I RGGNCCY 1 cut(s) 355
EcoRI GAATTC 1 cut(s) 1331
EcoRII CCWGG 1 cut(s) 90
EcoRV GATATC 1 cut(s) 990
EcoT14I CCWWGG 2 cut(s) 322, 859
EcoT22I ATGCAT 3 cut(s) 448, 985, 1376
ErhI CCWWGG 2 cut(s) 322, 859
Esp3I CGTCTC 2 cut(s) 1107, 1383
FaeI CATG 6 cut(s) 209, 376, 446, 987, 1022, 1378
FalI AAGNNNNNCTT 2 cut(s) 957, 989
FaqI GGGAC 1 cut(s) 93
FatI CATG 6 cut(s) 205, 372, 442, 983, 1018, 1374
Fnu4HI GCNGC 3 cut(s) 394, 1341, 1344
FokI GGATG 4 cut(s) 47, 362, 770, 1077
Fsp4HI GCNGC 3 cut(s) 394, 1341, 1344
FspBI CTAG 4 cut(s) 5, 725, 1151, 1433
FspI TGCGCA 1 cut(s) 24
GlaI GCGC 1 cut(s) 24
GluI GCNGC 3 cut(s) 394, 1341, 1344
HaeIII GGCC 3 cut(s) 95, 356, 1099
HapII CCGG 2 cut(s) 1406, 1426
HgaI GACGC 1 cut(s) 984
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 870
Hin1II CATG 6 cut(s) 209, 376, 446, 987, 1022, 1378
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HindIII AAGCTT 3 cut(s) 312, 891, 912
HinfI GANTC 8 cut(s) 87, 130, 301, 439, 1036, 1075, 1223, 1441
HpaI GTTAAC 1 cut(s) 657
HpaII CCGG 2 cut(s) 1406, 1426
HphI GGTGA 3 cut(s) 358, 1070, 1172
Hpy166II GTNNAC 3 cut(s) 657, 829, 868
Hpy188I TCNGA 5 cut(s) 647, 1051, 1141, 1251, 1362
Hpy188III TCNNGA 3 cut(s) 134, 235, 413
Hpy8I GTNNAC 3 cut(s) 657, 829, 868
HpyAV CCTTC 6 cut(s) 122, 206, 326, 535, 847, 884
HpyCH4III ACNGT 1 cut(s) 826
HpyCH4IV ACGT 2 cut(s) 870, 1192
HpyF3I CTNAG 8 cut(s) 182, 299, 389, 635, 644, 1012, 1048, 1069
HpySE526I ACGT 2 cut(s) 870, 1192
Hsp92I GRCGYC 1 cut(s) 870
Hsp92II CATG 6 cut(s) 209, 376, 446, 987, 1022, 1378
HspAI GCGC 1 cut(s) 23
KspAI GTTAAC 1 cut(s) 657
KspI CCGCGG 1 cut(s) 1002
Kzo9I GATC 2 cut(s) 1084, 1428
LmnI GCTCC 1 cut(s) 198
Lsp1109I GCAGC 3 cut(s) 380, 1352, 1355
LweI GCATC 4 cut(s) 10, 444, 513, 1055
MaeI CTAG 4 cut(s) 5, 725, 1151, 1433
MaeII ACGT 2 cut(s) 870, 1192
MaeIII GTNAC 3 cut(s) 142, 399, 938
MalI GATC 2 cut(s) 1086, 1430
MboI GATC 2 cut(s) 1084, 1428
MboII GAAGA 8 cut(s) 139, 161, 223, 977, 1270, 1279, 1282, 1305
MflI RGATCY 1 cut(s) 1428
MhlI GDGCHC 2 cut(s) 673, 1405
MluCI AATT 7 cut(s) 47, 51, 120, 774, 959, 1171, 1331
MlyI GAGTC 2 cut(s) 310, 448
MmeI TCCRAC 2 cut(s) 88, 1244
Mph1103I ATGCAT 3 cut(s) 448, 985, 1376
MseI TTAA 4 cut(s) 50, 656, 920, 1456
MslI CAYNNNNRTG 2 cut(s) 371, 1063
MspA1I CMGCKG 3 cut(s) 393, 793, 1001
MspCI CTTAAG 1 cut(s) 919
MspI CCGG 2 cut(s) 1406, 1426
MspR9I CCNGG 2 cut(s) 92, 1406
Mva1269I GAATGC 4 cut(s) 300, 362, 477, 769
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 1001
NciI CCSGG 1 cut(s) 1406
NdeII GATC 2 cut(s) 1084, 1428
NlaIII CATG 6 cut(s) 209, 376, 446, 987, 1022, 1378
NlaIV GGNNCC 4 cut(s) 109, 194, 1402, 1430
NsbI TGCGCA 1 cut(s) 24
NsiI ATGCAT 3 cut(s) 448, 985, 1376
NspI RCATGY 2 cut(s) 376, 1378
PaeI GCATGC 1 cut(s) 376
PctI GAATGC 4 cut(s) 300, 362, 477, 769
PfeI GAWTC 6 cut(s) 87, 130, 1036, 1075, 1223, 1441
PflMI CCANNNNNTGG 2 cut(s) 865, 984
PkrI GCNGC 3 cut(s) 395, 1342, 1345
PleI GAGTC 2 cut(s) 309, 447
PpsI GAGTC 2 cut(s) 309, 447
Ppu21I YACGTR 1 cut(s) 1193
PshBI ATTAAT 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 4 cut(s) 109, 194, 1402, 1430
PspPI GGNCC 2 cut(s) 355, 856
PstI CTGCAG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 1428
PvuII CAGCTG 2 cut(s) 393, 793
RsaI GTAC 4 cut(s) 308, 496, 712, 1379
RsaNI GTAC 4 cut(s) 307, 495, 711, 1378
RseI CAYNNNNRTG 2 cut(s) 371, 1063
SacII CCGCGG 1 cut(s) 1002
SaqAI TTAA 4 cut(s) 50, 656, 920, 1456
SatI GCNGC 3 cut(s) 394, 1341, 1344
Sau3AI GATC 2 cut(s) 1084, 1428
Sau96I GGNCC 2 cut(s) 355, 856
SchI GAGTC 2 cut(s) 310, 448
ScrFI CCNGG 2 cut(s) 92, 1406
SduI GDGCHC 2 cut(s) 673, 1405
SfaNI GCATC 4 cut(s) 10, 444, 513, 1055
SfcI CTRYAG 1 cut(s) 394
Sfr303I CCGCGG 1 cut(s) 1002
SgrBI CCGCGG 1 cut(s) 1002
SinI GGWCC 1 cut(s) 856
SmiMI CAYNNNNRTG 2 cut(s) 371, 1063
SmlI CTYRAG 2 cut(s) 411, 919
SmoI CTYRAG 2 cut(s) 411, 919
SphI GCATGC 1 cut(s) 376
Sse9I AATT 7 cut(s) 47, 51, 120, 774, 959, 1171, 1331
SsiI CCGC 2 cut(s) 999, 1001
SspMI CTAG 4 cut(s) 5, 725, 1151, 1433
StyD4I CCNGG 2 cut(s) 90, 1404
StyI CCWWGG 2 cut(s) 322, 859
TaaI ACNGT 1 cut(s) 826
TaiI ACGT 2 cut(s) 873, 1195
TaqI TCGA 1 cut(s) 199
TasI AATT 7 cut(s) 47, 51, 120, 774, 959, 1171, 1331
TfiI GAWTC 6 cut(s) 87, 130, 1036, 1075, 1223, 1441
Tru1I TTAA 4 cut(s) 50, 656, 920, 1456
Tru9I TTAA 4 cut(s) 50, 656, 920, 1456
TscAI CASTG 4 cut(s) 181, 829, 1210, 1443
TseI GCWGC 3 cut(s) 393, 1340, 1343
TspDTI ATGAA 8 cut(s) 104, 140, 306, 735, 858, 1007, 1068, 1289
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 4 cut(s) 181, 829, 1210, 1443
Van91I CCANNNNNTGG 2 cut(s) 865, 984
Vha464I CTTAAG 1 cut(s) 919
VpaK11BI GGWCC 1 cut(s) 856
VspI ATTAAT 1 cut(s) 50
XapI RAATTY 4 cut(s) 774, 959, 1171, 1331
XceI RCATGY 2 cut(s) 376, 1378
XspI CTAG 4 cut(s) 5, 725, 1151, 1433
ZraI GACGTC 1 cut(s) 871
Zsp2I ATGCAT 3 cut(s) 448, 985, 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.