Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000768

Physical Location & Seq

Genomic Coordinates Reverse (-)

61193039 .. 61194894

Gene Structure 1856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015069

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCTAAGTTTGTACGAAGCTTCATTCCTTGGTATTGAAGGGGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAACATGCATCTAAAGAACCTTAGCAGATTCCATGTTACTCAAGACAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAAAATGCGAAGATTAGAAGCAAGATGGTGGTGGAAGGATATGGGGTTAGCAAAGAAGTTGTCCTTCAACAGAGATAGACTGATGGAGCTGTTCTTTTGGTCAGTTGGTATAGTGTTTGAACCTCAATTCAGCAATCTTAGAAAAGGGATAACTAAAGTCAGTGCTCTAATAATGACTATTGATGATGTCTATGATGTTTATGGTACTTTGGATGAACTGGAACTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCAGTGGAAATTCTTTCAGAGTACCATCTAAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAATGTCCTTCCTTACGTGACAAAAGCTTGGACTGATATGTGCAAATCTTGGTTAACGGAGGCAAAGTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCAGCGTCCGGGGTGGTCATTCTAGTCCATATCTACTTTCTACTGAATCAAAATATCTTAGATGAAGCACTTAAATGCTTAGAGACTCACCATGATCTCTTGCGTTGGCCATCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGACGAGAGGTGAAACTGCAACTTCTATATCCTTCATCAAACGTGATGGTATTGTTTCTGATGAGGAATCTGCTCTGAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATAAATAAAGATGGACTACTATTGGGTGTTAGTACTGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAGCAACAAACCTTGCTCAGATTGCCCAATGCATTTACCAATATGGAGACGGGTTTGGTGCCCCAGACAAAAGAGTAAAGAATCAGATCCTAGCAGTGATTGTACAACCCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

368

Amino Acids

42.14

Weight (kDa)

5.74

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	1 - 51	2.5e-10	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	69 - 306	4.8e-80	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	109 - 306	1.4e-49	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24210 AT3G25810 AT3G25820 AT3G25820 AT3G25820 AT3G25820 AT3G25830 AT4G16730 AT4G16730 AT4G16740 AT4G16740 AT4G16740 AT4G16740
fragaria_vesca	FvH4_6g43791 FvH4_6g43792 FvH4_6g43792 FvH4_6g43793 FvH4_6g43794 FvH4_6g43820 FvH4_6g44544 FvH4_6g45600
malus_domestica	MD08G1157700.v1.1 MD17G1090000.v1.1 MD17G1090100.v1.1 MD17G1090400.v1.1
pyrus_communis	pycom17g08710 pycom17g08720
rosa_chinensis	RchiOBHm_Chr2g0160561 RchiOBHm_Chr2g0160591 RchiOBHm_Chr3g0484891 RchiOBHm_Chr6g0252721
rosa_laevigata	RLG00000015069 RLG00000021224 RLG00000023189 RLG00000023190 RLG00000023196 RLG00000023197
rosa_multiflora	Rmu_co8462617.1_g000001 Rmu_sc0000674.1_g000010 Rmu_sc0001689.1_g000022 Rmu_sc0003707.1_g000003 Rmu_sc0005946.1_g000007 Rmu_sc0006653.1_g000017 Rmu_sc0012232.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397380
rosa_rugosa	Rorug02G0483700 Rorug02G0483800 Rorug02G0483900 Rorug02G0484000 Rorug02G0484000 Rorug03G0214100
rosa_samantha	Rh2AG549100 Rh2BG562800 Rh2BG563300 Rh2CG533400 Rh2DG572200 Rh2DG572300 Rh3AG264500 Rh3BG300000 Rh3CG297600 Rh3DG293400 Rh3DG293600 Rh6AG054500 Rh6BG048300 Rh6DG042600
rosa_wichuraiana	Rw2G045460 Rw2G045470 Rw3G023600 Rw3G023610 Rw6G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1046
AccB7I	CCANNNNNTGG	1 cut(s)	648
AclWI	GGATC	1 cut(s)	1069
AcoI	YGGCCR	1 cut(s)	761
AcsI	RAATTY	2 cut(s)	438, 977
AcyI	GRCGYC	1 cut(s)	601
AfaI	GTAC	6 cut(s)	14, 376, 452, 614, 952, 1092
AfiI	CCNNNNNNNGG	1 cut(s)	648
AgsI	TTSAA	6 cut(s)	38, 238, 290, 413, 517, 629
AluBI	AGCT	4 cut(s)	20, 259, 463, 557
AluI	AGCT	4 cut(s)	20, 259, 463, 557
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	731, 1029
AlwI	GGATC	1 cut(s)	1069
AoxI	GGCC	2 cut(s)	60, 761
ApeKI	GCWGC	2 cut(s)	986, 989
ApoI	RAATTY	2 cut(s)	438, 977
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	664
AsuHPI	GGTGA	3 cut(s)	64, 734, 824
BaeGI	GKGCMC	1 cut(s)	1051
BalI	TGGCCA	1 cut(s)	763
BanI	GGYRCC	1 cut(s)	1046
BarI	GAAGNNNNNNTAC	2 cut(s)	943, 975
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	998, 1001
BccI	CCATC	7 cut(s)	189, 247, 411, 462, 772, 842, 923
BcnI	CCSGG	1 cut(s)	664
BcoDI	GTCTC	2 cut(s)	731, 1029
BfaI	CTAG	2 cut(s)	677, 1079
BisI	GCNGC	2 cut(s)	987, 990
BlsI	GCNGC	2 cut(s)	988, 991
BmcAI	AGTACT	1 cut(s)	952
Bme1390I	CCNGG	1 cut(s)	664
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	1048
BmrFI	CCNGG	1 cut(s)	664
BmsI	GCATC	2 cut(s)	91, 147
Bpu10I	CCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	664
BsaAI	YACGTR	1 cut(s)	547
BsaHI	GRCGYC	1 cut(s)	601
BsaJI	CCNNGG	2 cut(s)	28, 663
BsaXI	ACNNNNNCTCC	4 cut(s)	519, 549, 581, 611
Bsc4I	CCNNNNNNNGG	1 cut(s)	648
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	28, 663
BseGI	GGATG	3 cut(s)	61, 388, 427
BseLI	CCNNNNNNNGG	1 cut(s)	648
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	1019
BseNI	ACTGG	1 cut(s)	393
BseSI	GKGCMC	1 cut(s)	1051
BseXI	GCAGC	2 cut(s)	998, 1001
BshFI	GGCC	2 cut(s)	62, 763
BshNI	GGYRCC	1 cut(s)	1046
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	663
BslI	CCNNNNNNNGG	1 cut(s)	648
BsmAI	GTCTC	2 cut(s)	731, 1029
BsmBI	CGTCTC	1 cut(s)	1029
BsmI	GAATGC	2 cut(s)	68, 433
BsnI	GGCC	2 cut(s)	62, 763
Bsp1286I	GDGCHC	2 cut(s)	337, 1051
Bsp1407I	TGTACA	1 cut(s)	1090
Bsp143I	GATC	2 cut(s)	748, 1074
BspANI	GGCC	2 cut(s)	62, 763
BspCNI	CTCAG	1 cut(s)	1018
BspLI	GGNNCC	1 cut(s)	1048
BspPI	GGATC	1 cut(s)	1069
BspT107I	GGYRCC	1 cut(s)	1046
BsrDI	GCAATG	1 cut(s)	161
BsrGI	TGTACA	1 cut(s)	1090
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	28, 663
BssMI	GATC	2 cut(s)	748, 1074
BssNI	GRCGYC	1 cut(s)	601
BssT1I	CCWWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	490
BstACI	GRCGYC	1 cut(s)	601
BstAUI	TGTACA	1 cut(s)	1090
BstBAI	YACGTR	1 cut(s)	547
BstDEI	CTNAG	6 cut(s)	5, 95, 308, 712, 733, 1005
BstF5I	GGATG	3 cut(s)	61, 388, 427
BstKTI	GATC	2 cut(s)	751, 1077
BstMAI	GTCTC	2 cut(s)	731, 1029
BstMBI	GATC	2 cut(s)	748, 1074
BstMWI	GCNNNNNNNGC	1 cut(s)	1010
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	662
BstSLI	GKGCMC	1 cut(s)	1051
BstV1I	GCAGC	2 cut(s)	998, 1001
BstX2I	RGATCY	1 cut(s)	1074
BstYI	RGATCY	1 cut(s)	1074
BsuRI	GGCC	2 cut(s)	62, 763
BtsCI	GGATG	3 cut(s)	61, 388, 427
BtsI	GCAGTG	2 cut(s)	438, 1089
BtsIMutI	CAGTG	4 cut(s)	337, 438, 486, 1089
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	2 cut(s)	590, 648
Csp6I	GTAC	6 cut(s)	13, 375, 451, 613, 951, 1091
CviAII	CATG	5 cut(s)	79, 107, 146, 648, 746
CviJI	RGCY	7 cut(s)	20, 62, 259, 463, 557, 763, 781
CviKI_1	RGCY	7 cut(s)	20, 62, 259, 463, 557, 763, 781
CviQI	GTAC	6 cut(s)	13, 375, 451, 613, 951, 1091
DdeI	CTNAG	6 cut(s)	5, 95, 308, 712, 733, 1005
DpnI	GATC	2 cut(s)	750, 1076
DpnII	GATC	2 cut(s)	748, 1074
EaeI	YGGCCR	1 cut(s)	761
Eco130I	CCWWGG	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	28
EcoT22I	ATGCAT	4 cut(s)	84, 151, 649, 1022
ErhI	CCWWGG	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	1029
FaeI	CATG	5 cut(s)	82, 110, 149, 651, 749
FalI	AAGNNNNNCTT	4 cut(s)	218, 250, 621, 653
FatI	CATG	5 cut(s)	78, 106, 145, 647, 745
Fnu4HI	GCNGC	2 cut(s)	987, 990
FokI	GGATG	3 cut(s)	68, 395, 434
Fsp4HI	GCNGC	2 cut(s)	987, 990
FspBI	CTAG	2 cut(s)	677, 1079
GluI	GCNGC	2 cut(s)	987, 990
HaeIII	GGCC	2 cut(s)	62, 763
HapII	CCGG	1 cut(s)	663
HgaI	GACGC	2 cut(s)	590, 648
Hin1I	GRCGYC	1 cut(s)	601
Hin1II	CATG	5 cut(s)	82, 110, 149, 651, 749
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HindIII	AAGCTT	2 cut(s)	18, 555
HinfI	GANTC	6 cut(s)	102, 142, 700, 739, 869, 1069
HpaI	GTTAAC	1 cut(s)	585
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	3 cut(s)	64, 734, 824
Hpy166II	GTNNAC	2 cut(s)	585, 615
Hpy188I	TCNGA	5 cut(s)	448, 862, 879, 1008, 1074
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	2 cut(s)	585, 615
Hpy99I	CGWCG	1 cut(s)	808
HpyAV	CCTTC	6 cut(s)	32, 199, 244, 511, 548, 844
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	2 cut(s)	546, 844
HpyCH4V	TGCA	9 cut(s)	68, 82, 149, 166, 431, 573, 647, 821, 1020
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1010
HpyF3I	CTNAG	6 cut(s)	5, 95, 308, 712, 733, 1005
HpySE526I	ACGT	2 cut(s)	546, 844
Hsp92I	GRCGYC	1 cut(s)	601
Hsp92II	CATG	5 cut(s)	82, 110, 149, 651, 749
KspAI	GTTAAC	1 cut(s)	585
Kzo9I	GATC	2 cut(s)	748, 1074
LmnI	GCTCC	2 cut(s)	256, 520
LpnPI	CCDG	3 cut(s)	374, 676, 1065
Lsp1109I	GCAGC	2 cut(s)	998, 1001
LweI	GCATC	2 cut(s)	91, 147
MaeI	CTAG	2 cut(s)	677, 1079
MaeII	ACGT	2 cut(s)	546, 844
MaeIII	GTNAC	4 cut(s)	109, 547, 602, 796
MalI	GATC	2 cut(s)	750, 1076
MboI	GATC	2 cut(s)	748, 1074
MboII	GAAGA	5 cut(s)	192, 641, 925, 928, 951
MflI	RGATCY	1 cut(s)	1074
MhlI	GDGCHC	2 cut(s)	337, 1051
MlsI	TGGCCA	1 cut(s)	763
MluCI	AATT	4 cut(s)	296, 438, 892, 977
MluNI	TGGCCA	1 cut(s)	763
MlyI	GAGTC	2 cut(s)	151, 733
MmeI	TCCRAC	1 cut(s)	890
MnlI	CCTC	6 cut(s)	52, 59, 303, 583, 803, 859
Mox20I	TGGCCA	1 cut(s)	763
Mph1103I	ATGCAT	4 cut(s)	84, 151, 649, 1022
MscI	TGGCCA	1 cut(s)	763
MseI	TTAA	3 cut(s)	584, 726, 1102
MslI	CAYNNNNRTG	2 cut(s)	77, 727
Msp20I	TGGCCA	1 cut(s)	763
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	1 cut(s)	664
Mva1269I	GAATGC	2 cut(s)	68, 433
MwoI	GCNNNNNNNGC	1 cut(s)	1010
NciI	CCSGG	1 cut(s)	664
NdeII	GATC	2 cut(s)	748, 1074
NlaIII	CATG	5 cut(s)	82, 110, 149, 651, 749
NlaIV	GGNNCC	1 cut(s)	1048
NmuCI	GTSAC	2 cut(s)	547, 602
NsiI	ATGCAT	4 cut(s)	84, 151, 649, 1022
NspI	RCATGY	1 cut(s)	82
PctI	GAATGC	2 cut(s)	68, 433
PfeI	GAWTC	4 cut(s)	102, 700, 869, 1069
PflMI	CCANNNNNTGG	1 cut(s)	648
PkrI	GCNGC	2 cut(s)	988, 991
PleI	GAGTC	2 cut(s)	150, 733
PpsI	GAGTC	2 cut(s)	150, 733
Ppu21I	YACGTR	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	1048
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	1074
RsaI	GTAC	6 cut(s)	14, 376, 452, 614, 952, 1092
RsaNI	GTAC	6 cut(s)	13, 375, 451, 613, 951, 1091
RseI	CAYNNNNRTG	2 cut(s)	77, 727
SaqAI	TTAA	3 cut(s)	584, 726, 1102
SatI	GCNGC	2 cut(s)	987, 990
Sau3AI	GATC	2 cut(s)	748, 1074
Sau96I	GGNCC	1 cut(s)	61
ScaI	AGTACT	1 cut(s)	952
SchI	GAGTC	2 cut(s)	151, 733
ScrFI	CCNGG	1 cut(s)	664
SduI	GDGCHC	2 cut(s)	337, 1051
SfaNI	GCATC	2 cut(s)	91, 147
SmiMI	CAYNNNNRTG	2 cut(s)	77, 727
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	4 cut(s)	296, 438, 892, 977
SspMI	CTAG	2 cut(s)	677, 1079
StyD4I	CCNGG	1 cut(s)	662
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	2 cut(s)	549, 847
TaqI	TCGA	1 cut(s)	803
TasI	AATT	4 cut(s)	296, 438, 892, 977
TatI	WGTACW	3 cut(s)	612, 950, 1090
TfiI	GAWTC	4 cut(s)	102, 700, 869, 1069
Tru1I	TTAA	3 cut(s)	584, 726, 1102
Tru9I	TTAA	3 cut(s)	584, 726, 1102
TscAI	CASTG	4 cut(s)	337, 438, 493, 1089
TseFI	GTSAC	2 cut(s)	547, 602
TseI	GCWGC	2 cut(s)	986, 989
Tsp45I	GTSAC	2 cut(s)	547, 602
TspDTI	ATGAA	6 cut(s)	12, 399, 510, 522, 732, 826
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	4 cut(s)	337, 438, 493, 1089
Van91I	CCANNNNNTGG	1 cut(s)	648
XapI	RAATTY	2 cut(s)	438, 977
XceI	RCATGY	1 cut(s)	82
XspI	CTAG	2 cut(s)	677, 1079
ZrmI	AGTACT	1 cut(s)	952
Zsp2I	ATGCAT	4 cut(s)	84, 151, 649, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.