RchiOBHm_Chr2g0160561

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000768
Physical Location & Seq
Reverse (-)
76379889 .. 76384918
5030 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52899

Sequence Viewer

Length: 1713 bp
ATGTCTAACCAATGCTTAGCGAGCAGCGGTCGCACTGCTGCTCAAACTTCACATCTGGATGTTAAAAGACTAACAGCAAATTACAAGCCAAGTATTTGGAGTTGCGATTTTCTTCAGTCGTTACAGATTGATGATCGTAATCATAAAGAAGTCTACGGAGATAATAGGTGGAAGTTGATGGAGGAGGATCTGAAAAATATGATTGATGCAGAGTCACTAGAGACTACACTTGAATTGATTGATGACATCCATCGACTAGGTTTGGGACACCGATTTGAAGCCAGTATAAAAGAAACCCTTGATAGAGTTTTAAAGAATCTTGACCAAATAACAGACGAGGATACTCCAAATCTTCACCTCACTGCTCTAAGCTTTAGGCTCCTCAGACATCATGGGTTTCAAGTCTCCCAAGATGTTTTCAAATTTTTCATGGATTGTGACGGCAACTTTAAGGATTGCCATTGCAAAGATGTCAAAGGCATGCTAAGTCTGTATGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCCTCTTGGATGAGGCTCTTGCATTCACCAGCCTGCACCTAAAGAACCTCAGTAGATTGCATGTTACTCAAGACAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGATTAGAAGCTAGATGGTTTATTGAGGTATACAGTAAAAAGGCATATGAAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATATGGTGCAACAAACATACCAAAGAGATTTTAAAGATATTTCAAGGTGGTGGAAGGATACGGGGTTAGCAAAGAAGTTGTCCTTCAGCAGAGATAGACTGATGGAGTTGTTCCTTTGGTCAGTTGGTATAGTGTCTGAACCTCAATTCAGCGATGTTAGGAAAGGGATAACTAAAGCCAGTGCTCTAATAACGACTATTGATGATGTCTATGATGTTTATGGTACTTTGGATGAACTACAGCTATTCACATCTGCTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTACGAAACTTTGAAGGAGCAAGGAGTGAACGTTCTTCCTTACCTGACAAAAGCTTGGGCTGATATGTGCAAATCTTGGTTAACGGAGGCAGAGTGGCGTCACAACAAGTACACACCTACATTTGACGAATATCTTGCCAATGCATGGATATCAGTATCCGGGGTGGTCATTCTGGTCCATACCTACTTTCTACTCAATCAAAATATCTCAGATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCATCTGTTATTTTTCGGCTCTTAAATGATTTGGCTACTTCGAAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCCAGCATCAAACGTGGTGGTGTTGTTTCTGATGAGGAATCTGCTCACAAATATATTAGTAATTTGATTGAGAGTACTTGGAAGAAGATGAACAAAGATGGACTAATATTTGGTGCCAATAGTGCTTCTTCTCCATTCACAAAAGAATTTGTAGCAGCAGCAACAAACCTTGCTCGAATTGCCCAATGTATCTACCAATATGGAGACGGGATTGGTGCCCCGGATAAAAGAGTAAAGAACCGGATCCTAGCAGTGATTGTACAACCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

570

Amino Acids

65.43

Weight (kDa)

5.62

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 211 2.5e-48 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 268 - 509 8.8e-85 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 309 - 509 2.5e-55 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1553, 1655
AccB7I CCANNNNNTGG 1 cut(s) 1245
AccI GTMKAC 2 cut(s) 153, 690
AciI CCGC 1 cut(s) 27
AclI AACGTT 1 cut(s) 1131
AclWI GGATC 3 cut(s) 195, 1678, 1691
AcoI YGGCCR 1 cut(s) 1358
AcsI RAATTY 4 cut(s) 422, 728, 1035, 1586
AcuI CTGAAG 3 cut(s) 98, 817, 1076
AcyI GRCGYC 1 cut(s) 1198
AfaI GTAC 4 cut(s) 973, 1211, 1516, 1701
AfiI CCNNNNNNNGG 1 cut(s) 1245
AloI GAACNNNNNNTCC 2 cut(s) 1116, 1148
AluBI AGCT 8 cut(s) 372, 500, 671, 739, 991, 1054, 1060, 1154
AluI AGCT 8 cut(s) 372, 500, 671, 739, 991, 1054, 1060, 1154
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 3 cut(s) 215, 409, 1638
AlwI GGATC 3 cut(s) 195, 1678, 1691
AoxI GGCC 1 cut(s) 1358
ApeKI GCWGC 4 cut(s) 24, 38, 1595, 1598
ApoI RAATTY 4 cut(s) 422, 728, 1035, 1586
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AspS9I GGNCC 1 cut(s) 1276
AsuC2I CCSGG 2 cut(s) 1261, 1661
AsuHPI GGTGA 4 cut(s) 347, 544, 1331, 1433
AsuII TTCGAA 1 cut(s) 1400
AvaII GGWCC 1 cut(s) 1276
BaeGI GKGCMC 1 cut(s) 1660
BalI TGGCCA 1 cut(s) 1360
BamHI GGATCC 1 cut(s) 1683
BanI GGYRCC 2 cut(s) 1553, 1655
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 4 cut(s) 25, 36, 1607, 1610
BccI CCATC 7 cut(s) 172, 258, 669, 844, 1008, 1369, 1532
BceAI ACGGC 1 cut(s) 457
BcgI CGANNNNNNTGC 2 cut(s) 1217, 1251
BciVI GTATCC 3 cut(s) 334, 799, 1267
BcnI CCSGG 2 cut(s) 1261, 1661
BcoDI GTCTC 3 cut(s) 215, 409, 1638
BfaI CTAG 6 cut(s) 218, 257, 672, 740, 1412, 1688
BfmI CTRYAG 1 cut(s) 986
BfuI GTATCC 3 cut(s) 334, 799, 1267
BisI GCNGC 4 cut(s) 25, 39, 1596, 1599
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 4 cut(s) 26, 40, 1597, 1600
BmcAI AGTACT 1 cut(s) 1516
Bme1390I CCNGG 2 cut(s) 1261, 1661
Bme18I GGWCC 1 cut(s) 1276
BmgT120I GGNCC 1 cut(s) 1276
BmiI GGNNCC 4 cut(s) 380, 1555, 1657, 1685
BmrFI CCNGG 2 cut(s) 1261, 1661
BmsI GCATC 3 cut(s) 196, 627, 1455
BplI GAGNNNNNCTC 2 cut(s) 513, 545
Bpu1102I GCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 1400
BpuEI CTTGAG 1 cut(s) 579
BpuMI CCSGG 2 cut(s) 1261, 1661
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 1198
BsaJI CCNNGG 3 cut(s) 508, 1260, 1659
BsaWI WCCGGW 1 cut(s) 1680
BsaXI ACNNNNNCTCC 4 cut(s) 1116, 1146, 1178, 1208
Bsc4I CCNNNNNNNGG 1 cut(s) 1245
Bse1I ACTGG 2 cut(s) 282, 927
Bse3DI GCAATG 2 cut(s) 460, 641
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 508, 1260, 1659
BseGI GGATG 5 cut(s) 64, 246, 541, 985, 1024
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 1245
BseMI GCAATG 2 cut(s) 460, 641
BseMII CTCAG 3 cut(s) 397, 589, 1323
BseNI ACTGG 2 cut(s) 282, 927
BseRI GAGGAG 2 cut(s) 197, 371
BseSI GKGCMC 1 cut(s) 1660
BseXI GCAGC 4 cut(s) 25, 36, 1607, 1610
BsgI GTGCAG 1 cut(s) 545
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 1360
BshNI GGYRCC 2 cut(s) 1553, 1655
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 934
BsiSI CCGG 3 cut(s) 1260, 1661, 1681
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 1245
BsmAI GTCTC 3 cut(s) 215, 409, 1638
BsmBI CGTCTC 1 cut(s) 1638
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 3 cut(s) 548, 660, 1030
BsnI GGCC 1 cut(s) 1360
Bsp119I TTCGAA 1 cut(s) 1400
Bsp1286I GDGCHC 2 cut(s) 934, 1660
Bsp1407I TGTACA 1 cut(s) 1699
Bsp143I GATC 4 cut(s) 133, 187, 1345, 1683
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 1360
BspCNI CTCAG 3 cut(s) 396, 588, 1322
BspLI GGNNCC 4 cut(s) 380, 1555, 1657, 1685
BspPI GGATC 3 cut(s) 195, 1678, 1691
BspT104I TTCGAA 1 cut(s) 1400
BspT107I GGYRCC 2 cut(s) 1553, 1655
BsrDI GCAATG 2 cut(s) 460, 641
BsrGI TGTACA 1 cut(s) 1699
BsrI ACTGG 2 cut(s) 282, 927
BssECI CCNNGG 3 cut(s) 508, 1260, 1659
BssMI GATC 4 cut(s) 133, 187, 1345, 1683
BssNAI GTATAC 1 cut(s) 691
BssNI GRCGYC 1 cut(s) 1198
BssT1I CCWWGG 1 cut(s) 508
Bst1107I GTATAC 1 cut(s) 691
Bst4CI ACNGT 2 cut(s) 695, 1087
BstACI GRCGYC 1 cut(s) 1198
BstAUI TGTACA 1 cut(s) 1699
BstBI TTCGAA 1 cut(s) 1400
BstC8I GCNNGC 3 cut(s) 22, 482, 560
BstDEI CTNAG 7 cut(s) 16, 368, 383, 485, 575, 1309, 1330
BstF5I GGATG 5 cut(s) 64, 246, 541, 985, 1024
BstKTI GATC 4 cut(s) 136, 190, 1348, 1686
BstMAI GTCTC 3 cut(s) 215, 409, 1638
BstMBI GATC 4 cut(s) 133, 187, 1345, 1683
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 4 cut(s) 21, 30, 1562, 1619
BstNSI RCATGY 2 cut(s) 484, 590
BstSCI CCNGG 2 cut(s) 1259, 1659
BstSFI CTRYAG 1 cut(s) 986
BstSLI GKGCMC 1 cut(s) 1660
BstV1I GCAGC 4 cut(s) 25, 36, 1607, 1610
BstX2I RGATCY 2 cut(s) 187, 1683
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 2 cut(s) 187, 1683
BstZ17I GTATAC 1 cut(s) 691
BsuI GTATCC 3 cut(s) 334, 799, 1267
BsuRI GGCC 1 cut(s) 1360
BtgZI GCGATG 1 cut(s) 915
BtsCI GGATG 5 cut(s) 64, 246, 541, 985, 1024
BtsI GCAGTG 3 cut(s) 33, 360, 1698
BtsIMutI CAGTG 5 cut(s) 33, 360, 934, 1083, 1698
Cac8I GCNNGC 3 cut(s) 22, 482, 560
Cfr13I GGNCC 1 cut(s) 1276
CseI GACGC 1 cut(s) 1187
Csp6I GTAC 4 cut(s) 972, 1210, 1515, 1700
CspCI CAANNNNNGTGG 2 cut(s) 1438, 1473
CviAII CATG 7 cut(s) 392, 430, 481, 587, 626, 1245, 1343
CviQI GTAC 4 cut(s) 972, 1210, 1515, 1700
DdeI CTNAG 7 cut(s) 16, 368, 383, 485, 575, 1309, 1330
DpnI GATC 4 cut(s) 135, 189, 1347, 1685
DpnII GATC 4 cut(s) 133, 187, 1345, 1683
DraI TTTAAA 2 cut(s) 312, 781
EaeI YGGCCR 1 cut(s) 1358
Eco130I CCWWGG 1 cut(s) 508
Eco32I GATATC 1 cut(s) 1251
Eco47I GGWCC 1 cut(s) 1276
Eco57I CTGAAG 3 cut(s) 98, 817, 1076
EcoRV GATATC 1 cut(s) 1251
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 2 cut(s) 631, 1246
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 1 cut(s) 1638
FaeI CATG 7 cut(s) 395, 433, 484, 590, 629, 1248, 1346
FalI AAGNNNNNCTT 4 cut(s) 282, 314, 815, 847
FaqI GGGAC 1 cut(s) 279
FatI CATG 7 cut(s) 391, 429, 480, 586, 625, 1244, 1342
FauNDI CATATG 1 cut(s) 706
FblI GTMKAC 2 cut(s) 153, 690
Fnu4HI GCNGC 4 cut(s) 25, 39, 1596, 1599
FokI GGATG 5 cut(s) 71, 233, 548, 992, 1031
Fsp4HI GCNGC 4 cut(s) 25, 39, 1596, 1599
FspBI CTAG 6 cut(s) 218, 257, 672, 740, 1412, 1688
GluI GCNGC 4 cut(s) 25, 39, 1596, 1599
HaeIII GGCC 1 cut(s) 1360
HapII CCGG 3 cut(s) 1260, 1661, 1681
HgaI GACGC 1 cut(s) 1187
Hin1I GRCGYC 1 cut(s) 1198
Hin1II CATG 7 cut(s) 395, 433, 484, 590, 629, 1248, 1346
HincII GTYRAC 1 cut(s) 1182
HindII GTYRAC 1 cut(s) 1182
HindIII AAGCTT 3 cut(s) 370, 498, 1152
HinfI GANTC 5 cut(s) 212, 316, 622, 1336, 1478
HpaI GTTAAC 1 cut(s) 1182
HpaII CCGG 3 cut(s) 1260, 1661, 1681
HphI GGTGA 4 cut(s) 347, 544, 1331, 1433
Hpy166II GTNNAC 5 cut(s) 154, 691, 1129, 1182, 1212
Hpy188I TCNGA 6 cut(s) 192, 386, 886, 1045, 1312, 1471
Hpy188III TCNNGA 3 cut(s) 56, 320, 596
Hpy8I GTNNAC 5 cut(s) 154, 691, 1129, 1182, 1212
HpyAV CCTTC 5 cut(s) 512, 796, 841, 1108, 1396
HpyCH4III ACNGT 2 cut(s) 695, 1087
HpyCH4IV ACGT 2 cut(s) 1131, 1453
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 30, 1562, 1619
HpyF3I CTNAG 7 cut(s) 16, 368, 383, 485, 575, 1309, 1330
HpySE526I ACGT 2 cut(s) 1131, 1453
Hsp92I GRCGYC 1 cut(s) 1198
Hsp92II CATG 7 cut(s) 395, 433, 484, 590, 629, 1248, 1346
KspAI GTTAAC 1 cut(s) 1182
Kzo9I GATC 4 cut(s) 133, 187, 1345, 1683
LmnI GCTCC 2 cut(s) 384, 1117
Lsp1109I GCAGC 4 cut(s) 25, 36, 1607, 1610
LweI GCATC 3 cut(s) 196, 627, 1455
MaeI CTAG 6 cut(s) 218, 257, 672, 740, 1412, 1688
MaeII ACGT 2 cut(s) 1131, 1453
MaeIII GTNAC 5 cut(s) 120, 213, 437, 589, 1199
MalI GATC 4 cut(s) 135, 189, 1347, 1685
MboI GATC 4 cut(s) 133, 187, 1345, 1683
MboII GAAGA 6 cut(s) 104, 344, 1127, 1534, 1537, 1560
MflI RGATCY 2 cut(s) 187, 1683
MhlI GDGCHC 2 cut(s) 934, 1660
MlsI TGGCCA 1 cut(s) 1360
MluCI AATT 9 cut(s) 79, 233, 422, 728, 893, 1035, 1501, 1586, 1617
MluNI TGGCCA 1 cut(s) 1360
MlyI GAGTC 2 cut(s) 221, 631
Mox20I TGGCCA 1 cut(s) 1360
Mph1103I ATGCAT 2 cut(s) 631, 1246
MscI TGGCCA 1 cut(s) 1360
MseI TTAA 7 cut(s) 63, 311, 450, 780, 1181, 1323, 1382
MslI CAYNNNNRTG 2 cut(s) 57, 1324
Msp20I TGGCCA 1 cut(s) 1360
MspA1I CMGCKG 2 cut(s) 27, 1054
MspI CCGG 3 cut(s) 1260, 1661, 1681
MspR9I CCNGG 2 cut(s) 1261, 1661
Mva1269I GAATGC 3 cut(s) 548, 660, 1030
MwoI GCNNNNNNNGC 4 cut(s) 21, 30, 1562, 1619
NciI CCSGG 2 cut(s) 1261, 1661
NdeI CATATG 1 cut(s) 706
NdeII GATC 4 cut(s) 133, 187, 1345, 1683
NlaIII CATG 7 cut(s) 395, 433, 484, 590, 629, 1248, 1346
NlaIV GGNNCC 4 cut(s) 380, 1555, 1657, 1685
NmuCI GTSAC 3 cut(s) 213, 437, 1199
NsiI ATGCAT 2 cut(s) 631, 1246
NspI RCATGY 2 cut(s) 484, 590
NspV TTCGAA 1 cut(s) 1400
PaeI GCATGC 1 cut(s) 484
PctI GAATGC 3 cut(s) 548, 660, 1030
PfeI GAWTC 3 cut(s) 316, 1336, 1478
PflMI CCANNNNNTGG 1 cut(s) 1245
PkrI GCNGC 4 cut(s) 26, 40, 1597, 1600
PleI GAGTC 2 cut(s) 220, 630
PpsI GAGTC 2 cut(s) 220, 630
Psp1406I AACGTT 1 cut(s) 1131
PspN4I GGNNCC 4 cut(s) 380, 1555, 1657, 1685
PspPI GGNCC 1 cut(s) 1276
PsuI RGATCY 2 cut(s) 187, 1683
PvuII CAGCTG 1 cut(s) 1054
RsaI GTAC 4 cut(s) 973, 1211, 1516, 1701
RsaNI GTAC 4 cut(s) 972, 1210, 1515, 1700
RseI CAYNNNNRTG 2 cut(s) 57, 1324
SaqAI TTAA 7 cut(s) 63, 311, 450, 780, 1181, 1323, 1382
SatI GCNGC 4 cut(s) 25, 39, 1596, 1599
Sau3AI GATC 4 cut(s) 133, 187, 1345, 1683
Sau96I GGNCC 1 cut(s) 1276
ScaI AGTACT 1 cut(s) 1516
SchI GAGTC 2 cut(s) 221, 631
ScrFI CCNGG 2 cut(s) 1261, 1661
SduI GDGCHC 2 cut(s) 934, 1660
SfaNI GCATC 3 cut(s) 196, 627, 1455
SfcI CTRYAG 1 cut(s) 986
SfuI TTCGAA 1 cut(s) 1400
SinI GGWCC 1 cut(s) 1276
SmiMI CAYNNNNRTG 2 cut(s) 57, 1324
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
SphI GCATGC 1 cut(s) 484
Sse9I AATT 9 cut(s) 79, 233, 422, 728, 893, 1035, 1501, 1586, 1617
SsiI CCGC 1 cut(s) 27
SspI AATATT 1 cut(s) 1548
SspMI CTAG 6 cut(s) 218, 257, 672, 740, 1412, 1688
StyD4I CCNGG 2 cut(s) 1259, 1659
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 695, 1087
TaiI ACGT 2 cut(s) 1134, 1456
TaqI TCGA 3 cut(s) 253, 1400, 1615
TasI AATT 9 cut(s) 79, 233, 422, 728, 893, 1035, 1501, 1586, 1617
TatI WGTACW 3 cut(s) 1209, 1514, 1699
TfiI GAWTC 3 cut(s) 316, 1336, 1478
Tru1I TTAA 7 cut(s) 63, 311, 450, 780, 1181, 1323, 1382
Tru9I TTAA 7 cut(s) 63, 311, 450, 780, 1181, 1323, 1382
TscAI CASTG 5 cut(s) 40, 367, 934, 1090, 1698
TseFI GTSAC 3 cut(s) 213, 437, 1199
TseI GCWGC 4 cut(s) 24, 38, 1595, 1598
Tsp45I GTSAC 3 cut(s) 213, 437, 1199
TspDTI ATGAA 8 cut(s) 418, 492, 510, 723, 996, 1107, 1329, 1544
TspGWI ACGGA 2 cut(s) 171, 1199
TspRI CASTG 5 cut(s) 40, 367, 934, 1090, 1698
Van91I CCANNNNNTGG 1 cut(s) 1245
VpaK11BI GGWCC 1 cut(s) 1276
XapI RAATTY 4 cut(s) 422, 728, 1035, 1586
XceI RCATGY 2 cut(s) 484, 590
XmiI GTMKAC 2 cut(s) 153, 690
XspI CTAG 6 cut(s) 218, 257, 672, 740, 1412, 1688
ZrmI AGTACT 1 cut(s) 1516
Zsp2I ATGCAT 2 cut(s) 631, 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.