Rmu_sc0001689.1_g000022

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001689.1
OG0000768
Physical Location & Seq
Reverse (-)
112297 .. 114207
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001689.1_g000022.1.cds

Sequence Viewer

Length: 732 bp
atggactgcgacgacagcttcaaggattgcctttgcgaagatgtcaaaggaatgttgagtctatacgaagcttcattccttggtattgaaggagaaacactcttggatgaggctcttgcattcaccagcatgcacctaaagaacctcagcagattgcatgttactcaaggcataggtgtattagagcaagtgagtcatgcattggagatgccattgcaccatagaatgcaaagactagaagctagatggtatattgaggcatacagtaaaaaggcagatgcaaatcaggtgctacttgaatttgccaagctagattacaatgtggtgcaacaaacataccaaagagatcttaaagacatttcaaggccatggtggttgcctcccttggcacccctaaaggcgacccttgtacattctatatctgcagaactagagagaggtgaaactgcaacttcaatatcctgcatcagtcgtgatggtgttgtttctgatgaggaatctgctcgcaaatatattagtaatttgattgagaatagttggaagaagatgaacaaagatggactactatttggtgctaatagagcttcttctccattcacaaaggaatttgttgcagcagcaatgaaccttgcacgaattgcccaatgcatttaccaatatggagacgggattggtgccccggacaaaagagtaaagaaccagatcctagcagtaattgtacaacctgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

243

Amino Acids

27.31

Weight (kDa)

5.72

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 388, 674
AclWI GGATC 1 cut(s) 697
AcsI RAATTY 2 cut(s) 299, 605
AfaI GTAC 2 cut(s) 411, 720
AgsI TTSAA 5 cut(s) 22, 89, 299, 363, 456
AluBI AGCT 5 cut(s) 18, 71, 242, 310, 584
AluI AGCT 5 cut(s) 18, 71, 242, 310, 584
Alw26I GTCTC 1 cut(s) 657
AlwI GGATC 1 cut(s) 697
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 614, 617
ApoI RAATTY 2 cut(s) 299, 605
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 115, 452
BaeGI GKGCMC 1 cut(s) 679
BanI GGYRCC 2 cut(s) 388, 674
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 626, 629
BccI CCATC 3 cut(s) 240, 470, 551
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 1 cut(s) 657
BfaI CTAG 5 cut(s) 236, 243, 311, 431, 707
BfmI CTRYAG 1 cut(s) 423
BglII AGATCT 1 cut(s) 346
BisI GCNGC 2 cut(s) 615, 618
BlsI GCNGC 2 cut(s) 616, 619
Bme1390I CCNGG 1 cut(s) 680
BmiI GGNNCC 2 cut(s) 390, 676
BmrFI CCNGG 1 cut(s) 680
BmsI GCATC 3 cut(s) 198, 268, 474
BplI GAGNNNNNCTC 2 cut(s) 84, 116
Bpu10I CCTNAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 680
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 4 cut(s) 79, 368, 384, 678
Bse3DI GCAATG 2 cut(s) 212, 627
Bse8I GATNNNNATC 1 cut(s) 282
BseDI CCNNGG 4 cut(s) 79, 368, 384, 678
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 282
BseMI GCAATG 2 cut(s) 212, 627
BseMII CTCAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 679
BseXI GCAGC 2 cut(s) 626, 629
BshFI GGCC 1 cut(s) 367
BshNI GGYRCC 2 cut(s) 388, 674
BsiSI CCGG 1 cut(s) 680
BsmAI GTCTC 1 cut(s) 657
BsmBI CGTCTC 1 cut(s) 657
BsmI GAATGC 2 cut(s) 119, 231
BsnI GGCC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 679
Bsp1407I TGTACA 2 cut(s) 409, 718
Bsp143I GATC 2 cut(s) 346, 702
Bsp19I CCATGG 1 cut(s) 368
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 390, 676
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 1 cut(s) 697
BspT107I GGYRCC 2 cut(s) 388, 674
BsrDI GCAATG 2 cut(s) 212, 627
BsrGI TGTACA 2 cut(s) 409, 718
BssECI CCNNGG 4 cut(s) 79, 368, 384, 678
BssMI GATC 2 cut(s) 346, 702
BssT1I CCWWGG 3 cut(s) 79, 368, 384
Bst4CI ACNGT 1 cut(s) 266
BstAPI GCANNNNNTGC 1 cut(s) 638
BstAUI TGTACA 2 cut(s) 409, 718
BstC8I GCNNGC 2 cut(s) 131, 505
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 2 cut(s) 349, 705
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 2 cut(s) 346, 702
BstMWI GCNNNNNNNGC 3 cut(s) 15, 581, 638
BstNSI RCATGY 2 cut(s) 133, 161
BstSCI CCNGG 1 cut(s) 678
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 679
BstV1I GCAGC 2 cut(s) 626, 629
BstX2I RGATCY 2 cut(s) 346, 702
BstYI RGATCY 2 cut(s) 346, 702
BsuRI GGCC 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 368
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 131, 505
Csp6I GTAC 2 cut(s) 410, 719
CviAII CATG 4 cut(s) 130, 158, 197, 369
CviJI RGCY 7 cut(s) 18, 71, 113, 242, 310, 367, 584
CviKI_1 RGCY 7 cut(s) 18, 71, 113, 242, 310, 367, 584
CviQI GTAC 2 cut(s) 410, 719
DdeI CTNAG 1 cut(s) 146
DpnI GATC 2 cut(s) 348, 704
DpnII GATC 2 cut(s) 346, 702
Eco130I CCWWGG 3 cut(s) 79, 368, 384
EcoT14I CCWWGG 3 cut(s) 79, 368, 384
EcoT22I ATGCAT 2 cut(s) 202, 650
ErhI CCWWGG 3 cut(s) 79, 368, 384
Esp3I CGTCTC 1 cut(s) 657
FaeI CATG 4 cut(s) 133, 161, 200, 372
FatI CATG 4 cut(s) 129, 157, 196, 368
Fnu4HI GCNGC 2 cut(s) 615, 618
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 615, 618
FspBI CTAG 5 cut(s) 236, 243, 311, 431, 707
GluI GCNGC 2 cut(s) 615, 618
HaeIII GGCC 1 cut(s) 367
HapII CCGG 1 cut(s) 680
Hin1II CATG 4 cut(s) 133, 161, 200, 372
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 3 cut(s) 58, 193, 497
HpaII CCGG 1 cut(s) 680
HphI GGTGA 2 cut(s) 115, 452
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 1 cut(s) 473
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 581, 638
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 4 cut(s) 133, 161, 200, 372
Kzo9I GATC 2 cut(s) 346, 702
LpnPI CCDG 5 cut(s) 139, 272, 475, 693, 713
Lsp1109I GCAGC 2 cut(s) 626, 629
LweI GCATC 3 cut(s) 198, 268, 474
MaeI CTAG 5 cut(s) 236, 243, 311, 431, 707
MaeIII GTNAC 1 cut(s) 160
MalI GATC 2 cut(s) 348, 704
MboI GATC 2 cut(s) 346, 702
MboII GAAGA 4 cut(s) 50, 553, 556, 579
MflI RGATCY 2 cut(s) 346, 702
MhlI GDGCHC 1 cut(s) 679
MluCI AATT 5 cut(s) 299, 520, 605, 636, 714
MlyI GAGTC 2 cut(s) 67, 202
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 6 cut(s) 103, 155, 250, 390, 431, 487
Mph1103I ATGCAT 2 cut(s) 202, 650
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 680
MspR9I CCNGG 1 cut(s) 680
Mva1269I GAATGC 2 cut(s) 119, 231
MwoI GCNNNNNNNGC 3 cut(s) 15, 581, 638
NciI CCSGG 1 cut(s) 680
NcoI CCATGG 1 cut(s) 368
NdeII GATC 2 cut(s) 346, 702
NlaIII CATG 4 cut(s) 133, 161, 200, 372
NlaIV GGNNCC 2 cut(s) 390, 676
NsiI ATGCAT 2 cut(s) 202, 650
NspI RCATGY 2 cut(s) 133, 161
PaeI GCATGC 1 cut(s) 133
PctI GAATGC 2 cut(s) 119, 231
PfeI GAWTC 1 cut(s) 497
PkrI GCNGC 2 cut(s) 616, 619
PleI GAGTC 2 cut(s) 66, 201
PpsI GAGTC 2 cut(s) 66, 201
PspN4I GGNNCC 2 cut(s) 390, 676
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 2 cut(s) 346, 702
RsaI GTAC 2 cut(s) 411, 720
RsaNI GTAC 2 cut(s) 410, 719
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 2 cut(s) 615, 618
Sau3AI GATC 2 cut(s) 346, 702
SchI GAGTC 2 cut(s) 67, 202
ScrFI CCNGG 1 cut(s) 680
SduI GDGCHC 1 cut(s) 679
SfaNI GCATC 3 cut(s) 198, 268, 474
SfcI CTRYAG 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
SphI GCATGC 1 cut(s) 133
Sse9I AATT 5 cut(s) 299, 520, 605, 636, 714
SspMI CTAG 5 cut(s) 236, 243, 311, 431, 707
StyD4I CCNGG 1 cut(s) 678
StyI CCWWGG 3 cut(s) 79, 368, 384
TaaI ACNGT 1 cut(s) 266
TasI AATT 5 cut(s) 299, 520, 605, 636, 714
TatI WGTACW 2 cut(s) 409, 718
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseI GCWGC 2 cut(s) 614, 617
TspDTI ATGAA 3 cut(s) 63, 563, 638
XapI RAATTY 2 cut(s) 299, 605
XceI RCATGY 2 cut(s) 133, 161
XspI CTAG 5 cut(s) 236, 243, 311, 431, 707
Zsp2I ATGCAT 2 cut(s) 202, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.