Rh2AG549100

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000768
Physical Location & Seq
Reverse (-)
77900896 .. 77901590
695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG549100.1

Sequence Viewer

Length: 609 bp
ATGTTGATGATGATCTGTGCTCTCACATCTTGCTTGCATATCAATTCTCAGTGGGCTGATATGTGCAAATCTTGGTTAACGGAGGCAGAGTGGTGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCAAATGCATGGATATCAGTGTCCGGAGTGGTCATTCTAGTCCATACCTACTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTAAATGCTTAGAGAATCACCAGGATCTCTTGCGTTGGCCGTCTGTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCCTGCATCAAACATGGTGGTGTTGTTTCTGATGAGGAATCTGCTCACAAATATATTAGTAATTTGATTGAGAGTAGTTGGAAGAAGATGAACAAAGATGGACTAATATTTGGTGCCAATAGTGCTTCTTCTCCATTCACAAAAGAATTTGTAGCAGCAGCAACAGACCTTGCTCGAATTGCCCAATGTATCTACCAATATGGAGACGGGATTGGTGCCCCGGATAAAAGAGTAAAGAACCGGATCCTAGCAGTGATTGTACAACCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

202

Amino Acids

22.6

Weight (kDa)

5.85

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 13 - 141 2.8e-37 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 13 - 141 1.3e-34 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 449, 551
AccIII TCCGGA 1 cut(s) 155
AclWI GGATC 3 cut(s) 249, 574, 587
AcoI YGGCCR 1 cut(s) 254
AcsI RAATTY 1 cut(s) 482
AfaI GTAC 2 cut(s) 107, 597
AgsI TTSAA 2 cut(s) 122, 333
AjnI CCWGG 1 cut(s) 237
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 3 cut(s) 249, 574, 587
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 491, 494
ApoI RAATTY 1 cut(s) 482
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 2 cut(s) 227, 329
AsuII TTCGAA 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 556
BamHI GGATCC 1 cut(s) 579
BanI GGYRCC 2 cut(s) 449, 551
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 503, 506
BccI CCATC 1 cut(s) 428
BceAI ACGGC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 1 cut(s) 557
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 3 cut(s) 170, 308, 584
BisI GCNGC 2 cut(s) 492, 495
BlsI GCNGC 2 cut(s) 493, 496
Bme1390I CCNGG 2 cut(s) 239, 557
BmiI GGNNCC 3 cut(s) 451, 553, 581
BmrFI CCNGG 2 cut(s) 239, 557
BmsI GCATC 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 557
BsaBI GATNNNNATC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 555
BsaWI WCCGGW 2 cut(s) 155, 576
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse8I GATNNNNATC 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 155
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 555
BseJI GATNNNNATC 1 cut(s) 11
BseMII CTCAG 2 cut(s) 62, 219
BseSI GKGCMC 1 cut(s) 556
BseXI GCAGC 2 cut(s) 503, 506
BshFI GGCC 1 cut(s) 256
BshNI GGYRCC 2 cut(s) 449, 551
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 3 cut(s) 156, 557, 577
BsmAI GTCTC 1 cut(s) 534
BsmBI CGTCTC 1 cut(s) 534
BsnI GGCC 1 cut(s) 256
Bsp119I TTCGAA 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 22, 556
Bsp13I TCCGGA 1 cut(s) 155
Bsp1407I TGTACA 1 cut(s) 595
Bsp143I GATC 3 cut(s) 12, 241, 579
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 2 cut(s) 61, 218
BspEI TCCGGA 1 cut(s) 155
BspLI GGNNCC 3 cut(s) 451, 553, 581
BspPI GGATC 3 cut(s) 249, 574, 587
BspT104I TTCGAA 1 cut(s) 296
BspT107I GGYRCC 2 cut(s) 449, 551
BsrGI TGTACA 1 cut(s) 595
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 3 cut(s) 12, 241, 579
Bst2UI CCWGG 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 595
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 3 cut(s) 48, 205, 226
BstKTI GATC 3 cut(s) 15, 244, 582
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 3 cut(s) 12, 241, 579
BstMWI GCNNNNNNNGC 2 cut(s) 458, 515
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 237, 555
BstSLI GKGCMC 1 cut(s) 556
BstV1I GCAGC 2 cut(s) 503, 506
BstX2I RGATCY 2 cut(s) 241, 579
BstYI RGATCY 2 cut(s) 241, 579
BsuRI GGCC 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 3 cut(s) 56, 156, 594
Cac8I GCNNGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 106, 596
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 2 cut(s) 141, 350
CviJI RGCY 3 cut(s) 56, 256, 274
CviKI_1 RGCY 3 cut(s) 56, 256, 274
CviQI GTAC 2 cut(s) 106, 596
DdeI CTNAG 3 cut(s) 48, 205, 226
DpnI GATC 3 cut(s) 14, 243, 581
DpnII GATC 3 cut(s) 12, 241, 579
EaeI YGGCCR 1 cut(s) 254
Eco32I GATATC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 237
EcoRV GATATC 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 534
FaeI CATG 2 cut(s) 144, 353
FaiI YATR 7 cut(s) 39, 62, 142, 177, 351, 390, 537
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 2 cut(s) 140, 349
Fnu4HI GCNGC 2 cut(s) 492, 495
Fsp4HI GCNGC 2 cut(s) 492, 495
FspBI CTAG 3 cut(s) 170, 308, 584
GluI GCNGC 2 cut(s) 492, 495
HaeIII GGCC 1 cut(s) 256
HapII CCGG 3 cut(s) 156, 557, 577
Hin1II CATG 2 cut(s) 144, 353
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 3 cut(s) 193, 232, 374
HpaI GTTAAC 1 cut(s) 78
HpaII CCGG 3 cut(s) 156, 557, 577
HphI GGTGA 2 cut(s) 227, 329
Hpy166II GTNNAC 2 cut(s) 78, 108
Hpy188I TCNGA 2 cut(s) 208, 367
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 2 cut(s) 78, 108
HpyAV CCTTC 1 cut(s) 292
HpyCH4V TGCA 6 cut(s) 37, 66, 134, 140, 326, 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 515
HpyF3I CTNAG 3 cut(s) 48, 205, 226
Hsp92II CATG 2 cut(s) 144, 353
Kpn2I TCCGGA 1 cut(s) 155
KspAI GTTAAC 1 cut(s) 78
Kzo9I GATC 3 cut(s) 12, 241, 579
LpnPI CCDG 6 cut(s) 169, 224, 251, 352, 570, 590
Lsp1109I GCAGC 2 cut(s) 503, 506
LweI GCATC 1 cut(s) 351
MaeI CTAG 3 cut(s) 170, 308, 584
MaeIII GTNAC 2 cut(s) 95, 289
MalI GATC 3 cut(s) 14, 243, 581
MboI GATC 3 cut(s) 12, 241, 579
MboII GAAGA 4 cut(s) 134, 430, 433, 456
MflI RGATCY 2 cut(s) 241, 579
MhlI GDGCHC 2 cut(s) 22, 556
MluCI AATT 4 cut(s) 43, 397, 482, 513
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 3 cut(s) 76, 308, 364
Mph1103I ATGCAT 1 cut(s) 142
MroI TCCGGA 1 cut(s) 155
MseI TTAA 2 cut(s) 77, 219
MslI CAYNNNNRTG 2 cut(s) 220, 354
MspI CCGG 3 cut(s) 156, 557, 577
MspR9I CCNGG 2 cut(s) 239, 557
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 2 cut(s) 458, 515
NciI CCSGG 1 cut(s) 557
NdeII GATC 3 cut(s) 12, 241, 579
NlaIII CATG 2 cut(s) 144, 353
NlaIV GGNNCC 3 cut(s) 451, 553, 581
NmuCI GTSAC 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 142
NspV TTCGAA 1 cut(s) 296
PfeI GAWTC 3 cut(s) 193, 232, 374
PkrI GCNGC 2 cut(s) 493, 496
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 451, 553, 581
PsuI RGATCY 2 cut(s) 241, 579
RsaI GTAC 2 cut(s) 107, 597
RsaNI GTAC 2 cut(s) 106, 596
RseI CAYNNNNRTG 2 cut(s) 220, 354
SaqAI TTAA 2 cut(s) 77, 219
SatI GCNGC 2 cut(s) 492, 495
Sau3AI GATC 3 cut(s) 12, 241, 579
ScrFI CCNGG 2 cut(s) 239, 557
SduI GDGCHC 2 cut(s) 22, 556
SetI ASST 4 cut(s) 115, 182, 319, 507
SfaNI GCATC 1 cut(s) 351
SfuI TTCGAA 1 cut(s) 296
SmiMI CAYNNNNRTG 2 cut(s) 220, 354
Sse9I AATT 4 cut(s) 43, 397, 482, 513
SspI AATATT 1 cut(s) 444
SspMI CTAG 3 cut(s) 170, 308, 584
StyD4I CCNGG 2 cut(s) 237, 555
TaqI TCGA 2 cut(s) 296, 511
TasI AATT 4 cut(s) 43, 397, 482, 513
TatI WGTACW 2 cut(s) 105, 595
TfiI GAWTC 3 cut(s) 193, 232, 374
Tru1I TTAA 2 cut(s) 77, 219
Tru9I TTAA 2 cut(s) 77, 219
TscAI CASTG 3 cut(s) 56, 156, 594
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 2 cut(s) 491, 494
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 225, 440
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 3 cut(s) 56, 156, 594
XapI RAATTY 1 cut(s) 482
XspI CTAG 3 cut(s) 170, 308, 584
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.