Rmu_sc0005946.1_g000007

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005946.1
OG0000768
Physical Location & Seq
Forward (+)
54470 .. 56313
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005946.1_g000007.1.cds

Sequence Viewer

Length: 996 bp
atgatgagtctgtgcgaagcttcataccttggtattgaaggagaaaccctcttggatgaggcccttgcattcaccagcatgcacctaaagaatctcagcagattgcatgttactcagggcaaaggtgtattagagcaagtgagtcatgcattggagatgccattgcaccacagaatgcaaagactagaagctagatggtggtggaaggatacggggttagcaaagaagttgtccttcagcaaagacagactgatagagttgttcttttggtcagttggtatagcatttgaacctcaactcagcaatcttagaaaagatataactaaaatcggtgctctaatagcgacaatcgatgatgtctatgatctttatgcagtacgcggccatatggtgatgatgatttgtgctctcacatctttcttgcatattgattctcagtgggtagatatgtgcaaagcttggttaatggaggcaaagtggcgtcacaacaagtacacacctacatttgaagaatatcttgccaatgcatggatatcagcgtccggagtggtcattctagtccacacctactttctactgaatcaaaatatctcagatgaagcacttaaatgcttagagaatcaccatgatctcttgcgttggtcgtctcttatttttcggctctcaaatgatttggctacttcaaaggtagaactagagagaggagaaactgcaacttcaatatcctgcatcagatgtgatggtgttgtttctgatgaggaatctgctcgcaaatatattagtaatttgattgagaatagttggaagaagatgaacaaagatggactactatttggtgctagtagagcttcttctccattcacaaaggaatttgtagcagcagcaacgaaccttgctcgaattgcccaatgcatttaccaatatggagacgggattggtgccccggacgaaagagtaaagaactggatcctagcagtgattgtacaacctgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

331

Amino Acids

37.67

Weight (kDa)

6.27

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 938
AccB7I CCANNNNNTGG 1 cut(s) 528
AccII CGCG 1 cut(s) 381
AccIII TCCGGA 1 cut(s) 542
AciI CCGC 1 cut(s) 381
AclWI GGATC 2 cut(s) 961, 974
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 1 cut(s) 869
AcuI CTGAAG 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 481
AfaI GTAC 3 cut(s) 378, 494, 984
AfiI CCNNNNNNNGG 1 cut(s) 528
AgsI TTSAA 5 cut(s) 38, 290, 509, 684, 720
AluBI AGCT 4 cut(s) 20, 191, 458, 848
AluI AGCT 4 cut(s) 20, 191, 458, 848
Alw21I GWGCWC 2 cut(s) 337, 409
Alw26I GTCTC 2 cut(s) 651, 921
AlwI GGATC 2 cut(s) 961, 974
Aor13HI TCCGGA 1 cut(s) 542
AoxI GGCC 2 cut(s) 60, 382
ApeKI GCWGC 2 cut(s) 878, 881
ApoI RAATTY 1 cut(s) 869
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 944
AsuHPI GGTGA 3 cut(s) 64, 403, 614
BaeGI GKGCMC 1 cut(s) 943
BamHI GGATCC 1 cut(s) 966
BanI GGYRCC 1 cut(s) 938
BarI GAAGNNNNNNTAC 2 cut(s) 835, 867
Bbv12I GWGCWC 2 cut(s) 337, 409
BbvI GCAGC 2 cut(s) 890, 893
BccI CCATC 3 cut(s) 189, 734, 815
BciVI GTATCC 1 cut(s) 202
BcnI CCSGG 1 cut(s) 944
BcoDI GTCTC 2 cut(s) 651, 921
BfaI CTAG 6 cut(s) 185, 192, 557, 695, 840, 971
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 3 cut(s) 382, 879, 882
BlsI GCNGC 3 cut(s) 383, 880, 883
Bme1390I CCNGG 1 cut(s) 944
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 2 cut(s) 940, 968
BmrFI CCNGG 1 cut(s) 944
BmsI GCATC 2 cut(s) 147, 738
BplI GAGNNNNNCTC 2 cut(s) 33, 65
BpuMI CCSGG 1 cut(s) 944
Bsa29I ATCGAT 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 28, 942
BsaWI WCCGGW 1 cut(s) 542
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse1I ACTGG 1 cut(s) 968
Bse3DI GCAATG 1 cut(s) 161
BseAI TCCGGA 1 cut(s) 542
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 28, 942
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 5 cut(s) 109, 128, 313, 449, 606
BseNI ACTGG 1 cut(s) 968
BseRI GAGGAG 1 cut(s) 717
BseSI GKGCMC 1 cut(s) 943
BseXI GCAGC 2 cut(s) 890, 893
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 2 cut(s) 62, 384
BshNI GGYRCC 1 cut(s) 938
BshVI ATCGAT 1 cut(s) 351
BsiHKAI GWGCWC 2 cut(s) 337, 409
BsiSI CCGG 2 cut(s) 543, 944
BslI CCNNNNNNNGG 1 cut(s) 528
BsmAI GTCTC 2 cut(s) 651, 921
BsmBI CGTCTC 2 cut(s) 651, 921
BsmI GAATGC 2 cut(s) 68, 180
BsnI GGCC 2 cut(s) 62, 384
Bsp1286I GDGCHC 3 cut(s) 337, 409, 943
Bsp13I TCCGGA 1 cut(s) 542
Bsp1407I TGTACA 1 cut(s) 982
Bsp143I GATC 3 cut(s) 364, 628, 966
BspACI CCGC 1 cut(s) 381
BspANI GGCC 2 cut(s) 62, 384
BspCNI CTCAG 5 cut(s) 108, 127, 312, 448, 605
BspDI ATCGAT 1 cut(s) 351
BspEI TCCGGA 1 cut(s) 542
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 940, 968
BspPI GGATC 2 cut(s) 961, 974
BspT107I GGYRCC 1 cut(s) 938
BsrDI GCAATG 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 982
BsrI ACTGG 1 cut(s) 968
BssECI CCNNGG 2 cut(s) 28, 942
BssMI GATC 3 cut(s) 364, 628, 966
BssNI GRCGYC 1 cut(s) 481
BssT1I CCWWGG 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 481
BstAUI TGTACA 1 cut(s) 982
BstC8I GCNNGC 2 cut(s) 80, 769
BstDEI CTNAG 7 cut(s) 95, 114, 299, 308, 435, 592, 613
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 381
BstKTI GATC 3 cut(s) 367, 631, 969
BstMAI GTCTC 2 cut(s) 651, 921
BstMBI GATC 3 cut(s) 364, 628, 966
BstMWI GCNNNNNNNGC 3 cut(s) 341, 845, 902
BstNSI RCATGY 2 cut(s) 82, 110
BstSCI CCNGG 1 cut(s) 942
BstSLI GKGCMC 1 cut(s) 943
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 890, 893
BstX2I RGATCY 1 cut(s) 966
BstYI RGATCY 1 cut(s) 966
Bsu15I ATCGAT 1 cut(s) 351
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 2 cut(s) 62, 384
BsuTUI ATCGAT 1 cut(s) 351
BtsCI GGATG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 981
BtsIMutI CAGTG 2 cut(s) 443, 981
Cac8I GCNNGC 2 cut(s) 80, 769
Cfr13I GGNCC 1 cut(s) 61
ClaI ATCGAT 1 cut(s) 351
CseI GACGC 2 cut(s) 470, 528
Csp6I GTAC 3 cut(s) 377, 493, 983
CviAII CATG 5 cut(s) 79, 107, 146, 528, 626
CviJI RGCY 8 cut(s) 20, 62, 191, 384, 458, 661, 677, 848
CviKI_1 RGCY 8 cut(s) 20, 62, 191, 384, 458, 661, 677, 848
CviQI GTAC 3 cut(s) 377, 493, 983
DdeI CTNAG 7 cut(s) 95, 114, 299, 308, 435, 592, 613
DpnI GATC 3 cut(s) 366, 630, 968
DpnII GATC 3 cut(s) 364, 628, 966
EaeI YGGCCR 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 28
Eco32I GATATC 1 cut(s) 534
Eco57I CTGAAG 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 61
EcoRV GATATC 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 28
EcoT22I ATGCAT 3 cut(s) 151, 529, 914
ErhI CCWWGG 1 cut(s) 28
Esp3I CGTCTC 2 cut(s) 651, 921
FaeI CATG 5 cut(s) 82, 110, 149, 531, 629
FalI AAGNNNNNCTT 4 cut(s) 218, 250, 501, 533
FatI CATG 5 cut(s) 78, 106, 145, 527, 625
FauNDI CATATG 1 cut(s) 387
Fnu4HI GCNGC 3 cut(s) 382, 879, 882
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 382, 879, 882
FspBI CTAG 6 cut(s) 185, 192, 557, 695, 840, 971
GluI GCNGC 3 cut(s) 382, 879, 882
HaeIII GGCC 2 cut(s) 62, 384
HapII CCGG 2 cut(s) 543, 944
HgaI GACGC 2 cut(s) 470, 528
Hin1I GRCGYC 1 cut(s) 481
Hin1II CATG 5 cut(s) 82, 110, 149, 531, 629
HindIII AAGCTT 2 cut(s) 18, 456
HinfI GANTC 7 cut(s) 7, 91, 142, 431, 580, 619, 761
HpaII CCGG 2 cut(s) 543, 944
HphI GGTGA 3 cut(s) 64, 403, 614
Hpy166II GTNNAC 2 cut(s) 495, 562
Hpy188I TCNGA 3 cut(s) 595, 734, 754
Hpy188III TCNNGA 1 cut(s) 543
Hpy8I GTNNAC 2 cut(s) 495, 562
HpyAV CCTTC 3 cut(s) 32, 199, 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 845, 902
HpyF3I CTNAG 7 cut(s) 95, 114, 299, 308, 435, 592, 613
Hsp92I GRCGYC 1 cut(s) 481
Hsp92II CATG 5 cut(s) 82, 110, 149, 531, 629
Kpn2I TCCGGA 1 cut(s) 542
Kzo9I GATC 3 cut(s) 364, 628, 966
LpnPI CCDG 6 cut(s) 88, 101, 556, 739, 949, 957
Lsp1109I GCAGC 2 cut(s) 890, 893
LweI GCATC 2 cut(s) 147, 738
MaeI CTAG 6 cut(s) 185, 192, 557, 695, 840, 971
MaeIII GTNAC 2 cut(s) 109, 482
MalI GATC 3 cut(s) 366, 630, 968
MboI GATC 3 cut(s) 364, 628, 966
MboII GAAGA 4 cut(s) 521, 817, 820, 843
MflI RGATCY 1 cut(s) 966
MhlI GDGCHC 3 cut(s) 337, 409, 943
MluCI AATT 3 cut(s) 784, 869, 900
MlyI GAGTC 2 cut(s) 16, 151
MmeI TCCRAC 1 cut(s) 782
MnlI CCTC 6 cut(s) 52, 59, 303, 463, 695, 751
Mph1103I ATGCAT 3 cut(s) 151, 529, 914
MroI TCCGGA 1 cut(s) 542
MseI TTAA 3 cut(s) 464, 606, 994
MslI CAYNNNNRTG 2 cut(s) 77, 607
MspI CCGG 2 cut(s) 543, 944
MspR9I CCNGG 1 cut(s) 944
Mva1269I GAATGC 2 cut(s) 68, 180
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 3 cut(s) 341, 845, 902
NciI CCSGG 1 cut(s) 944
NdeI CATATG 1 cut(s) 387
NdeII GATC 3 cut(s) 364, 628, 966
NlaIII CATG 5 cut(s) 82, 110, 149, 531, 629
NlaIV GGNNCC 2 cut(s) 940, 968
NmuCI GTSAC 1 cut(s) 482
NsiI ATGCAT 3 cut(s) 151, 529, 914
NspI RCATGY 2 cut(s) 82, 110
PaeI GCATGC 1 cut(s) 82
PctI GAATGC 2 cut(s) 68, 180
PfeI GAWTC 5 cut(s) 91, 431, 580, 619, 761
PflMI CCANNNNNTGG 1 cut(s) 528
PkrI GCNGC 3 cut(s) 383, 880, 883
PleI GAGTC 2 cut(s) 15, 150
PpsI GAGTC 2 cut(s) 15, 150
PspN4I GGNNCC 2 cut(s) 940, 968
PspPI GGNCC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 966
RsaI GTAC 3 cut(s) 378, 494, 984
RsaNI GTAC 3 cut(s) 377, 493, 983
RseI CAYNNNNRTG 2 cut(s) 77, 607
SaqAI TTAA 3 cut(s) 464, 606, 994
SatI GCNGC 3 cut(s) 382, 879, 882
Sau3AI GATC 3 cut(s) 364, 628, 966
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 2 cut(s) 16, 151
ScrFI CCNGG 1 cut(s) 944
SduI GDGCHC 3 cut(s) 337, 409, 943
SfaNI GCATC 2 cut(s) 147, 738
SmiMI CAYNNNNRTG 2 cut(s) 77, 607
SphI GCATGC 1 cut(s) 82
Sse9I AATT 3 cut(s) 784, 869, 900
SsiI CCGC 1 cut(s) 381
SspMI CTAG 6 cut(s) 185, 192, 557, 695, 840, 971
StyD4I CCNGG 1 cut(s) 942
StyI CCWWGG 1 cut(s) 28
TaqI TCGA 2 cut(s) 351, 898
TasI AATT 3 cut(s) 784, 869, 900
TatI WGTACW 2 cut(s) 492, 982
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 5 cut(s) 91, 431, 580, 619, 761
Tru1I TTAA 3 cut(s) 464, 606, 994
Tru9I TTAA 3 cut(s) 464, 606, 994
TscAI CASTG 2 cut(s) 443, 981
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 2 cut(s) 878, 881
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 3 cut(s) 12, 612, 827
TspRI CASTG 2 cut(s) 443, 981
Van91I CCANNNNNTGG 1 cut(s) 528
XapI RAATTY 1 cut(s) 869
XceI RCATGY 2 cut(s) 82, 110
XspI CTAG 6 cut(s) 185, 192, 557, 695, 840, 971
Zsp2I ATGCAT 3 cut(s) 151, 529, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.