Rorug02G0483900

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000768
Physical Location & Seq
Forward (+)
61367218 .. 61371557
4340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0483900.1

Sequence Viewer

Length: 1095 bp
ATGGCTATGCATGTTAGCAGTGCAGGGTTTTCTATTTTCAGTCACAGGAGAGTTAATAGAGTCAGAGCTGTTGCTTCTGAAAATGTGAGCATAGAGGAACAGAAGGTGAAGTTGGGGGCTTCTGAGTTGAAGGTGACAAAGCTTGGGATTGGAGCTTGGTCTTGGGGTGACACCAGTTATTGGAATAACTTTGAATGGGATGATAGGAAGATGAAGGCTGCTAAGAATGCGTTTGATGCCAGCGTTGATGGTGGCATAACCTTCTTTGATACTGCTGAAGTTTATGGCTCCAGGGCTTCTTTCGGTGCTATAAATTCTGAAACTTTACTAGGAAGATTTATCAAGGAAAGGAAAGAAAAGGATCCAGAAGTGGAGGTTGCTGTTGCAACCAAATTCGCAGCTTTGCCTTGGAGGCTGGGTCGGCAGAGCGTCCTCTCTGCCCTCAAGGATTCCCTCAGTCGCCTCGGTCTTTCTTCAGTAGAACTGTATCAACTCCACTGGCCAGGAGTATGGGGAAATGAAGGATACCTTGATGGTCTTGGAGATGCTGTTGAGCAAGGCCTTGTGAAGGCAGTTGGTGTCTCAAACTATAGAGAAAAGAGATTGCGTGATGCATACGAGAAACTCAAAAAGAGAGGTATCCCACTAGCATCAAACCAAGTGAATTACAGCCTCATATACAGGGCACCAGAGGAGAATGGAGTTAAGGCTACCTGTGACGAACTTGGGATCACTTTGATTGCCTATTCACCTATTGCTCAAGGTGTTCTTACAGGAAAGTATACACCTGAAAATATTCCAACTGGCCCTCGAGGCCAGATTTACACTCGTGATTTTCTTACAAAGCTCCAACCTCTGCTTAACAGAATCAAGGAAATAGGAGAGAAGTACAGTAAAACACCTACACAGGTAGCCTTAAACTGGCTAATAACCCAGGACAATGTCGTGCCAATTCCAGGAGCCAAAAATGCAGAACAGGCTATGGAATTTGCGGCTGCACTTGGATGGAAGCTCAACGATGATGAAGTAACTGAGTTGCGCTCTTTGGCTTCCGAGATTAAATCTGTAACTGGTTTCCCTGTTGAAAACTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

364

Amino Acids

40.27

Weight (kDa)

8.37

Isoelectric Point (pI)

26.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 47 - 349 1.4e-57 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 810
AccB1I GGYRCC 1 cut(s) 685
AccB7I CCANNNNNTGG 1 cut(s) 180
AccI GTMKAC 1 cut(s) 782
AciI CCGC 1 cut(s) 992
AclWI GGATC 3 cut(s) 356, 369, 737
AcoI YGGCCR 1 cut(s) 500
AcsI RAATTY 3 cut(s) 313, 392, 986
AcuI CTGAAG 2 cut(s) 297, 459
AfaI GTAC 1 cut(s) 890
AfiI CCNNNNNNNGG 4 cut(s) 180, 568, 921, 956
AgsI TTSAA 3 cut(s) 130, 194, 1085
AjnI CCWGG 4 cut(s) 290, 502, 933, 955
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 6 cut(s) 68, 142, 155, 401, 847, 1012
AluI AGCT 6 cut(s) 68, 142, 155, 401, 847, 1012
Alw26I GTCTC 1 cut(s) 586
AlwI GGATC 3 cut(s) 356, 369, 737
Ama87I CYCGRG 1 cut(s) 810
AoxI GGCC 4 cut(s) 500, 559, 805, 814
ApeKI GCWGC 3 cut(s) 218, 398, 995
ApoI RAATTY 3 cut(s) 313, 392, 986
Asp700I GAANNNNTTC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 1041
AspS9I GGNCC 1 cut(s) 806
AsuHPI GGTGA 4 cut(s) 118, 145, 179, 741
AvaI CYCGRG 1 cut(s) 810
BaeGI GKGCMC 1 cut(s) 688
BalI TGGCCA 1 cut(s) 502
BamHI GGATCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 685
BauI CACGAG 1 cut(s) 828
BbvI GCAGC 3 cut(s) 205, 410, 982
BccI CCATC 3 cut(s) 242, 527, 999
BciT130I CCWGG 4 cut(s) 292, 504, 935, 957
BciVI GTATCC 2 cut(s) 518, 650
BcoDI GTCTC 1 cut(s) 586
BfaI CTAG 2 cut(s) 329, 647
BfmI CTRYAG 1 cut(s) 589
BfuI GTATCC 2 cut(s) 518, 650
BglI GCCNNNNNGGC 2 cut(s) 412, 813
BisI GCNGC 4 cut(s) 219, 399, 993, 996
BlsI GCNGC 4 cut(s) 220, 400, 994, 997
Bme1390I CCNGG 4 cut(s) 292, 504, 935, 957
BmeT110I CYCGRG 1 cut(s) 810
BmgT120I GGNCC 1 cut(s) 806
BmiI GGNNCC 4 cut(s) 289, 363, 687, 961
BmrFI CCNGG 4 cut(s) 292, 504, 935, 957
BmsI GCATC 4 cut(s) 226, 535, 601, 659
BplI GAGNNNNNCTC 2 cut(s) 1025, 1057
BpmI CTGGAG 1 cut(s) 274
BpuEI CTTGAG 2 cut(s) 428, 744
BsaJI CCNNGG 4 cut(s) 291, 407, 463, 933
BsaXI ACNNNNNCTCC 4 cut(s) 403, 433, 534, 564
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 568, 921, 956
Bse1I ACTGG 5 cut(s) 174, 503, 808, 926, 1075
BseBI CCWGG 4 cut(s) 292, 504, 935, 957
BseDI CCNNGG 4 cut(s) 291, 407, 463, 933
BseGI GGATG 2 cut(s) 205, 1010
BseLI CCNNNNNNNGG 4 cut(s) 180, 568, 921, 956
BseMII CTCAG 3 cut(s) 114, 469, 1023
BseNI ACTGG 5 cut(s) 174, 503, 808, 926, 1075
BseRI GAGGAG 1 cut(s) 707
BseSI GKGCMC 1 cut(s) 688
BseXI GCAGC 3 cut(s) 205, 410, 982
BseYI CCCAGC 1 cut(s) 415
BsgI GTGCAG 2 cut(s) 42, 981
BshFI GGCC 4 cut(s) 502, 561, 807, 816
BshNI GGYRCC 1 cut(s) 685
BsiHKCI CYCGRG 1 cut(s) 810
BslI CCNNNNNNNGG 4 cut(s) 180, 568, 921, 956
BsmAI GTCTC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 4 cut(s) 502, 561, 807, 816
BsoBI CYCGRG 1 cut(s) 810
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 2 cut(s) 361, 729
BspACI CCGC 1 cut(s) 992
BspANI GGCC 4 cut(s) 502, 561, 807, 816
BspCNI CTCAG 3 cut(s) 115, 468, 1024
BspLI GGNNCC 4 cut(s) 289, 363, 687, 961
BspPI GGATC 3 cut(s) 356, 369, 737
BspT107I GGYRCC 1 cut(s) 685
BsrI ACTGG 5 cut(s) 174, 503, 808, 926, 1075
BssECI CCNNGG 4 cut(s) 291, 407, 463, 933
BssMI GATC 2 cut(s) 361, 729
BssNAI GTATAC 1 cut(s) 783
BssSI CACGAG 1 cut(s) 828
BssT1I CCWWGG 1 cut(s) 407
Bst1107I GTATAC 1 cut(s) 783
Bst2BI CACGAG 1 cut(s) 828
Bst2UI CCWGG 4 cut(s) 292, 504, 935, 957
Bst4CI ACNGT 2 cut(s) 486, 893
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 4 cut(s) 123, 222, 455, 1032
BstENI CCTNNNNNAGG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 205, 1010
BstHHI GCGC 1 cut(s) 1041
BstKTI GATC 2 cut(s) 364, 732
BstMAI GTCTC 1 cut(s) 586
BstMBI GATC 2 cut(s) 361, 729
BstMWI GCNNNNNNNGC 7 cut(s) 227, 236, 412, 421, 813, 968, 977
BstNI CCWGG 4 cut(s) 292, 504, 935, 957
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 4 cut(s) 290, 502, 933, 955
BstSFI CTRYAG 1 cut(s) 589
BstSLI GKGCMC 1 cut(s) 688
BstV1I GCAGC 3 cut(s) 205, 410, 982
BstX2I RGATCY 1 cut(s) 361
BstXI CCANNNNNNTGG 1 cut(s) 510
BstYI RGATCY 1 cut(s) 361
BstZ17I GTATAC 1 cut(s) 783
BsuI GTATCC 2 cut(s) 518, 650
BsuRI GGCC 4 cut(s) 502, 561, 807, 816
BtsCI GGATG 2 cut(s) 205, 1010
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 25, 496
Cac8I GCNNGC 1 cut(s) 241
CfoI GCGC 1 cut(s) 1041
Cfr13I GGNCC 1 cut(s) 806
CseI GACGC 1 cut(s) 418
Csp6I GTAC 1 cut(s) 889
CviAII CATG 1 cut(s) 11
CviQI GTAC 1 cut(s) 889
DdeI CTNAG 4 cut(s) 123, 222, 455, 1032
DpnI GATC 2 cut(s) 363, 731
DpnII GATC 2 cut(s) 361, 729
EaeI YGGCCR 1 cut(s) 500
Eco130I CCWWGG 1 cut(s) 407
Eco147I AGGCCT 1 cut(s) 561
Eco57I CTGAAG 2 cut(s) 297, 459
Eco88I CYCGRG 1 cut(s) 810
EcoNI CCTNNNNNAGG 1 cut(s) 566
EcoRII CCWGG 4 cut(s) 290, 502, 933, 955
EcoT14I CCWWGG 1 cut(s) 407
EcoT22I ATGCAT 2 cut(s) 12, 616
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 1 cut(s) 14
FalI AAGNNNNNCTT 4 cut(s) 513, 545, 753, 785
FatI CATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 782
Fnu4HI GCNGC 4 cut(s) 219, 399, 993, 996
FokI GGATG 2 cut(s) 212, 1017
Fsp4HI GCNGC 4 cut(s) 219, 399, 993, 996
FspBI CTAG 2 cut(s) 329, 647
GlaI GCGC 1 cut(s) 1040
GluI GCNGC 4 cut(s) 219, 399, 993, 996
GsaI CCCAGC 1 cut(s) 419
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 4 cut(s) 502, 561, 807, 816
HgaI GACGC 1 cut(s) 418
HhaI GCGC 1 cut(s) 1041
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 1 cut(s) 1039
HinP1I GCGC 1 cut(s) 1039
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 3 cut(s) 60, 449, 867
HphI GGTGA 4 cut(s) 118, 145, 179, 741
Hpy166II GTNNAC 1 cut(s) 783
Hpy188I TCNGA 5 cut(s) 65, 79, 124, 319, 1054
Hpy188III TCNNGA 2 cut(s) 365, 830
Hpy8I GTNNAC 1 cut(s) 783
HpyAV CCTTC 6 cut(s) 97, 124, 208, 271, 515, 562
HpyCH4III ACNGT 2 cut(s) 486, 893
HpyCH4V TGCA 6 cut(s) 10, 23, 386, 614, 971, 998
HpyF10VI GCNNNNNNNGC 7 cut(s) 227, 236, 412, 421, 813, 968, 977
HpyF3I CTNAG 4 cut(s) 123, 222, 455, 1032
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 1 cut(s) 1039
Kzo9I GATC 2 cut(s) 361, 729
LmnI GCTCC 4 cut(s) 152, 293, 852, 959
Lsp1109I GCAGC 3 cut(s) 205, 410, 982
LweI GCATC 4 cut(s) 226, 535, 601, 659
MaeI CTAG 2 cut(s) 329, 647
MaeIII GTNAC 6 cut(s) 41, 133, 167, 716, 1027, 1066
MalI GATC 2 cut(s) 363, 731
MboI GATC 2 cut(s) 361, 729
MboII GAAGA 3 cut(s) 220, 345, 465
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 688
MlsI TGGCCA 1 cut(s) 502
MluCI AATT 5 cut(s) 313, 392, 664, 951, 986
MluNI TGGCCA 1 cut(s) 502
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 2 cut(s) 824, 874
Mox20I TGGCCA 1 cut(s) 502
Mph1103I ATGCAT 2 cut(s) 12, 616
MroXI GAANNNNTTC 1 cut(s) 795
MscI TGGCCA 1 cut(s) 502
MseI TTAA 5 cut(s) 54, 705, 861, 917, 1059
MslI CAYNNNNRTG 1 cut(s) 1003
Msp20I TGGCCA 1 cut(s) 502
MspR9I CCNGG 4 cut(s) 292, 504, 935, 957
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 4 cut(s) 292, 504, 935, 957
MwoI GCNNNNNNNGC 7 cut(s) 227, 236, 412, 421, 813, 968, 977
NdeII GATC 2 cut(s) 361, 729
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 4 cut(s) 289, 363, 687, 961
NmuCI GTSAC 4 cut(s) 41, 133, 167, 716
NsiI ATGCAT 2 cut(s) 12, 616
NspI RCATGY 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 810
PceI AGGCCT 1 cut(s) 561
PctI GAATGC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 2 cut(s) 449, 867
PflFI GACNNNGTC 1 cut(s) 941
PflMI CCANNNNNTGG 1 cut(s) 180
PfoI TCCNGGA 1 cut(s) 955
PkrI GCNGC 4 cut(s) 220, 400, 994, 997
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp6I CCWGG 4 cut(s) 290, 502, 933, 955
PspFI CCCAGC 1 cut(s) 415
PspGI CCWGG 4 cut(s) 290, 502, 933, 955
PspN4I GGNNCC 4 cut(s) 289, 363, 687, 961
PspPI GGNCC 1 cut(s) 806
PspXI VCTCGAGB 1 cut(s) 810
PsuI RGATCY 1 cut(s) 361
PsyI GACNNNGTC 1 cut(s) 941
RsaI GTAC 1 cut(s) 890
RsaNI GTAC 1 cut(s) 889
RseI CAYNNNNRTG 1 cut(s) 1003
SaqAI TTAA 5 cut(s) 54, 705, 861, 917, 1059
SatI GCNGC 4 cut(s) 219, 399, 993, 996
Sau3AI GATC 2 cut(s) 361, 729
Sau96I GGNCC 1 cut(s) 806
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 4 cut(s) 292, 504, 935, 957
SduI GDGCHC 1 cut(s) 688
SfaNI GCATC 4 cut(s) 226, 535, 601, 659
SfcI CTRYAG 1 cut(s) 589
SfiI GGCCNNNNNGGCC 1 cut(s) 813
Sfr274I CTCGAG 1 cut(s) 810
SlaI CTCGAG 1 cut(s) 810
SmiMI CAYNNNNRTG 1 cut(s) 1003
SmlI CTYRAG 3 cut(s) 443, 759, 810
SmoI CTYRAG 3 cut(s) 443, 759, 810
Sse9I AATT 5 cut(s) 313, 392, 664, 951, 986
SseBI AGGCCT 1 cut(s) 561
SsiI CCGC 1 cut(s) 992
SspI AATATT 1 cut(s) 796
SspMI CTAG 2 cut(s) 329, 647
StuI AGGCCT 1 cut(s) 561
StyD4I CCNGG 4 cut(s) 290, 502, 933, 955
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 2 cut(s) 486, 893
TaqI TCGA 1 cut(s) 811
TaqII GACCGA 1 cut(s) 455
TasI AATT 5 cut(s) 313, 392, 664, 951, 986
TatI WGTACW 1 cut(s) 888
TauI GCSGC 1 cut(s) 995
TfiI GAWTC 2 cut(s) 449, 867
Tru1I TTAA 5 cut(s) 54, 705, 861, 917, 1059
Tru9I TTAA 5 cut(s) 54, 705, 861, 917, 1059
TscAI CASTG 2 cut(s) 25, 503
TseFI GTSAC 4 cut(s) 41, 133, 167, 716
TseI GCWGC 3 cut(s) 218, 398, 995
Tsp45I GTSAC 4 cut(s) 41, 133, 167, 716
TspDTI ATGAA 3 cut(s) 227, 534, 1038
TspRI CASTG 2 cut(s) 25, 503
Tth111I GACNNNGTC 1 cut(s) 941
Van91I CCANNNNNTGG 1 cut(s) 180
XagI CCTNNNNNAGG 1 cut(s) 566
XapI RAATTY 3 cut(s) 313, 392, 986
XceI RCATGY 1 cut(s) 14
XhoI CTCGAG 1 cut(s) 810
XmiI GTMKAC 1 cut(s) 782
XmnI GAANNNNTTC 1 cut(s) 795
XspI CTAG 2 cut(s) 329, 647
Zsp2I ATGCAT 2 cut(s) 12, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.