RchiOBHm_Chr6g0252721

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000768
Physical Location & Seq
Forward (+)
7909914 .. 7914048
4135 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22663

Sequence Viewer

Length: 1710 bp
ATGTCTACCAAACACTTAGCTACCGCTGCTCGAACTTCACATCTGGATGGTAGAAGACTGACAGCAAATTATAATCCAAACATGTGGAGTTATGATTTTATTCAGTCATTACAGATTGATGATCATGATCATGAAGAAGACAAAGATAATAGGTGGAAGTTGTTAGAGGAGGATGTGAAAAATATGATTGATTATGATAATGATGCGCAATCGCTAGTCACTACAATTGAATTGATTGATGACATCCAACGATTAGGTTTGAGACACCGATTTGAGGCCAGTATAACAGAAGCCCTTGATAGAGTTTTGAAGAATCTTGATCAAATAATAAACAAGGATACTCCAAGTCTCCACCTCAATGCTCTCAGCTTCAGGCTCCTTAGACAGCATGGGTTTCAAGTCTTCCAAGATGCCTTCAAAATTTTCACAGACTACGACGGCAGCTTTAAGAATTGCCTTTGCAAAGATGTCAAAGGGATGCTAAGTCTGTACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAGCATGCATCTAAAGAACCTCAGCATATTCCATGTTACTCAAGACAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGGATGCAAAGATTAGAAGCTAGATGGTATATTGAGGCATACGGTAAAAAGGCAAATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATTTTAAAGACGTTTCAAGGTGGTGGAAGGATATGGGATTAGCAAAGAAGTTGTCATTCAGCAGAGACAAACTGATGGAGCTGTTCTTTTGGTCAGTTGGTATAGTGTTTGAACCTCAATTCAGCAATCTTAGAAAAGGAATAACTAAAGTCAGTGCTCTAATAATGACTATTGATGATGTCTATGACGTTTATGGTACTTTGGATGAACTGAAGCTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGAGTACAAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAATGTCCTTCCTTACGTGACAAAAGCTTGGGCTGATATGTGCAAATCTTGGTTAACGGAGGCAGAGTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCATCGTCCGGGGTGGTAATTCTAGTCCATATCTACTTTCTATTGAATCAAAATATCTTGGATGAAGCACTTAGATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCATCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCTGAACTAGAGAGAGGTGAAACTGCAACTTCTATATCCTGCATCAAACGTGATGGTGTTGTTTCTGATGAGGAATCTACTATCAAATATATTACTAATTTGATTGAGAATAGTTGGAAGAAGATGAATAAAGATGGACTACTATTTGGTGTTAGTAGTGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAGCAATAAACCTTGCTCGGATTGCCCAATGCATTTACCAATATGGAGACGGGTTTGGTGCCCCAGACAAAAGAGTAAAGAATCAGATCCTAGCAGTGATTGTACAACCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

569

Amino Acids

65.74

Weight (kDa)

5.59

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 28 - 210 1.2e-48 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 267 - 508 2.8e-84 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 307 - 508 2.9e-55 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
Acc16I TGCGCA 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 1652
AccB7I CCANNNNNTGG 1 cut(s) 1242
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 1675
AcoI YGGCCR 1 cut(s) 1355
AcsI RAATTY 4 cut(s) 420, 725, 1032, 1583
AcuI CTGAAG 3 cut(s) 355, 1004, 1073
AcyI GRCGYC 1 cut(s) 1195
AfaI GTAC 5 cut(s) 491, 970, 1046, 1208, 1698
AfiI CCNNNNNNNGG 2 cut(s) 274, 1242
AflIII ACRYGT 1 cut(s) 81
Alw21I GWGCWC 1 cut(s) 931
Alw26I GTCTC 4 cut(s) 256, 353, 831, 1635
AlwI GGATC 1 cut(s) 1675
AoxI GGCC 3 cut(s) 276, 537, 1355
ApeKI GCWGC 4 cut(s) 26, 441, 1592, 1595
ApoI RAATTY 4 cut(s) 420, 725, 1032, 1583
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
Asp700I GAANNNNTTC 1 cut(s) 989
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 538
AsuC2I CCSGG 1 cut(s) 1258
AsuHPI GGTGA 3 cut(s) 541, 1328, 1430
AsuII TTCGAA 1 cut(s) 1397
BaeGI GKGCMC 1 cut(s) 1657
BalI TGGCCA 1 cut(s) 1357
BanI GGYRCC 1 cut(s) 1652
BarI GAAGNNNNNNTAC 2 cut(s) 1549, 1581
BbsI GAAGAC 3 cut(s) 61, 144, 394
Bbv12I GWGCWC 1 cut(s) 931
BbvCI CCTCAGC 1 cut(s) 572
BbvI GCAGC 4 cut(s) 13, 453, 1604, 1607
BccI CCATC 7 cut(s) 41, 666, 841, 1005, 1366, 1448, 1529
BceAI ACGGC 1 cut(s) 454
BciVI GTATCC 1 cut(s) 331
BclI TGATCA 3 cut(s) 121, 127, 319
BcnI CCSGG 1 cut(s) 1258
BcoDI GTCTC 4 cut(s) 256, 353, 831, 1635
BfaI CTAG 6 cut(s) 215, 669, 737, 1271, 1409, 1685
BfuI GTATCC 1 cut(s) 331
BisI GCNGC 4 cut(s) 27, 442, 1593, 1596
BlsI GCNGC 4 cut(s) 28, 443, 1594, 1597
Bme1390I CCNGG 1 cut(s) 1258
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 2 cut(s) 377, 1654
BmrFI CCNGG 1 cut(s) 1258
BmsI GCATC 8 cut(s) 193, 400, 468, 568, 624, 642, 1313, 1452
BpiI GAAGAC 3 cut(s) 61, 144, 394
BplI GAGNNNNNCTC 2 cut(s) 510, 542
Bpu10I CCTNAGC 1 cut(s) 572
Bpu14I TTCGAA 1 cut(s) 1397
BpuEI CTTGAG 1 cut(s) 576
BpuMI CCSGG 1 cut(s) 1258
BsaAI YACGTR 1 cut(s) 1141
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 1195
BsaJI CCNNGG 2 cut(s) 505, 1257
BsaXI ACNNNNNCTCC 4 cut(s) 1113, 1143, 1175, 1205
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 1242
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 638
Bse8I GATNNNNATC 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 505, 1257
BseGI GGATG 9 cut(s) 52, 178, 243, 483, 538, 657, 982, 1021, 1315
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 274, 1242
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 2 cut(s) 379, 586
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 1657
BseXI GCAGC 4 cut(s) 13, 453, 1604, 1607
BshFI GGCC 3 cut(s) 278, 539, 1357
BshNI GGYRCC 1 cut(s) 1652
BsiHKAI GWGCWC 1 cut(s) 931
BsiSI CCGG 1 cut(s) 1257
BslI CCNNNNNNNGG 2 cut(s) 274, 1242
BsmAI GTCTC 4 cut(s) 256, 353, 831, 1635
BsmBI CGTCTC 1 cut(s) 1635
BsmI GAATGC 2 cut(s) 545, 1027
BsnI GGCC 3 cut(s) 278, 539, 1357
Bsp119I TTCGAA 1 cut(s) 1397
Bsp1286I GDGCHC 2 cut(s) 931, 1657
Bsp1407I TGTACA 1 cut(s) 1696
Bsp143I GATC 5 cut(s) 121, 127, 319, 1342, 1680
BspACI CCGC 1 cut(s) 24
BspANI GGCC 3 cut(s) 278, 539, 1357
BspCNI CTCAG 2 cut(s) 378, 585
BspHI TCATGA 2 cut(s) 124, 130
BspLI GGNNCC 2 cut(s) 377, 1654
BspPI GGATC 1 cut(s) 1675
BspT104I TTCGAA 1 cut(s) 1397
BspT107I GGYRCC 1 cut(s) 1652
BsrDI GCAATG 1 cut(s) 638
BsrGI TGTACA 1 cut(s) 1696
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 505, 1257
BssMI GATC 5 cut(s) 121, 127, 319, 1342, 1680
BssNI GRCGYC 1 cut(s) 1195
BssT1I CCWWGG 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 692, 1084
BstACI GRCGYC 1 cut(s) 1195
BstAUI TGTACA 1 cut(s) 1696
BstBAI YACGTR 1 cut(s) 1141
BstBI TTCGAA 1 cut(s) 1397
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 8 cut(s) 16, 365, 380, 482, 572, 902, 1319, 1327
BstF5I GGATG 9 cut(s) 52, 178, 243, 483, 538, 657, 982, 1021, 1315
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 5 cut(s) 124, 130, 322, 1345, 1683
BstMAI GTCTC 4 cut(s) 256, 353, 831, 1635
BstMBI GATC 5 cut(s) 121, 127, 319, 1342, 1680
BstMWI GCNNNNNNNGC 2 cut(s) 26, 1616
BstNSI RCATGY 2 cut(s) 85, 559
BstSCI CCNGG 1 cut(s) 1256
BstSLI GKGCMC 1 cut(s) 1657
BstV1I GCAGC 4 cut(s) 13, 453, 1604, 1607
BstV2I GAAGAC 3 cut(s) 61, 144, 394
BstX2I RGATCY 1 cut(s) 1680
BstXI CCANNNNNNTGG 1 cut(s) 84
BstYI RGATCY 1 cut(s) 1680
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 3 cut(s) 278, 539, 1357
BtsCI GGATG 9 cut(s) 52, 178, 243, 483, 538, 657, 982, 1021, 1315
BtsI GCAGTG 1 cut(s) 1695
BtsIMutI CAGTG 3 cut(s) 931, 1080, 1695
Cac8I GCNNGC 1 cut(s) 557
CciI TCATGA 2 cut(s) 124, 130
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 538
CseI GACGC 1 cut(s) 1184
Csp6I GTAC 5 cut(s) 490, 969, 1045, 1207, 1697
CviAII CATG 9 cut(s) 82, 125, 131, 389, 556, 584, 623, 1242, 1340
CviQI GTAC 5 cut(s) 490, 969, 1045, 1207, 1697
DdeI CTNAG 8 cut(s) 16, 365, 380, 482, 572, 902, 1319, 1327
DpnI GATC 5 cut(s) 123, 129, 321, 1344, 1682
DpnII GATC 5 cut(s) 121, 127, 319, 1342, 1680
DraI TTTAAA 1 cut(s) 778
EaeI YGGCCR 1 cut(s) 1355
Eco130I CCWWGG 1 cut(s) 505
Eco32I GATATC 1 cut(s) 1248
Eco57I CTGAAG 3 cut(s) 355, 1004, 1073
EcoO109I RGGNCCY 1 cut(s) 538
EcoRV GATATC 1 cut(s) 1248
EcoT14I CCWWGG 1 cut(s) 505
EcoT22I ATGCAT 4 cut(s) 561, 628, 1243, 1628
ErhI CCWWGG 1 cut(s) 505
Esp3I CGTCTC 1 cut(s) 1635
FaeI CATG 9 cut(s) 85, 128, 134, 392, 559, 587, 626, 1245, 1343
FalI AAGNNNNNCTT 2 cut(s) 1215, 1247
FatI CATG 9 cut(s) 81, 124, 130, 388, 555, 583, 622, 1241, 1339
FbaI TGATCA 3 cut(s) 121, 127, 319
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 27, 442, 1593, 1596
FokI GGATG 9 cut(s) 59, 185, 230, 490, 545, 664, 989, 1028, 1322
Fsp4HI GCNGC 4 cut(s) 27, 442, 1593, 1596
FspBI CTAG 6 cut(s) 215, 669, 737, 1271, 1409, 1685
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 207
GluI GCNGC 4 cut(s) 27, 442, 1593, 1596
HaeIII GGCC 3 cut(s) 278, 539, 1357
HapII CCGG 1 cut(s) 1257
HgaI GACGC 1 cut(s) 1184
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 1195
Hin1II CATG 9 cut(s) 85, 128, 134, 392, 559, 587, 626, 1245, 1343
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 1179
HindII GTYRAC 1 cut(s) 1179
HindIII AAGCTT 2 cut(s) 495, 1149
HinfI GANTC 6 cut(s) 313, 619, 1294, 1333, 1475, 1675
HpaI GTTAAC 1 cut(s) 1179
HpaII CCGG 1 cut(s) 1257
HphI GGTGA 3 cut(s) 541, 1328, 1430
Hpy166II GTNNAC 3 cut(s) 6, 1179, 1209
Hpy188I TCNGA 4 cut(s) 1042, 1468, 1614, 1680
Hpy188III TCNNGA 5 cut(s) 44, 125, 131, 317, 593
Hpy8I GTNNAC 3 cut(s) 6, 1179, 1209
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 6 cut(s) 424, 509, 793, 1105, 1142, 1393
HpyCH4III ACNGT 2 cut(s) 692, 1084
HpyCH4IV ACGT 4 cut(s) 783, 960, 1140, 1450
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 1616
HpyF3I CTNAG 8 cut(s) 16, 365, 380, 482, 572, 902, 1319, 1327
HpySE526I ACGT 4 cut(s) 783, 960, 1140, 1450
Hsp92I GRCGYC 1 cut(s) 1195
Hsp92II CATG 9 cut(s) 85, 128, 134, 392, 559, 587, 626, 1245, 1343
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 3 cut(s) 121, 127, 319
KspAI GTTAAC 1 cut(s) 1179
Kzo9I GATC 5 cut(s) 121, 127, 319, 1342, 1680
LmnI GCTCC 3 cut(s) 381, 850, 1114
LpnPI CCDG 9 cut(s) 29, 292, 358, 565, 634, 698, 1270, 1453, 1671
Lsp1109I GCAGC 4 cut(s) 13, 453, 1604, 1607
LweI GCATC 8 cut(s) 193, 400, 468, 568, 624, 642, 1313, 1452
MaeI CTAG 6 cut(s) 215, 669, 737, 1271, 1409, 1685
MaeII ACGT 4 cut(s) 783, 960, 1140, 1450
MaeIII GTNAC 5 cut(s) 217, 586, 1141, 1196, 1390
MalI GATC 5 cut(s) 123, 129, 321, 1344, 1682
MboI GATC 5 cut(s) 121, 127, 319, 1342, 1680
MboII GAAGA 9 cut(s) 66, 146, 149, 322, 394, 1235, 1531, 1534, 1557
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 1 cut(s) 1680
MhlI GDGCHC 2 cut(s) 931, 1657
MlsI TGGCCA 1 cut(s) 1357
MluNI TGGCCA 1 cut(s) 1357
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 2 cut(s) 271, 1496
Mox20I TGGCCA 1 cut(s) 1357
Mph1103I ATGCAT 4 cut(s) 561, 628, 1243, 1628
MroXI GAANNNNTTC 1 cut(s) 989
MscI TGGCCA 1 cut(s) 1357
MseI TTAA 4 cut(s) 447, 777, 1178, 1708
MslI CAYNNNNRTG 5 cut(s) 45, 129, 357, 554, 1321
Msp20I TGGCCA 1 cut(s) 1357
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 1257
MspR9I CCNGG 1 cut(s) 1258
MunI CAATTG 1 cut(s) 225
Mva1269I GAATGC 2 cut(s) 545, 1027
MwoI GCNNNNNNNGC 2 cut(s) 26, 1616
NciI CCSGG 1 cut(s) 1258
NdeII GATC 5 cut(s) 121, 127, 319, 1342, 1680
NlaIII CATG 9 cut(s) 85, 128, 134, 392, 559, 587, 626, 1245, 1343
NlaIV GGNNCC 2 cut(s) 377, 1654
NmuCI GTSAC 3 cut(s) 217, 1141, 1196
NsbI TGCGCA 1 cut(s) 207
NsiI ATGCAT 4 cut(s) 561, 628, 1243, 1628
NspI RCATGY 2 cut(s) 85, 559
NspV TTCGAA 1 cut(s) 1397
PaeI GCATGC 1 cut(s) 559
PagI TCATGA 2 cut(s) 124, 130
PciI ACATGT 1 cut(s) 81
PctI GAATGC 2 cut(s) 545, 1027
PdmI GAANNNNTTC 1 cut(s) 989
PfeI GAWTC 5 cut(s) 313, 1294, 1333, 1475, 1675
PflMI CCANNNNNTGG 1 cut(s) 1242
PkrI GCNGC 4 cut(s) 28, 443, 1594, 1597
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
Ppu21I YACGTR 1 cut(s) 1141
PscI ACATGT 1 cut(s) 81
PsiI TTATAA 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 377, 1654
PspPI GGNCC 1 cut(s) 538
PsuI RGATCY 1 cut(s) 1680
RsaI GTAC 5 cut(s) 491, 970, 1046, 1208, 1698
RsaNI GTAC 5 cut(s) 490, 969, 1045, 1207, 1697
RseI CAYNNNNRTG 5 cut(s) 45, 129, 357, 554, 1321
SaqAI TTAA 4 cut(s) 447, 777, 1178, 1708
SatI GCNGC 4 cut(s) 27, 442, 1593, 1596
Sau3AI GATC 5 cut(s) 121, 127, 319, 1342, 1680
Sau96I GGNCC 1 cut(s) 538
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 1 cut(s) 1258
SduI GDGCHC 2 cut(s) 931, 1657
SfaNI GCATC 8 cut(s) 193, 400, 468, 568, 624, 642, 1313, 1452
SfuI TTCGAA 1 cut(s) 1397
SmiMI CAYNNNNRTG 5 cut(s) 45, 129, 357, 554, 1321
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
SphI GCATGC 1 cut(s) 559
SsiI CCGC 1 cut(s) 24
SspMI CTAG 6 cut(s) 215, 669, 737, 1271, 1409, 1685
StyD4I CCNGG 1 cut(s) 1256
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 2 cut(s) 692, 1084
TaiI ACGT 4 cut(s) 786, 963, 1143, 1453
TaqI TCGA 2 cut(s) 31, 1397
TatI WGTACW 3 cut(s) 1044, 1206, 1696
TfiI GAWTC 5 cut(s) 313, 1294, 1333, 1475, 1675
Tru1I TTAA 4 cut(s) 447, 777, 1178, 1708
Tru9I TTAA 4 cut(s) 447, 777, 1178, 1708
TscAI CASTG 3 cut(s) 931, 1087, 1695
TseFI GTSAC 3 cut(s) 217, 1141, 1196
TseI GCWGC 4 cut(s) 26, 441, 1592, 1595
Tsp45I GTSAC 3 cut(s) 217, 1141, 1196
TspDTI ATGAA 7 cut(s) 147, 489, 993, 1104, 1116, 1326, 1541
TspGWI ACGGA 1 cut(s) 1196
TspRI CASTG 3 cut(s) 931, 1087, 1695
Van91I CCANNNNNTGG 1 cut(s) 1242
XapI RAATTY 4 cut(s) 420, 725, 1032, 1583
XceI RCATGY 2 cut(s) 85, 559
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 989
XspI CTAG 6 cut(s) 215, 669, 737, 1271, 1409, 1685
Zsp2I ATGCAT 4 cut(s) 561, 628, 1243, 1628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.