Rroxscaffold_6G00397380

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000768
Physical Location & Seq
Forward (+)
19069244 .. 19075075
5832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397380.1

Sequence Viewer

Length: 1506 bp
ATGTCTACCCAATGCTTAGCGAGCAGCGGTAGCCCTACTGCTCAAACTTCACATCGGGATGTTAAAAGACGACAGCAAATTACAAGCCAAGAAGAAGTATACAAAGATAATAGGTGGAAGTTGATCGAGGAGGATTTGAAAAATGTGATTGATGCAGAGTCACTAGAGGCTACACTTGAATTGATTGATGACATCCAACAATTAGATGTTTTCAAAATTTTCACGGACTGCGACGACAGCTTCAAGGATTACCTTTGCGAAGATGTCAAAGGAATGTTGAGTCTATACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACACTCTTGGATGAGGCTCTTGCATTCACCAGCATGCACCTAAAGAACCTTAGCAGATTGCATGTTACTCAAGGCATAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCATAGAATGCAAAGACTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCAGATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATCTTAAAGACATTTCAAGGTGGTGGAAGGATACAGGGTTAGCAAAGAAGTTATCCTTCAGCAGAGACAGACTGATGGAGTTGTTCTTTTGGTCAGTTGGTATAGTGTTTGAACCTCAACTCAGCAATGTTAGAAAAGGGATAACTAAAGTCAGTGCTCTAATAACGACAATTGATGATGTTTATGATGTTTATGGTGCTTTGGATGAACTAGAGCTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGTTGTGGAGATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAACAAGGAGTGAACGTCCTTCCTTACGTGAGAAAAGCTTGGGCAGATATGTGCAAAACTTGGTTAACGGAGGCAAAGTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCAGTGTCAGGGGTGGTCATTCTAGTTCATACCTACTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCAGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCCTGCATCAGACGTGATGGTGTTGTTTTTGATGAGGAATCTGCTCGCAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATGAACAAAGATGGACTACTATTTGGTGCTAATAGAGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAGCAATGAACCTTGCTCGAATTGCCCAATGCATTTACCAATATGGAGATGGGATTGGTGCCCCGGACAAAAGAGCAAAGAACCAGATCCTAGCAGTGATTGTACAACCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

501

Amino Acids

57.62

Weight (kDa)

5.29

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 69 - 142 4.5e-19 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 199 - 440 7.6e-86 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 239 - 440 7.9e-57 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1448
AccB7I CCANNNNNTGG 1 cut(s) 1038
AccI GTMKAC 2 cut(s) 5, 99
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 1471
AcoI YGGCCR 1 cut(s) 1151
AcsI RAATTY 3 cut(s) 216, 521, 1379
AcuI CTGAAG 2 cut(s) 610, 869
AcyI GRCGYC 1 cut(s) 991
AfaI GTAC 2 cut(s) 1004, 1494
AfiI CCNNNNNNNGG 1 cut(s) 1038
AjiI CACGTC 1 cut(s) 1247
AluBI AGCT 9 cut(s) 240, 293, 464, 532, 784, 847, 853, 947, 1358
AluI AGCT 9 cut(s) 240, 293, 464, 532, 784, 847, 853, 947, 1358
Alw21I GWGCWC 1 cut(s) 727
Alw26I GTCTC 2 cut(s) 627, 1161
AlwI GGATC 1 cut(s) 1471
AoxI GGCC 1 cut(s) 1151
ApeKI GCWGC 3 cut(s) 24, 1388, 1391
ApoI RAATTY 3 cut(s) 216, 521, 1379
AsuC2I CCSGG 1 cut(s) 1454
AsuHPI GGTGA 3 cut(s) 337, 1124, 1226
AsuII TTCGAA 1 cut(s) 1193
BaeGI GKGCMC 1 cut(s) 1453
BanI GGYRCC 1 cut(s) 1448
Bbv12I GWGCWC 1 cut(s) 727
BbvI GCAGC 3 cut(s) 36, 1400, 1403
BccI CCATC 6 cut(s) 462, 637, 801, 1244, 1325, 1433
BceAI ACGGC 1 cut(s) 1138
BciVI GTATCC 1 cut(s) 592
BcnI CCSGG 1 cut(s) 1454
BcoDI GTCTC 2 cut(s) 627, 1161
BfaI CTAG 8 cut(s) 164, 458, 465, 533, 779, 1067, 1205, 1481
BfuI GTATCC 1 cut(s) 592
BglII AGATCT 1 cut(s) 568
BisI GCNGC 3 cut(s) 25, 1389, 1392
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 3 cut(s) 26, 1390, 1393
Bme1390I CCNGG 1 cut(s) 1454
BmgBI CACGTC 1 cut(s) 1247
BmiI GGNNCC 1 cut(s) 1450
BmrFI CCNGG 1 cut(s) 1454
BmsI GCATC 4 cut(s) 142, 420, 490, 1248
BplI GAGNNNNNCTC 2 cut(s) 306, 338
Bpu10I CCTNAGC 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 1193
BpuEI CTTGAG 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 1454
BsaAI YACGTR 1 cut(s) 937
BsaBI GATNNNNATC 1 cut(s) 504
BsaHI GRCGYC 1 cut(s) 991
BsaJI CCNNGG 2 cut(s) 301, 1452
BsaXI ACNNNNNCTCC 4 cut(s) 909, 939, 971, 1001
Bsc4I CCNNNNNNNGG 1 cut(s) 1038
Bse3DI GCAATG 3 cut(s) 434, 700, 1401
Bse8I GATNNNNATC 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 301, 1452
BseGI GGATG 5 cut(s) 64, 192, 334, 778, 817
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 1 cut(s) 1038
BseMI GCAATG 3 cut(s) 434, 700, 1401
BseMII CTCAG 2 cut(s) 703, 1116
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 1453
BseXI GCAGC 3 cut(s) 36, 1400, 1403
BshFI GGCC 1 cut(s) 1153
BshNI GGYRCC 1 cut(s) 1448
BsiHKAI GWGCWC 1 cut(s) 727
BsiSI CCGG 1 cut(s) 1454
BslI CCNNNNNNNGG 1 cut(s) 1038
BsmAI GTCTC 2 cut(s) 627, 1161
BsmBI CGTCTC 1 cut(s) 1161
BsmI GAATGC 2 cut(s) 341, 453
BsnI GGCC 1 cut(s) 1153
Bsp119I TTCGAA 1 cut(s) 1193
Bsp1286I GDGCHC 2 cut(s) 727, 1453
Bsp1407I TGTACA 1 cut(s) 1492
Bsp143I GATC 4 cut(s) 123, 568, 1138, 1476
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 1153
BspCNI CTCAG 2 cut(s) 702, 1115
BspLI GGNNCC 1 cut(s) 1450
BspPI GGATC 1 cut(s) 1471
BspT104I TTCGAA 1 cut(s) 1193
BspT107I GGYRCC 1 cut(s) 1448
BsrDI GCAATG 3 cut(s) 434, 700, 1401
BsrGI TGTACA 1 cut(s) 1492
BssECI CCNNGG 2 cut(s) 301, 1452
BssMI GATC 4 cut(s) 123, 568, 1138, 1476
BssNAI GTATAC 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 991
BssT1I CCWWGG 1 cut(s) 301
Bst1107I GTATAC 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 488, 880
BstACI GRCGYC 1 cut(s) 991
BstAUI TGTACA 1 cut(s) 1492
BstBAI YACGTR 1 cut(s) 937
BstBI TTCGAA 1 cut(s) 1193
BstC8I GCNNGC 3 cut(s) 22, 353, 1279
BstDEI CTNAG 5 cut(s) 16, 368, 689, 1102, 1123
BstF5I GGATG 5 cut(s) 64, 192, 334, 778, 817
BstKTI GATC 4 cut(s) 126, 571, 1141, 1479
BstMAI GTCTC 2 cut(s) 627, 1161
BstMBI GATC 4 cut(s) 123, 568, 1138, 1476
BstMWI GCNNNNNNNGC 5 cut(s) 21, 30, 237, 1355, 1412
BstNSI RCATGY 2 cut(s) 355, 383
BstSCI CCNGG 1 cut(s) 1452
BstSLI GKGCMC 1 cut(s) 1453
BstV1I GCAGC 3 cut(s) 36, 1400, 1403
BstX2I RGATCY 2 cut(s) 568, 1476
BstYI RGATCY 2 cut(s) 568, 1476
BstZ17I GTATAC 1 cut(s) 100
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 1 cut(s) 1153
BtrI CACGTC 1 cut(s) 1247
BtsCI GGATG 5 cut(s) 64, 192, 334, 778, 817
BtsI GCAGTG 1 cut(s) 1491
BtsIMutI CAGTG 4 cut(s) 727, 876, 1053, 1491
Cac8I GCNNGC 3 cut(s) 22, 353, 1279
CseI GACGC 1 cut(s) 980
Csp6I GTAC 2 cut(s) 1003, 1493
CviAII CATG 5 cut(s) 352, 380, 419, 1038, 1136
CviQI GTAC 2 cut(s) 1003, 1493
DdeI CTNAG 5 cut(s) 16, 368, 689, 1102, 1123
DpnI GATC 4 cut(s) 125, 570, 1140, 1478
DpnII GATC 4 cut(s) 123, 568, 1138, 1476
EaeI YGGCCR 1 cut(s) 1151
Eco130I CCWWGG 1 cut(s) 301
Eco32I GATATC 1 cut(s) 1044
Eco57I CTGAAG 2 cut(s) 610, 869
EcoRV GATATC 1 cut(s) 1044
EcoT14I CCWWGG 1 cut(s) 301
EcoT22I ATGCAT 3 cut(s) 424, 1039, 1424
ErhI CCWWGG 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 1161
FaeI CATG 5 cut(s) 355, 383, 422, 1041, 1139
FalI AAGNNNNNCTT 4 cut(s) 608, 640, 1011, 1043
FatI CATG 5 cut(s) 351, 379, 418, 1037, 1135
FblI GTMKAC 2 cut(s) 5, 99
Fnu4HI GCNGC 3 cut(s) 25, 1389, 1392
FokI GGATG 5 cut(s) 71, 179, 341, 785, 824
Fsp4HI GCNGC 3 cut(s) 25, 1389, 1392
FspBI CTAG 8 cut(s) 164, 458, 465, 533, 779, 1067, 1205, 1481
GluI GCNGC 3 cut(s) 25, 1389, 1392
HaeIII GGCC 1 cut(s) 1153
HapII CCGG 1 cut(s) 1454
HgaI GACGC 1 cut(s) 980
Hin1I GRCGYC 1 cut(s) 991
Hin1II CATG 5 cut(s) 355, 383, 422, 1041, 1139
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HindIII AAGCTT 2 cut(s) 291, 945
HinfI GANTC 7 cut(s) 158, 280, 415, 829, 1090, 1129, 1271
HpaI GTTAAC 1 cut(s) 975
HpaII CCGG 1 cut(s) 1454
HphI GGTGA 3 cut(s) 337, 1124, 1226
Hpy166II GTNNAC 5 cut(s) 6, 100, 922, 975, 1005
Hpy188I TCNGA 3 cut(s) 838, 1105, 1244
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 5 cut(s) 6, 100, 922, 975, 1005
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 6 cut(s) 305, 589, 634, 901, 938, 1189
HpyCH4III ACNGT 2 cut(s) 488, 880
HpyCH4IV ACGT 3 cut(s) 924, 936, 1246
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 30, 237, 1355, 1412
HpyF3I CTNAG 5 cut(s) 16, 368, 689, 1102, 1123
HpySE526I ACGT 3 cut(s) 924, 936, 1246
Hsp92I GRCGYC 1 cut(s) 991
Hsp92II CATG 5 cut(s) 355, 383, 422, 1041, 1139
KspAI GTTAAC 1 cut(s) 975
Kzo9I GATC 4 cut(s) 123, 568, 1138, 1476
LpnPI CCDG 8 cut(s) 361, 494, 588, 857, 1038, 1249, 1467, 1487
Lsp1109I GCAGC 3 cut(s) 36, 1400, 1403
LweI GCATC 4 cut(s) 142, 420, 490, 1248
MaeI CTAG 8 cut(s) 164, 458, 465, 533, 779, 1067, 1205, 1481
MaeII ACGT 3 cut(s) 924, 936, 1246
MaeIII GTNAC 4 cut(s) 159, 382, 992, 1186
MalI GATC 4 cut(s) 125, 570, 1140, 1478
MboI GATC 4 cut(s) 123, 568, 1138, 1476
MboII GAAGA 6 cut(s) 104, 272, 1031, 1327, 1330, 1353
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 2 cut(s) 568, 1476
MhlI GDGCHC 2 cut(s) 727, 1453
MluCI AATT 9 cut(s) 78, 179, 200, 216, 521, 738, 1294, 1379, 1410
MlyI GAGTC 3 cut(s) 167, 289, 424
MmeI TCCRAC 2 cut(s) 220, 1292
MnlI CCTC 9 cut(s) 121, 124, 160, 325, 472, 693, 973, 1205, 1261
Mph1103I ATGCAT 3 cut(s) 424, 1039, 1424
MseI TTAA 5 cut(s) 63, 573, 974, 1116, 1504
MslI CAYNNNNRTG 3 cut(s) 57, 350, 1117
MspA1I CMGCKG 2 cut(s) 27, 847
MspI CCGG 1 cut(s) 1454
MspR9I CCNGG 1 cut(s) 1454
MunI CAATTG 1 cut(s) 738
Mva1269I GAATGC 2 cut(s) 341, 453
MwoI GCNNNNNNNGC 5 cut(s) 21, 30, 237, 1355, 1412
NciI CCSGG 1 cut(s) 1454
NdeII GATC 4 cut(s) 123, 568, 1138, 1476
NlaIII CATG 5 cut(s) 355, 383, 422, 1041, 1139
NlaIV GGNNCC 1 cut(s) 1450
NmuCI GTSAC 2 cut(s) 159, 992
NsiI ATGCAT 3 cut(s) 424, 1039, 1424
NspI RCATGY 2 cut(s) 355, 383
NspV TTCGAA 1 cut(s) 1193
PaeI GCATGC 1 cut(s) 355
PctI GAATGC 2 cut(s) 341, 453
PfeI GAWTC 4 cut(s) 829, 1090, 1129, 1271
PflMI CCANNNNNTGG 1 cut(s) 1038
PkrI GCNGC 3 cut(s) 26, 1390, 1393
PleI GAGTC 3 cut(s) 166, 288, 423
PpsI GAGTC 3 cut(s) 166, 288, 423
Ppu21I YACGTR 1 cut(s) 937
PspN4I GGNNCC 1 cut(s) 1450
PsuI RGATCY 2 cut(s) 568, 1476
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 2 cut(s) 1004, 1494
RsaNI GTAC 2 cut(s) 1003, 1493
RseI CAYNNNNRTG 3 cut(s) 57, 350, 1117
SaqAI TTAA 5 cut(s) 63, 573, 974, 1116, 1504
SatI GCNGC 3 cut(s) 25, 1389, 1392
Sau3AI GATC 4 cut(s) 123, 568, 1138, 1476
SchI GAGTC 3 cut(s) 167, 289, 424
ScrFI CCNGG 1 cut(s) 1454
SduI GDGCHC 2 cut(s) 727, 1453
SfaNI GCATC 4 cut(s) 142, 420, 490, 1248
SfuI TTCGAA 1 cut(s) 1193
SmiMI CAYNNNNRTG 3 cut(s) 57, 350, 1117
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
SphI GCATGC 1 cut(s) 355
Sse9I AATT 9 cut(s) 78, 179, 200, 216, 521, 738, 1294, 1379, 1410
SsiI CCGC 1 cut(s) 27
SspMI CTAG 8 cut(s) 164, 458, 465, 533, 779, 1067, 1205, 1481
StyD4I CCNGG 1 cut(s) 1452
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 488, 880
TaiI ACGT 3 cut(s) 927, 939, 1249
TaqI TCGA 3 cut(s) 126, 1193, 1408
TasI AATT 9 cut(s) 78, 179, 200, 216, 521, 738, 1294, 1379, 1410
TatI WGTACW 2 cut(s) 1002, 1492
TfiI GAWTC 4 cut(s) 829, 1090, 1129, 1271
Tru1I TTAA 5 cut(s) 63, 573, 974, 1116, 1504
Tru9I TTAA 5 cut(s) 63, 573, 974, 1116, 1504
TscAI CASTG 4 cut(s) 727, 883, 1053, 1491
TseFI GTSAC 2 cut(s) 159, 992
TseI GCWGC 3 cut(s) 24, 1388, 1391
Tsp45I GTSAC 2 cut(s) 159, 992
TspDTI ATGAA 8 cut(s) 285, 789, 900, 912, 1061, 1122, 1337, 1412
TspGWI ACGGA 2 cut(s) 239, 992
TspRI CASTG 4 cut(s) 727, 883, 1053, 1491
Van91I CCANNNNNTGG 1 cut(s) 1038
XapI RAATTY 3 cut(s) 216, 521, 1379
XceI RCATGY 2 cut(s) 355, 383
XcmI CCANNNNNNNNNTGG 1 cut(s) 1436
XmiI GTMKAC 2 cut(s) 5, 99
XspI CTAG 8 cut(s) 164, 458, 465, 533, 779, 1067, 1205, 1481
Zsp2I ATGCAT 3 cut(s) 424, 1039, 1424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.