AT2G24210

synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
10294286 .. 10297597
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24210.1

Sequence Viewer

Length: 1776 bp
ATGGCCACTCTCCTGCAAATAGGTTCAGGTGTGATTTATAGTAATGCCCTTAGGAAGACGCTTCGACGTCCTCAGTCTTCTACATGCATCATAGTGACCGAAACCACACCATGTAATAAGTCTCCCACAGTTCAGCGTCGTTCTGCGAACTATCAGCCTTCTCGTTGGGACCATCACCATCTCCTCTCGGTCGAAAATAAATTTGCGAAAGATAAAAGGGTACGAGAGAGAGATTTGTTGAAGGAAAAAGTGAGAAAGATGCTCAATGATGAGCAAAAGACTTATCTTGACCAATTGGAGTTCATTGACGATCTACAAAAACTCGGGGTTTCTTATCATTTTGAAGCGGAAATCGACAACATTTTAACATCTTCTTATAAAAAAGATAGAACAAACATCCAGGAGAGTGACCTACATGCCACCGCACTCGAGTTCCGACTTTTCAGGCAACATGGTTTCAATGTTTCAGAAGATGTATTCGATGTTTTCATGGAAAATTGTGGGAAGTTTGACCGTGATGATATATATGGTTTAATATCTCTTTACGAAGCATCATATCTTTCGACAAAATTGGATAAAAACCTGCAAATATTCATCAGACCTTTTGCTACACAACAACTCAGAGACTTTGTTGATACTCATAGTAATGAAGATTTTGGGTCGTGTGACATGGTGGAAATTGTGGTCCAAGCGTTGGATATGCCCTACTATTGGCAAATGAGAAGGCTATCCACCAGATGGTACATAGATGTGTATGGAAAAAGACAAAATTATAAGAACCTTGTCGTCGTTGAATTTGCCAAGATTGATTTCAACATCGTACAAGCTATTCATCAAGAGGAACTCAAAAACGTTTCCAGCTGGTGGATGGAGACAGGTTTAGGTAAGCAACTCTACTTTGCAAGAGACAGAATAGTGGAGAATTATTTCTGGACGATTGGACAAATCCAAGAGCCTCAATACGGATACGTTCGACAAACAATGACGAAAATAAATGCACTCCTTACTACAATTGATGATATCTACGATATCTATGGCACTCTTGAAGAACTTCAGCTTTTCACTGTCGCGTTTGAAAACTGGGATATAAATCGTCTTGATGAACTCCCCGAGTACATGAGGTTGTGTTTTCTTGTTATATACAATGAAGTCAATAGCATTGCATGTGAGATTCTCAGAACTAAAAATATCAACGTGATCCCATTCCTCAAAAAATCTTGGACAGATGTATCCAAAGCGTATTTAGTAGAAGCAAAGTGGTACAAAAGTGGTCACAAACCAAATTTGGAAGAGTACATGCAAAATGCTCGGATTTCAATCTCGTCCCCAACGATATTTGTTCACTTCTACTGCGTATTCTCCGACCAGCTCTCTATTCAGGTCTTGGAGACTTTGTCCCAACACCAACAAAACGTCGTCCGATGCTCCTCCTCAGTGTTCCGTCTAGCCAACGACCTTGTAACCTCACCGGATGAATTGGCGAGAGGAGACGTCTGCAAATCCATCCAATGTTACATGAGTGAAACTGGAGCATCAGAGGATAAGGCGCGTTCGCATGTTCGACAGATGATCAATGACTTGTGGGATGAAATGAATTATGAGAAAATGGCACATAGCTCTTCGATACTCCATCATGATTTTATGGAAACAGTGATAAATTTGGCACGCATGTCTCAATGCATGTATCAATATGGCGATGGCCATGGCTCTCCCGAAAAAGCCAAAATCGTTGATCGTGTCATGTCCTTACTCTTCAATCCGATTCCTTTAGATTGA

Protein Analysis

591

Amino Acids

69.28

Weight (kDa)

5.73

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 56 - 232 2.4e-45 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 291 - 529 1.1e-85 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 330 - 530 7.7e-56 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 378, 774
AatII GACGTC 2 cut(s) 70, 1494
Acc36I ACCTGC 1 cut(s) 591
AccB7I CCANNNNNTGG 3 cut(s) 694, 738, 864
AccII CGCG 2 cut(s) 1070, 1549
AciI CCGC 2 cut(s) 347, 423
AclI AACGTT 1 cut(s) 852
AclWI GGATC 1 cut(s) 1192
AcoI YGGCCR 2 cut(s) 3, 1699
AcsI RAATTY 4 cut(s) 200, 794, 1282, 1657
AcuI CTGAAG 1 cut(s) 1037
AcyI GRCGYC 2 cut(s) 67, 1491
AfaI GTAC 6 cut(s) 222, 743, 822, 1115, 1262, 1295
AfiI CCNNNNNNNGG 5 cut(s) 694, 711, 738, 864, 962
AgsI TTSAA 9 cut(s) 241, 344, 460, 794, 814, 1046, 1076, 1317, 1756
AjnI CCWGG 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
AluBI AGCT 5 cut(s) 827, 861, 1057, 1369, 1617
AluI AGCT 5 cut(s) 827, 861, 1057, 1369, 1617
Alw26I GTCTC 7 cut(s) 126, 618, 866, 900, 1382, 1482, 1677
AlwI GGATC 1 cut(s) 1192
Ama87I CYCGRG 3 cut(s) 323, 428, 1109
AoxI GGCC 2 cut(s) 3, 1699
ApoI RAATTY 4 cut(s) 200, 794, 1282, 1657
Asp700I GAANNNNTTC 2 cut(s) 926, 1050
AspLEI GCGC 1 cut(s) 1549
AspS9I GGNCC 2 cut(s) 169, 685
AsuHPI GGTGA 2 cut(s) 167, 1458
AvaI CYCGRG 3 cut(s) 323, 428, 1109
AvaII GGWCC 2 cut(s) 169, 685
AxyI CCTNAGG 1 cut(s) 50
BaeI ACNNNNGTAYC 4 cut(s) 1212, 1245, 1252, 1285
BalI TGGCCA 2 cut(s) 5, 1701
BbsI GAAGAC 2 cut(s) 62, 69
BccI CCATC 7 cut(s) 180, 186, 732, 862, 1511, 1638, 1691
BcgI CGANNNNNNTGC 2 cut(s) 1289, 1323
BciT130I CCWGG 1 cut(s) 401
BciVI GTATCC 2 cut(s) 959, 1240
BclI TGATCA 1 cut(s) 1569
BcoDI GTCTC 7 cut(s) 126, 618, 866, 900, 1382, 1482, 1677
BfaI CTAG 1 cut(s) 1445
BfuAI ACCTGC 1 cut(s) 591
BfuI GTATCC 2 cut(s) 959, 1240
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 2 cut(s) 169, 685
BmeT110I CYCGRG 3 cut(s) 323, 428, 1109
BmgT120I GGNCC 2 cut(s) 169, 685
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 401
BmrI ACTGGG 1 cut(s) 1090
BmsI GCATC 5 cut(s) 96, 249, 560, 1412, 1541
BmuI ACTGGG 1 cut(s) 1090
BpiI GAAGAC 2 cut(s) 62, 69
BpmI CTGGAG 1 cut(s) 1548
BsaBI GATNNNNATC 2 cut(s) 1089, 1316
BsaHI GRCGYC 2 cut(s) 67, 1491
BsaJI CCNNGG 1 cut(s) 1702
BsaWI WCCGGW 1 cut(s) 1468
BsaXI ACNNNNNCTCC 2 cut(s) 1379, 1409
Bsc4I CCNNNNNNNGG 5 cut(s) 694, 711, 738, 864, 962
Bse1I ACTGG 2 cut(s) 1085, 1531
Bse21I CCTNAGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 1158
Bse8I GATNNNNATC 2 cut(s) 1089, 1316
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 1702
BseGI GGATG 5 cut(s) 396, 873, 1477, 1503, 1591
BseJI GATNNNNATC 2 cut(s) 1089, 1316
BseLI CCNNNNNNNGG 5 cut(s) 694, 711, 738, 864, 962
BseMI GCAATG 1 cut(s) 1158
BseMII CTCAG 4 cut(s) 86, 634, 1189, 1446
BseNI ACTGG 2 cut(s) 1085, 1531
BseRI GAGGAG 4 cut(s) 173, 1417, 1420, 1500
Bsh1236I CGCG 2 cut(s) 1070, 1549
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 5, 1701
BsiEI CGRYCG 1 cut(s) 192
BsiHKCI CYCGRG 3 cut(s) 323, 428, 1109
BsiSI CCGG 1 cut(s) 1469
BslFI GGGAC 3 cut(s) 182, 1309, 1381
BslI CCNNNNNNNGG 5 cut(s) 694, 711, 738, 864, 962
BsmAI GTCTC 7 cut(s) 126, 618, 866, 900, 1382, 1482, 1677
BsmBI CGTCTC 1 cut(s) 1482
BsmFI GGGAC 3 cut(s) 182, 1309, 1381
BsnI GGCC 2 cut(s) 5, 1701
BsoBI CYCGRG 3 cut(s) 323, 428, 1109
Bsp143I GATC 4 cut(s) 310, 1197, 1569, 1732
Bsp19I CCATGG 1 cut(s) 1702
BspACI CCGC 2 cut(s) 347, 423
BspANI GGCC 2 cut(s) 5, 1701
BspCNI CTCAG 4 cut(s) 85, 633, 1188, 1445
BspFNI CGCG 2 cut(s) 1070, 1549
BspHI TCATGA 1 cut(s) 1633
BspLI GGNNCC 1 cut(s) 170
BspMI ACCTGC 1 cut(s) 591
BspPI GGATC 1 cut(s) 1192
BspQI GCTCTTC 1 cut(s) 1624
BsrDI GCAATG 1 cut(s) 1158
BsrI ACTGG 2 cut(s) 1085, 1531
BssECI CCNNGG 1 cut(s) 1702
BssMI GATC 4 cut(s) 310, 1197, 1569, 1732
BssNI GRCGYC 2 cut(s) 67, 1491
BssT1I CCWWGG 1 cut(s) 1702
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 4 cut(s) 130, 515, 1066, 1651
Bst6I CTCTTC 3 cut(s) 1284, 1624, 1757
BstACI GRCGYC 2 cut(s) 67, 1491
BstC8I GCNNGC 1 cut(s) 1666
BstDEI CTNAG 5 cut(s) 50, 72, 620, 1175, 1432
BstDSI CCRYGG 1 cut(s) 1702
BstF5I GGATG 5 cut(s) 396, 873, 1477, 1503, 1591
BstFNI CGCG 2 cut(s) 1070, 1549
BstHHI GCGC 1 cut(s) 1549
BstKTI GATC 4 cut(s) 313, 1200, 1572, 1735
BstMAI GTCTC 7 cut(s) 126, 618, 866, 900, 1382, 1482, 1677
BstMBI GATC 4 cut(s) 310, 1197, 1569, 1732
BstMCI CGRYCG 1 cut(s) 192
BstNI CCWGG 1 cut(s) 401
BstNSI RCATGY 7 cut(s) 87, 419, 1167, 1300, 1559, 1672, 1684
BstSCI CCNGG 1 cut(s) 399
BstUI CGCG 2 cut(s) 1070, 1549
BstV2I GAAGAC 2 cut(s) 62, 69
Bsu36I CCTNAGG 1 cut(s) 50
BsuI GTATCC 2 cut(s) 959, 1240
BsuRI GGCC 2 cut(s) 5, 1701
BtgI CCRYGG 1 cut(s) 1702
BtgZI GCGATG 1 cut(s) 1710
BtsCI GGATG 5 cut(s) 396, 873, 1477, 1503, 1591
BtsIMutI CAGTG 3 cut(s) 1062, 1440, 1656
BveI ACCTGC 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 1666
CciI TCATGA 1 cut(s) 1633
CfoI GCGC 1 cut(s) 1549
Cfr13I GGNCC 2 cut(s) 169, 685
CseI GACGC 2 cut(s) 67, 125
Csp6I GTAC 6 cut(s) 221, 742, 821, 1114, 1261, 1294
CviQI GTAC 6 cut(s) 221, 742, 821, 1114, 1261, 1294
DdeI CTNAG 5 cut(s) 50, 72, 620, 1175, 1432
DpnI GATC 4 cut(s) 312, 1199, 1571, 1734
DpnII GATC 4 cut(s) 310, 1197, 1569, 1732
EaeI YGGCCR 2 cut(s) 3, 1699
Eam1104I CTCTTC 3 cut(s) 1284, 1624, 1757
EarI CTCTTC 3 cut(s) 1284, 1624, 1757
Eco130I CCWWGG 1 cut(s) 1702
Eco32I GATATC 2 cut(s) 1021, 1030
Eco47I GGWCC 2 cut(s) 169, 685
Eco57I CTGAAG 1 cut(s) 1037
Eco81I CCTNAGG 1 cut(s) 50
Eco88I CYCGRG 3 cut(s) 323, 428, 1109
EcoRII CCWGG 1 cut(s) 399
EcoRV GATATC 2 cut(s) 1021, 1030
EcoT14I CCWWGG 1 cut(s) 1702
EcoT22I ATGCAT 2 cut(s) 89, 1682
ErhI CCWWGG 1 cut(s) 1702
Esp3I CGTCTC 1 cut(s) 1482
FaqI GGGAC 3 cut(s) 182, 1309, 1381
FbaI TGATCA 1 cut(s) 1569
FokI GGATG 5 cut(s) 383, 880, 1484, 1490, 1598
FspBI CTAG 1 cut(s) 1445
GlaI GCGC 1 cut(s) 1548
GsuI CTGGAG 1 cut(s) 1548
HaeIII GGCC 2 cut(s) 5, 1701
HapII CCGG 1 cut(s) 1469
HgaI GACGC 2 cut(s) 67, 125
HhaI GCGC 1 cut(s) 1549
Hin1I GRCGYC 2 cut(s) 67, 1491
Hin6I GCGC 1 cut(s) 1547
HinP1I GCGC 1 cut(s) 1547
HinfI GANTC 2 cut(s) 1171, 1762
HpaII CCGG 1 cut(s) 1469
HphI GGTGA 2 cut(s) 167, 1458
Hpy166II GTNNAC 1 cut(s) 1342
Hpy188III TCNNGA 7 cut(s) 287, 836, 931, 1043, 1097, 1634, 1712
Hpy8I GTNNAC 1 cut(s) 1342
Hpy99I CGWCG 4 cut(s) 69, 141, 791, 1418
HpyAV CCTTC 3 cut(s) 168, 235, 717
HpyCH4III ACNGT 4 cut(s) 130, 515, 1066, 1651
HpyCH4IV ACGT 6 cut(s) 67, 852, 969, 1194, 1413, 1491
HpyCH4V TGCA 9 cut(s) 16, 87, 586, 902, 998, 1163, 1300, 1497, 1680
HpyF3I CTNAG 5 cut(s) 50, 72, 620, 1175, 1432
HpySE526I ACGT 6 cut(s) 67, 852, 969, 1194, 1413, 1491
Hsp92I GRCGYC 2 cut(s) 67, 1491
HspAI GCGC 1 cut(s) 1547
Ksp22I TGATCA 1 cut(s) 1569
Kzo9I GATC 4 cut(s) 310, 1197, 1569, 1732
LguI GCTCTTC 1 cut(s) 1624
LmnI GCTCC 2 cut(s) 1430, 1529
LweI GCATC 5 cut(s) 96, 249, 560, 1412, 1541
MaeI CTAG 1 cut(s) 1445
MaeII ACGT 6 cut(s) 67, 852, 969, 1194, 1413, 1491
MaeIII GTNAC 6 cut(s) 94, 407, 665, 1271, 1459, 1511
MalI GATC 4 cut(s) 312, 1199, 1571, 1734
MboI GATC 4 cut(s) 310, 1197, 1569, 1732
MboII GAAGA 9 cut(s) 67, 69, 363, 482, 662, 1058, 1301, 1611, 1744
MfeI CAATTG 2 cut(s) 293, 1011
MlsI TGGCCA 2 cut(s) 5, 1701
MluNI TGGCCA 2 cut(s) 5, 1701
MmeI TCCRAC 3 cut(s) 460, 675, 1386
Mox20I TGGCCA 2 cut(s) 5, 1701
Mph1103I ATGCAT 2 cut(s) 89, 1682
MroXI GAANNNNTTC 2 cut(s) 926, 1050
MscI TGGCCA 2 cut(s) 5, 1701
MseI TTAA 2 cut(s) 365, 533
MslI CAYNNNNRTG 3 cut(s) 92, 645, 749
Msp20I TGGCCA 2 cut(s) 5, 1701
MspA1I CMGCKG 1 cut(s) 861
MspI CCGG 1 cut(s) 1469
MspR9I CCNGG 1 cut(s) 401
MunI CAATTG 2 cut(s) 293, 1011
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 2 cut(s) 1070, 1549
NcoI CCATGG 1 cut(s) 1702
NdeII GATC 4 cut(s) 310, 1197, 1569, 1732
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 4 cut(s) 94, 407, 665, 1271
NsiI ATGCAT 2 cut(s) 89, 1682
NspI RCATGY 7 cut(s) 87, 419, 1167, 1300, 1559, 1672, 1684
PaeR7I CTCGAG 1 cut(s) 428
PagI TCATGA 1 cut(s) 1633
PciSI GCTCTTC 1 cut(s) 1624
PcsI WCGNNNNNNNCGW 1 cut(s) 1328
PdmI GAANNNNTTC 2 cut(s) 926, 1050
PfeI GAWTC 2 cut(s) 1171, 1762
PflFI GACNNNGTC 1 cut(s) 1393
PflMI CCANNNNNTGG 3 cut(s) 694, 738, 864
PfoI TCCNGGA 1 cut(s) 399
PsiI TTATAA 2 cut(s) 378, 774
Psp1406I AACGTT 1 cut(s) 852
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 2 cut(s) 169, 685
PspXI VCTCGAGB 1 cut(s) 428
PsyI GACNNNGTC 1 cut(s) 1393
PvuII CAGCTG 1 cut(s) 861
RsaI GTAC 6 cut(s) 222, 743, 822, 1115, 1262, 1295
RsaNI GTAC 6 cut(s) 221, 742, 821, 1114, 1261, 1294
RseI CAYNNNNRTG 3 cut(s) 92, 645, 749
SapI GCTCTTC 1 cut(s) 1624
SaqAI TTAA 2 cut(s) 365, 533
Sau3AI GATC 4 cut(s) 310, 1197, 1569, 1732
Sau96I GGNCC 2 cut(s) 169, 685
ScrFI CCNGG 1 cut(s) 401
SfaNI GCATC 5 cut(s) 96, 249, 560, 1412, 1541
Sfr274I CTCGAG 1 cut(s) 428
SinI GGWCC 2 cut(s) 169, 685
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 3 cut(s) 92, 645, 749
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SsiI CCGC 2 cut(s) 347, 423
SspI AATATT 1 cut(s) 591
SspMI CTAG 1 cut(s) 1445
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 1 cut(s) 1702
TaaI ACNGT 4 cut(s) 130, 515, 1066, 1651
TaiI ACGT 6 cut(s) 70, 855, 972, 1197, 1416, 1494
TaqI TCGA 9 cut(s) 64, 192, 354, 429, 480, 563, 973, 1561, 1622
TaqII GACCGA 2 cut(s) 113, 178
TatI WGTACW 2 cut(s) 1113, 1293
TfiI GAWTC 2 cut(s) 1171, 1762
Tru1I TTAA 2 cut(s) 365, 533
Tru9I TTAA 2 cut(s) 365, 533
TscAI CASTG 3 cut(s) 1069, 1440, 1656
TseFI GTSAC 4 cut(s) 94, 407, 665, 1271
Tsp45I GTSAC 4 cut(s) 94, 407, 665, 1271
TspGWI ACGGA 2 cut(s) 978, 1430
TspRI CASTG 3 cut(s) 1069, 1440, 1656
Tth111I GACNNNGTC 1 cut(s) 1393
Van91I CCANNNNNTGG 3 cut(s) 694, 738, 864
VpaK11BI GGWCC 2 cut(s) 169, 685
XapI RAATTY 4 cut(s) 200, 794, 1282, 1657
XceI RCATGY 7 cut(s) 87, 419, 1167, 1300, 1559, 1672, 1684
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XhoI CTCGAG 1 cut(s) 428
XmnI GAANNNNTTC 2 cut(s) 926, 1050
XspI CTAG 1 cut(s) 1445
ZraI GACGTC 2 cut(s) 68, 1492
Zsp2I ATGCAT 2 cut(s) 89, 1682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.