MD08G1157700.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000768
Physical Location & Seq
Reverse (-)
17527348 .. 17529305
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1157700.v1.1.491

Sequence Viewer

Length: 909 bp
ATGTATGAAGCTTCATATTTTGCTTTCGAAGGAAAGAACCCTTTGGATGAAAGCCTTGCGTTCTCAACCATTTATCTCAAGAACCTCAGTGGAGTTAATGTTACCAAAGGACTAGCAGAACAAGTGAGTGATGCACTGGAATTTCCACTGCACCACAGAATGCAAAGATTAGGAGCTAGACGGTATATTGAGGCATACAGTAAAATGCCAGATGCAAATCAAGTGCTACTTGAAATTGCCAAGCGAGATTTTAACAGGGTGCAATGCACACTCCAAAGGGATCTTCAAGAAGTATCAAGGGTTGACAAAAGTGTCTGCTCTGGTAACACCATTGATGATGTCTATGATGTATATGGTACTTTGGATGAACTAGAGCTTTTTACTTCTGCTGTTGAAGAGGAGACAACATGCTGTTATAACAAGCACACACCCACATTTGAAAAATATATTGACAATGCATGGATATCAGTCTCAGGGGTGGTGTTCTTAGTTCATACATATTTTCTCCTCAACCCAAAGATCACAAAGCAAGGACTTGAATGCTTAGAGAATCACCACGGTCTCTTGCATTGGCCATCTCTTATTTTCCGGCTTTCCAATGATTTGAGTACTTCGGCGGCAGAAGTGGAGAGAAAAGAAACTACGAACTCAATCTCATGCATGATGCGTGGCAGTCTGAATATTTCTGAGGAATCTGCTCGTCAATATATAAGTAATTTGGTTGAAAATAGTTGGAAGAAGTTGAACAAAGATGCAGCTTCTGCTTCTCCATTTACCAAGCAATTTGTAAAAGCAGCAATAAACCTTGCTTGGATCTCCCAATGCATATACCAATATGGTGATGGGCATGGAGCTCCAGACACAAGAGCAAAGAATGAAATCCTATCGGTGATTATTGATCCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

303

Amino Acids

34.17

Weight (kDa)

5.43

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 103 - 132 3.6e-06 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 130 - 247 6.7e-24 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 134 - 247 2.6e-27 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
AasI GACNNNNNNGTC 1 cut(s) 311
AciI CCGC 1 cut(s) 617
AclWI GGATC 3 cut(s) 288, 821, 893
AcoI YGGCCR 1 cut(s) 572
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 2 cut(s) 358, 610
AgsI TTSAA 7 cut(s) 233, 287, 395, 440, 539, 725, 745
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 5 cut(s) 11, 176, 376, 758, 854
AluI AGCT 5 cut(s) 11, 176, 376, 758, 854
Alw21I GWGCWC 1 cut(s) 856
Alw26I GTCTC 3 cut(s) 395, 475, 566
AlwI GGATC 3 cut(s) 288, 821, 893
AlwNI CAGNNNCTG 1 cut(s) 761
AoxI GGCC 1 cut(s) 572
ApeKI GCWGC 2 cut(s) 755, 794
ApoI RAATTY 1 cut(s) 140
AsuHPI GGTGA 3 cut(s) 545, 851, 901
AsuII TTCGAA 1 cut(s) 27
BalI TGGCCA 1 cut(s) 574
BanII GRGCYC 1 cut(s) 856
Bbv12I GWGCWC 1 cut(s) 856
BbvI GCAGC 2 cut(s) 767, 806
BccI CCATC 2 cut(s) 583, 836
BcoDI GTCTC 3 cut(s) 395, 475, 566
BfaI CTAG 3 cut(s) 113, 177, 371
BisI GCNGC 3 cut(s) 618, 756, 795
BlsI GCNGC 3 cut(s) 619, 757, 796
BmcAI AGTACT 1 cut(s) 610
BmsI GCATC 4 cut(s) 121, 202, 654, 742
BpmI CTGGAG 1 cut(s) 840
Bpu14I TTCGAA 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 1 cut(s) 556
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 556
BseGI GGATG 2 cut(s) 52, 370
BseJI GATNNNNATC 1 cut(s) 216
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 3 cut(s) 100, 486, 678
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 2 cut(s) 413, 497
BseXI GCAGC 2 cut(s) 767, 806
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 1 cut(s) 574
BsiHKAI GWGCWC 1 cut(s) 856
BsiSI CCGG 1 cut(s) 589
BsmAI GTCTC 3 cut(s) 395, 475, 566
BsmI GAATGC 2 cut(s) 165, 545
BsnI GGCC 1 cut(s) 574
Bso31I GGTCTC 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 856
Bsp143I GATC 4 cut(s) 280, 519, 813, 898
BspACI CCGC 1 cut(s) 617
BspANI GGCC 1 cut(s) 574
BspCNI CTCAG 3 cut(s) 99, 485, 679
BspPI GGATC 3 cut(s) 288, 821, 893
BspT104I TTCGAA 1 cut(s) 27
BspTNI GGTCTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 556
BssMI GATC 4 cut(s) 280, 519, 813, 898
Bst4CI ACNGT 3 cut(s) 183, 200, 560
Bst6I CTCTTC 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBI TTCGAA 1 cut(s) 27
BstDEI CTNAG 5 cut(s) 86, 472, 487, 544, 687
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 2 cut(s) 52, 370
BstKTI GATC 4 cut(s) 283, 522, 816, 901
BstMAI GTCTC 3 cut(s) 395, 475, 566
BstMBI GATC 4 cut(s) 280, 519, 813, 898
BstMWI GCNNNNNNNGC 1 cut(s) 761
BstNSI RCATGY 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 767, 806
BstX2I RGATCY 2 cut(s) 280, 813
BstYI RGATCY 2 cut(s) 280, 813
BsuRI GGCC 1 cut(s) 574
BtgI CCRYGG 1 cut(s) 556
BtsCI GGATG 2 cut(s) 52, 370
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 3 cut(s) 94, 134, 146
CaiI CAGNNNCTG 1 cut(s) 761
Csp6I GTAC 2 cut(s) 357, 609
CviAII CATG 5 cut(s) 408, 459, 657, 661, 848
CviJI RGCY 8 cut(s) 11, 54, 176, 376, 574, 592, 758, 854
CviKI_1 RGCY 8 cut(s) 11, 54, 176, 376, 574, 592, 758, 854
CviQI GTAC 2 cut(s) 357, 609
DdeI CTNAG 5 cut(s) 86, 472, 487, 544, 687
DpnI GATC 4 cut(s) 282, 521, 815, 900
DpnII GATC 4 cut(s) 280, 519, 813, 898
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 572
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 854
Eco24I GRGCYC 1 cut(s) 856
Eco31I GGTCTC 1 cut(s) 566
Eco32I GATATC 1 cut(s) 465
Eco53kI GAGCTC 1 cut(s) 854
EcoICRI GAGCTC 1 cut(s) 854
EcoRV GATATC 1 cut(s) 465
EcoT22I ATGCAT 3 cut(s) 460, 662, 827
EcoT38I GRGCYC 1 cut(s) 856
FaeI CATG 5 cut(s) 411, 462, 660, 664, 851
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 5 cut(s) 407, 458, 656, 660, 847
Fnu4HI GCNGC 3 cut(s) 618, 756, 795
FokI GGATG 2 cut(s) 59, 377
FriOI GRGCYC 1 cut(s) 856
Fsp4HI GCNGC 3 cut(s) 618, 756, 795
FspBI CTAG 3 cut(s) 113, 177, 371
GluI GCNGC 3 cut(s) 618, 756, 795
GsuI CTGGAG 1 cut(s) 840
HaeIII GGCC 1 cut(s) 574
HapII CCGG 1 cut(s) 589
Hin1II CATG 5 cut(s) 411, 462, 660, 664, 851
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 2 cut(s) 550, 692
HpaII CCGG 1 cut(s) 589
HphI GGTGA 3 cut(s) 545, 851, 901
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 678, 688
Hpy188III TCNNGA 3 cut(s) 79, 287, 857
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 3 cut(s) 183, 200, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 761
HpyF3I CTNAG 5 cut(s) 86, 472, 487, 544, 687
Hsp92II CATG 5 cut(s) 411, 462, 660, 664, 851
Kzo9I GATC 4 cut(s) 280, 519, 813, 898
LmnI GCTCC 3 cut(s) 173, 851, 859
LpnPI CCDG 7 cut(s) 122, 222, 241, 306, 459, 602, 870
Lsp1109I GCAGC 2 cut(s) 767, 806
LweI GCATC 4 cut(s) 121, 202, 654, 742
MaeI CTAG 3 cut(s) 113, 177, 371
MaeIII GTNAC 2 cut(s) 100, 323
MalI GATC 4 cut(s) 282, 521, 815, 900
MboI GATC 4 cut(s) 280, 519, 813, 898
MboII GAAGA 3 cut(s) 275, 407, 748
MflI RGATCY 2 cut(s) 280, 813
MhlI GDGCHC 1 cut(s) 856
MlsI TGGCCA 1 cut(s) 574
MluCI AATT 4 cut(s) 140, 234, 715, 782
MluNI TGGCCA 1 cut(s) 574
MmeI TCCRAC 1 cut(s) 713
MnlI CCTC 5 cut(s) 95, 184, 391, 518, 682
Mox20I TGGCCA 1 cut(s) 574
Mph1103I ATGCAT 3 cut(s) 460, 662, 827
MscI TGGCCA 1 cut(s) 574
MseI TTAA 3 cut(s) 96, 252, 907
Msp20I TGGCCA 1 cut(s) 574
MspI CCGG 1 cut(s) 589
Mva1269I GAATGC 2 cut(s) 165, 545
MwoI GCNNNNNNNGC 1 cut(s) 761
NdeII GATC 4 cut(s) 280, 519, 813, 898
NlaIII CATG 5 cut(s) 411, 462, 660, 664, 851
NsiI ATGCAT 3 cut(s) 460, 662, 827
NspI RCATGY 1 cut(s) 411
NspV TTCGAA 1 cut(s) 27
PctI GAATGC 2 cut(s) 165, 545
PfeI GAWTC 2 cut(s) 550, 692
PkrI GCNGC 3 cut(s) 619, 757, 796
PsiI TTATAA 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 856
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 2 cut(s) 280, 813
RsaI GTAC 2 cut(s) 358, 610
RsaNI GTAC 2 cut(s) 357, 609
SacI GAGCTC 1 cut(s) 856
SaqAI TTAA 3 cut(s) 96, 252, 907
SatI GCNGC 3 cut(s) 618, 756, 795
Sau3AI GATC 4 cut(s) 280, 519, 813, 898
ScaI AGTACT 1 cut(s) 610
SduI GDGCHC 1 cut(s) 856
SetI ASST 7 cut(s) 13, 87, 178, 378, 760, 807, 856
SfaNI GCATC 4 cut(s) 121, 202, 654, 742
SfuI TTCGAA 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 4 cut(s) 140, 234, 715, 782
SsiI CCGC 1 cut(s) 617
SspI AATATT 1 cut(s) 682
SspMI CTAG 3 cut(s) 113, 177, 371
SstI GAGCTC 1 cut(s) 856
TaaI ACNGT 3 cut(s) 183, 200, 560
TaqI TCGA 1 cut(s) 27
TasI AATT 4 cut(s) 140, 234, 715, 782
TatI WGTACW 1 cut(s) 608
TauI GCSGC 1 cut(s) 620
TfiI GAWTC 2 cut(s) 550, 692
Tru1I TTAA 3 cut(s) 96, 252, 907
Tru9I TTAA 3 cut(s) 96, 252, 907
TscAI CASTG 3 cut(s) 94, 141, 153
TseI GCWGC 2 cut(s) 755, 794
TspDTI ATGAA 5 cut(s) 21, 63, 381, 482, 891
TspRI CASTG 3 cut(s) 94, 141, 153
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 411
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XspI CTAG 3 cut(s) 113, 177, 371
ZrmI AGTACT 1 cut(s) 610
Zsp2I ATGCAT 3 cut(s) 460, 662, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.