Rh2BG563300

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000768
Physical Location & Seq
Reverse (-)
77478329 .. 77480156
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG563300.1

Sequence Viewer

Length: 576 bp
ATGGATTGTGACGGCAGCTTTAAGGATTGCCTTTGCAAAGATGTCAAAGACATGCTAAGTCTGTATGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCCTCTTGGAAGAGGCTCTTGCATTCACCAGCATGCACCTAAAGAACCTCAGTAGATTGCATGTTACTCAAGACAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGATTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCATATGCAAGTCAGGTGCTATTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATTTTAAAGATATTTCAAGTAATTTGATTGAGAGTAGTTGGAAGAAGGTGAACAAAGATGGACTAATATTTGGTGCCAATAGTGCTTCTCCATTCACAAAAGAATTTGTAGCAGCAGCAACAAACCTTGCTCGAATTGCCCAATGTATCTACCAATATGGAGACGGGATTGGTGCCCCGGATAAAAGAGTAAAGAATCGGATCCTAGCAGTGATTGTACAACCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

191

Amino Acids

21.65

Weight (kDa)

6.52

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 2 - 68 1.9e-17 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 419, 518
AclWI GGATC 2 cut(s) 541, 554
AcsI RAATTY 2 cut(s) 299, 449
AfaI GTAC 1 cut(s) 564
AgsI TTSAA 3 cut(s) 89, 299, 363
AluBI AGCT 4 cut(s) 18, 71, 242, 310
AluI AGCT 4 cut(s) 18, 71, 242, 310
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 2 cut(s) 541, 554
ApeKI GCWGC 3 cut(s) 15, 458, 461
ApoI RAATTY 2 cut(s) 299, 449
AsuC2I CCSGG 1 cut(s) 524
AsuHPI GGTGA 2 cut(s) 115, 406
BaeGI GKGCMC 1 cut(s) 523
BamHI GGATCC 1 cut(s) 546
BanI GGYRCC 2 cut(s) 419, 518
BbvI GCAGC 3 cut(s) 27, 470, 473
BccI CCATC 2 cut(s) 240, 398
BceAI ACGGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 524
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 3 cut(s) 243, 311, 551
BisI GCNGC 3 cut(s) 16, 459, 462
BlsI GCNGC 3 cut(s) 17, 460, 463
Bme1390I CCNGG 1 cut(s) 524
BmiI GGNNCC 3 cut(s) 421, 520, 548
BmrFI CCNGG 1 cut(s) 524
BmsI GCATC 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 84, 116
BpuEI CTTGAG 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 79, 522
Bse3DI GCAATG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 79, 522
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 523
BseXI GCAGC 3 cut(s) 27, 470, 473
BshNI GGYRCC 2 cut(s) 419, 518
BsiSI CCGG 1 cut(s) 524
BsmAI GTCTC 1 cut(s) 501
BsmBI CGTCTC 1 cut(s) 501
BsmI GAATGC 2 cut(s) 119, 231
Bsp1286I GDGCHC 1 cut(s) 523
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 1 cut(s) 546
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 3 cut(s) 421, 520, 548
BspPI GGATC 2 cut(s) 541, 554
BspT107I GGYRCC 2 cut(s) 419, 518
BsrDI GCAATG 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 562
BssECI CCNNGG 2 cut(s) 79, 522
BssMI GATC 1 cut(s) 546
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 562
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 56, 146
BstKTI GATC 1 cut(s) 549
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 1 cut(s) 546
BstMWI GCNNNNNNNGC 2 cut(s) 428, 482
BstNSI RCATGY 3 cut(s) 55, 133, 161
BstSCI CCNGG 1 cut(s) 522
BstSLI GKGCMC 1 cut(s) 523
BstV1I GCAGC 3 cut(s) 27, 470, 473
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 563
CviAII CATG 4 cut(s) 52, 130, 158, 197
CviJI RGCY 5 cut(s) 18, 71, 113, 242, 310
CviKI_1 RGCY 5 cut(s) 18, 71, 113, 242, 310
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 2 cut(s) 56, 146
DpnI GATC 1 cut(s) 548
DpnII GATC 1 cut(s) 546
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 4 cut(s) 55, 133, 161, 200
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FatI CATG 4 cut(s) 51, 129, 157, 196
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 16, 459, 462
Fsp4HI GCNGC 3 cut(s) 16, 459, 462
FspBI CTAG 3 cut(s) 243, 311, 551
GluI GCNGC 3 cut(s) 16, 459, 462
HapII CCGG 1 cut(s) 524
Hin1II CATG 4 cut(s) 55, 133, 161, 200
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 2 cut(s) 193, 541
HpaII CCGG 1 cut(s) 524
HphI GGTGA 2 cut(s) 115, 406
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 1 cut(s) 546
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 2 cut(s) 83, 385
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 9 cut(s) 36, 119, 133, 157, 200, 217, 229, 281, 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 482
HpyF3I CTNAG 2 cut(s) 56, 146
Hsp92II CATG 4 cut(s) 55, 133, 161, 200
Kzo9I GATC 1 cut(s) 546
LpnPI CCDG 3 cut(s) 139, 272, 537
Lsp1109I GCAGC 3 cut(s) 27, 470, 473
LweI GCATC 1 cut(s) 198
MaeI CTAG 3 cut(s) 243, 311, 551
MaeIII GTNAC 2 cut(s) 8, 160
MalI GATC 1 cut(s) 548
MboI GATC 1 cut(s) 546
MboII GAAGA 2 cut(s) 119, 400
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 4 cut(s) 299, 367, 449, 480
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 4 cut(s) 103, 110, 155, 250
Mph1103I ATGCAT 1 cut(s) 202
MseI TTAA 2 cut(s) 21, 351
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 524
Mva1269I GAATGC 2 cut(s) 119, 231
MwoI GCNNNNNNNGC 2 cut(s) 428, 482
NciI CCSGG 1 cut(s) 524
NdeI CATATG 1 cut(s) 277
NdeII GATC 1 cut(s) 546
NlaIII CATG 4 cut(s) 55, 133, 161, 200
NlaIV GGNNCC 3 cut(s) 421, 520, 548
NmuCI GTSAC 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 202
NspI RCATGY 3 cut(s) 55, 133, 161
PaeI GCATGC 1 cut(s) 133
PctI GAATGC 2 cut(s) 119, 231
PfeI GAWTC 1 cut(s) 541
PkrI GCNGC 3 cut(s) 17, 460, 463
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PspN4I GGNNCC 3 cut(s) 421, 520, 548
PsuI RGATCY 1 cut(s) 546
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 2 cut(s) 21, 351
SatI GCNGC 3 cut(s) 16, 459, 462
Sau3AI GATC 1 cut(s) 546
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 524
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
SphI GCATGC 1 cut(s) 133
Sse9I AATT 4 cut(s) 299, 367, 449, 480
SspI AATATT 1 cut(s) 414
SspMI CTAG 3 cut(s) 243, 311, 551
StyD4I CCNGG 1 cut(s) 522
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 478
TasI AATT 4 cut(s) 299, 367, 449, 480
TatI WGTACW 1 cut(s) 562
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 2 cut(s) 21, 351
Tru9I TTAA 2 cut(s) 21, 351
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 3 cut(s) 15, 458, 461
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 63, 81
TspRI CASTG 1 cut(s) 561
XapI RAATTY 2 cut(s) 299, 449
XceI RCATGY 3 cut(s) 55, 133, 161
XspI CTAG 3 cut(s) 243, 311, 551
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.