AT3G25830

synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
9447409 .. 9451037
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25830.1

Sequence Viewer

Length: 1803 bp
ATGGCAACTTTACGTATAAGTTCAGCTCTTATTTACCAAAATACCCTCACCCACCATTTTCGTCTTCGACGTCCTCACCGTTTCGTATGCAAGTCCATGACCAAAACGACGCCGGATACTACTCTTGTTGAACTCAGTCGACGCTCCGGAAACTATCAACCTTCACCGTGGAACCATTGTTATCTCCTCTCCATCGAGAATAAATATGCGAGTGAAACAGAAGTAATAACTAGAGATGTGTTGAAGAAAAAAGTGAAGAGCATGCTTGATGATGAGAAGAAGAGCCGTCTCGAGCAATTAGAGCTCATCGATGATCTGCAAAAACTTGGGGTTTCGTATCATTTTGAGATAGAAATAAATGATACTTTGACAGATCTTCATCTTAAAATGGGAAGAAATTGCTGGAAATGTGACAAGGAAGAAGATTTACATGCAACCTCACTCGAATTCCGACTTCTTAGACAACATGGTTTTGATGTCTCAGAAAATATATTTGATGTGATCATCGACCAAATAGAAAGTAATACGTTCAAGACCAACAATATAAACGGTATCATTTCTTTGTACGAAGCGTCGTATCTTTCCACGAAATCGGATACTAAATTGCATAAAGTCATCAGACCTTTTGCAACAGAACAAATAAGAAAATTTGTTGATGATGAAGATACTAAAAACATTGAGGTACGAGAGAAGGCGTATCATGCCTTAGAAATGCCGTACCATTGGAGAATGAGAAGGCTAGACACGAGATGGTACATAGATGCATATGAGAAGAAACATGACATGAATCTTGTCTTGATCGAGTTTGCAAAAATTGATTTCAATATCGTACAAGCTGCTCATCAAGAAGATCTCAAATACGTTTCAAGATGGTGGAAGGATACATGTTTGACTAACCAACTTCCCTTTGTAAGAGATAGAATAGTCGAGAACTATTTTTGGACCGTTGGATTAATATACGAACCACAATTTGGATATATCCGACGGATCATGACTATAGTTAATGCCCTTGTTACAACCATTGACGACATCTACGATATCTATGGCACTCTTGAAGAACTAGAACTATTCACTTCCATGGTTGAAAATTGGGATGTAAATCGTCTTGGTGAGCTTCCCGAGTATATGAGGTTGTGTTTTCTTATTTTATACAATGAAATCAATGGCATTGGATGTGATATACTCAAATATAAAAAGATTGACGTCATTCCTTACCTCAAGAAATCGTGGGCAGATTTATGTAGAACATATCTAGTGGAAGCAAAGTGGTACAAAAGAGGATACAAACCAAGCTTGGAAGAATATATGCAAAATGCTTGGATTTCAATTTCTGCCCCAACAATATTGATCCACTTTTACTGCGTTTTCTCTGACCAAATCTCAGTTCAAAACTTAGAGACTTTGTCTCAACACCGACAACACATCGTCCGATGCTCAGCCACCGTTCTTCGTTTAGCTAACGACCTTGGAACTTCGCCAACTGAATTGGCGAGAGGAGACGTTCTCAAATCGGTCCAATGTTACATGCATGAGACCGGAGCTTCAGAGGAAAGGGCACGTGATCACGTGCATCAGATGATTAGCGACATGTGGGACGACATGAACTCCGAAACAAAAACGGCATGCAATTCTTCGTCACGTTCTAGAGGTTTTAAGGAAGCTGCAATGAATCTGGCACGCATGTCGCAATGCATGTATCAATATGGTGATGGTCATGGATGCCCTGAAAAAGCCAAGACCATTGATCGTGTCCAATCCTTACTCGTTGATCCAATTCCATTAGATGTAAATCGTCTTGGTTGA

Protein Analysis

600

Amino Acids

70.45

Weight (kDa)

6.23

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 57 - 236 6.1e-42 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 293 - 533 3.2e-90 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 335 - 533 9e-57 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 73, 1206
AccB7I CCANNNNNTGG 1 cut(s) 971
AccI GTMKAC 1 cut(s) 139
AccIII TCCGGA 1 cut(s) 146
AclWI GGATC 3 cut(s) 995, 1342, 1763
AcsI RAATTY 2 cut(s) 446, 647
AcuI CTGAAG 1 cut(s) 1527
AcvI CACGTG 2 cut(s) 1559, 1567
AcyI GRCGYC 3 cut(s) 70, 110, 1203
AfaI GTAC 6 cut(s) 566, 684, 719, 755, 831, 1271
AfiI CCNNNNNNNGG 1 cut(s) 971
AflIII ACRYGT 2 cut(s) 884, 1587
AgsI TTSAA 9 cut(s) 131, 244, 532, 823, 867, 1055, 1085, 1326, 1388
AjuI GAANNNNNNNTTGG 4 cut(s) 954, 986, 1368, 1400
AluBI AGCT 8 cut(s) 26, 304, 836, 1114, 1293, 1457, 1541, 1661
AluI AGCT 8 cut(s) 26, 304, 836, 1114, 1293, 1457, 1541, 1661
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 6 cut(s) 293, 484, 1391, 1410, 1491, 1526
AlwI GGATC 3 cut(s) 995, 1342, 1763
Ama87I CYCGRG 2 cut(s) 290, 1118
Aor13HI TCCGGA 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 836, 1661
ApoI RAATTY 2 cut(s) 446, 647
AseI ATTAAT 1 cut(s) 953
AspS9I GGNCC 2 cut(s) 942, 1513
AsuHPI GGTGA 5 cut(s) 40, 68, 156, 1121, 1718
AvaI CYCGRG 2 cut(s) 290, 1118
AvaII GGWCC 2 cut(s) 942, 1513
BaeGI GKGCMC 1 cut(s) 1558
BanII GRGCYC 1 cut(s) 306
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BauI CACGAG 1 cut(s) 745
BbrPI CACGTG 2 cut(s) 1559, 1567
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 823, 1648
BccI CCATC 4 cut(s) 200, 744, 864, 1703
BceAI ACGGC 3 cut(s) 270, 700, 1635
BcgI CGANNNNNNTGC 2 cut(s) 1665, 1699
BciVI GTATCC 4 cut(s) 109, 589, 874, 1274
BclI TGATCA 2 cut(s) 501, 1561
BcoDI GTCTC 6 cut(s) 293, 484, 1391, 1410, 1491, 1526
BfaI CTAG 5 cut(s) 231, 740, 1061, 1253, 1644
BfmI CTRYAG 1 cut(s) 996
BfuI GTATCC 4 cut(s) 109, 589, 874, 1274
BglII AGATCT 2 cut(s) 373, 850
BisI GCNGC 2 cut(s) 837, 1662
BlpI GCTNAGC 1 cut(s) 1435
BlsI GCNGC 2 cut(s) 838, 1663
Bme18I GGWCC 2 cut(s) 942, 1513
BmeT110I CYCGRG 2 cut(s) 290, 1118
BmgT120I GGNCC 2 cut(s) 942, 1513
BmiI GGNNCC 1 cut(s) 173
BmsI GCATC 4 cut(s) 751, 1421, 1579, 1709
BpiI GAAGAC 1 cut(s) 56
BplI GAGNNNNNCTC 2 cut(s) 1488, 1520
Bpu1102I GCTNAGC 1 cut(s) 1435
BpuEI CTTGAG 1 cut(s) 1202
Bsa29I ATCGAT 1 cut(s) 309
BsaAI YACGTR 3 cut(s) 14, 1559, 1567
BsaBI GATNNNNATC 3 cut(s) 378, 1098, 1788
BsaHI GRCGYC 3 cut(s) 70, 110, 1203
BsaI GGTCTC 1 cut(s) 1526
BsaJI CCNNGG 3 cut(s) 167, 1077, 1465
BsaWI WCCGGW 2 cut(s) 146, 1535
BsaXI ACNNNNNCTCC 2 cut(s) 1589, 1619
Bsc4I CCNNNNNNNGG 1 cut(s) 971
Bse3DI GCAATG 2 cut(s) 1671, 1694
Bse8I GATNNNNATC 3 cut(s) 378, 1098, 1788
BseAI TCCGGA 1 cut(s) 146
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 167, 1077, 1465
BseGI GGATG 3 cut(s) 1099, 1178, 1724
BseJI GATNNNNATC 3 cut(s) 378, 1098, 1788
BseLI CCNNNNNNNGG 1 cut(s) 971
BseMI GCAATG 2 cut(s) 1671, 1694
BseMII CTCAG 4 cut(s) 148, 495, 1395, 1449
BseRI GAGGAG 2 cut(s) 176, 1509
BseSI GKGCMC 1 cut(s) 1558
BseXI GCAGC 2 cut(s) 823, 1648
BshVI ATCGAT 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 2 cut(s) 290, 1118
BsiSI CCGG 3 cut(s) 113, 147, 1536
BslFI GGGAC 1 cut(s) 1607
BslI CCNNNNNNNGG 1 cut(s) 971
BsmAI GTCTC 6 cut(s) 293, 484, 1391, 1410, 1491, 1526
BsmBI CGTCTC 2 cut(s) 293, 1491
BsmFI GGGAC 1 cut(s) 1607
Bso31I GGTCTC 1 cut(s) 1526
BsoBI CYCGRG 2 cut(s) 290, 1118
Bsp1286I GDGCHC 2 cut(s) 306, 1558
Bsp13I TCCGGA 1 cut(s) 146
Bsp1720I GCTNAGC 1 cut(s) 1435
Bsp19I CCATGG 1 cut(s) 1077
BspCNI CTCAG 4 cut(s) 147, 494, 1394, 1448
BspDI ATCGAT 1 cut(s) 309
BspEI TCCGGA 1 cut(s) 146
BspHI TCATGA 1 cut(s) 990
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 3 cut(s) 995, 1342, 1763
BspQI GCTCTTC 2 cut(s) 251, 275
BspTNI GGTCTC 1 cut(s) 1526
BsrDI GCAATG 2 cut(s) 1671, 1694
BssECI CCNNGG 3 cut(s) 167, 1077, 1465
BssNI GRCGYC 3 cut(s) 70, 110, 1203
BssSI CACGAG 1 cut(s) 745
BssT1I CCWWGG 2 cut(s) 1077, 1465
Bst2BI CACGAG 1 cut(s) 745
Bst4CI ACNGT 5 cut(s) 80, 168, 551, 946, 1444
Bst6I CTCTTC 2 cut(s) 251, 275
BstACI GRCGYC 3 cut(s) 70, 110, 1203
BstBAI YACGTR 3 cut(s) 14, 1559, 1567
BstC8I GCNNGC 3 cut(s) 263, 1624, 1678
BstDEI CTNAG 7 cut(s) 134, 458, 481, 706, 1381, 1393, 1435
BstDSI CCRYGG 2 cut(s) 167, 1077
BstF5I GGATG 3 cut(s) 1099, 1178, 1724
BstMAI GTCTC 6 cut(s) 293, 484, 1391, 1410, 1491, 1526
BstMWI GCNNNNNNNGC 2 cut(s) 301, 701
BstNSI RCATGY 8 cut(s) 265, 434, 888, 1528, 1591, 1626, 1684, 1696
BstSFI CTRYAG 1 cut(s) 996
BstSLI GKGCMC 1 cut(s) 1558
BstSNI TACGTA 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 823, 1648
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 2 cut(s) 373, 850
BstYI RGATCY 2 cut(s) 373, 850
Bsu15I ATCGAT 1 cut(s) 309
BsuI GTATCC 4 cut(s) 109, 589, 874, 1274
BsuTUI ATCGAT 1 cut(s) 309
BtgI CCRYGG 2 cut(s) 167, 1077
BtsCI GGATG 3 cut(s) 1099, 1178, 1724
Cac8I GCNNGC 3 cut(s) 263, 1624, 1678
CciI TCATGA 1 cut(s) 990
Cfr13I GGNCC 2 cut(s) 942, 1513
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 3 cut(s) 118, 150, 561
Csp6I GTAC 6 cut(s) 565, 683, 718, 754, 830, 1270
CviQI GTAC 6 cut(s) 565, 683, 718, 754, 830, 1270
DdeI CTNAG 7 cut(s) 134, 458, 481, 706, 1381, 1393, 1435
Eam1104I CTCTTC 2 cut(s) 251, 275
EarI CTCTTC 2 cut(s) 251, 275
Ecl136II GAGCTC 1 cut(s) 304
Eco105I TACGTA 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 1077, 1465
Eco24I GRGCYC 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 1526
Eco32I GATATC 1 cut(s) 1039
Eco47I GGWCC 2 cut(s) 942, 1513
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 1527
Eco72I CACGTG 2 cut(s) 1559, 1567
Eco88I CYCGRG 2 cut(s) 290, 1118
EcoICRI GAGCTC 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 446
EcoRV GATATC 1 cut(s) 1039
EcoT14I CCWWGG 2 cut(s) 1077, 1465
EcoT22I ATGCAT 3 cut(s) 766, 1530, 1694
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 2 cut(s) 1077, 1465
Esp3I CGTCTC 2 cut(s) 293, 1491
FaqI GGGAC 1 cut(s) 1607
FauNDI CATATG 1 cut(s) 766
FbaI TGATCA 2 cut(s) 501, 1561
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 837, 1662
FokI GGATG 3 cut(s) 1106, 1185, 1731
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 837, 1662
FspBI CTAG 5 cut(s) 231, 740, 1061, 1253, 1644
GluI GCNGC 2 cut(s) 837, 1662
HapII CCGG 3 cut(s) 113, 147, 1536
HgaI GACGC 3 cut(s) 118, 150, 561
Hin1I GRCGYC 3 cut(s) 70, 110, 1203
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HindIII AAGCTT 1 cut(s) 1291
HinfI GANTC 2 cut(s) 787, 1669
HpaII CCGG 3 cut(s) 113, 147, 1536
HphI GGTGA 5 cut(s) 40, 68, 156, 1121, 1718
Hpy166II GTNNAC 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 140
Hpy99I CGWCG 5 cut(s) 72, 112, 144, 577, 987
HpyAV CCTTC 4 cut(s) 171, 685, 729, 871
HpyCH4III ACNGT 5 cut(s) 80, 168, 551, 946, 1444
HpyCH4IV ACGT 9 cut(s) 13, 70, 527, 861, 1203, 1500, 1558, 1566, 1639
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 701
HpyF3I CTNAG 7 cut(s) 134, 458, 481, 706, 1381, 1393, 1435
HpySE526I ACGT 9 cut(s) 13, 70, 527, 861, 1203, 1500, 1558, 1566, 1639
Hsp92I GRCGYC 3 cut(s) 70, 110, 1203
Kpn2I TCCGGA 1 cut(s) 146
Ksp22I TGATCA 2 cut(s) 501, 1561
LguI GCTCTTC 2 cut(s) 251, 275
LmnI GCTCC 2 cut(s) 149, 1538
LpnPI CCDG 6 cut(s) 126, 160, 388, 1549, 1658, 1737
Lsp1109I GCAGC 2 cut(s) 823, 1648
LweI GCATC 4 cut(s) 751, 1421, 1579, 1709
MaeI CTAG 5 cut(s) 231, 740, 1061, 1253, 1644
MaeII ACGT 9 cut(s) 13, 70, 527, 861, 1203, 1500, 1558, 1566, 1639
MaeIII GTNAC 4 cut(s) 410, 1012, 1520, 1635
MflI RGATCY 2 cut(s) 373, 850
MhlI GDGCHC 2 cut(s) 306, 1558
MmeI TCCRAC 3 cut(s) 475, 928, 1006
Mph1103I ATGCAT 3 cut(s) 766, 1530, 1694
MroI TCCGGA 1 cut(s) 146
MseI TTAA 4 cut(s) 384, 953, 1002, 1653
MslI CAYNNNNRTG 1 cut(s) 1076
MspI CCGG 3 cut(s) 113, 147, 1536
MwoI GCNNNNNNNGC 2 cut(s) 301, 701
NcoI CCATGG 1 cut(s) 1077
NdeI CATATG 1 cut(s) 766
NlaIV GGNNCC 1 cut(s) 173
NmuCI GTSAC 2 cut(s) 410, 1635
NsiI ATGCAT 3 cut(s) 766, 1530, 1694
NspI RCATGY 8 cut(s) 265, 434, 888, 1528, 1591, 1626, 1684, 1696
PaeI GCATGC 2 cut(s) 265, 1626
PaeR7I CTCGAG 1 cut(s) 290
PagI TCATGA 1 cut(s) 990
PciI ACATGT 2 cut(s) 884, 1587
PciSI GCTCTTC 2 cut(s) 251, 275
PcsI WCGNNNNNNNCGW 3 cut(s) 67, 76, 1032
PfeI GAWTC 2 cut(s) 787, 1669
PflFI GACNNNGTC 1 cut(s) 1402
PflMI CCANNNNNTGG 1 cut(s) 971
PkrI GCNGC 2 cut(s) 838, 1663
PmaCI CACGTG 2 cut(s) 1559, 1567
PmlI CACGTG 2 cut(s) 1559, 1567
Ppu21I YACGTR 3 cut(s) 14, 1559, 1567
PscI ACATGT 2 cut(s) 884, 1587
PshBI ATTAAT 1 cut(s) 953
Psp124BI GAGCTC 1 cut(s) 306
PspCI CACGTG 2 cut(s) 1559, 1567
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 2 cut(s) 942, 1513
PsuI RGATCY 2 cut(s) 373, 850
PsyI GACNNNGTC 1 cut(s) 1402
RsaI GTAC 6 cut(s) 566, 684, 719, 755, 831, 1271
RsaNI GTAC 6 cut(s) 565, 683, 718, 754, 830, 1270
RseI CAYNNNNRTG 1 cut(s) 1076
SacI GAGCTC 1 cut(s) 306
SalI GTCGAC 1 cut(s) 138
SapI GCTCTTC 2 cut(s) 251, 275
SaqAI TTAA 4 cut(s) 384, 953, 1002, 1653
SatI GCNGC 2 cut(s) 837, 1662
Sau96I GGNCC 2 cut(s) 942, 1513
SduI GDGCHC 2 cut(s) 306, 1558
SfaNI GCATC 4 cut(s) 751, 1421, 1579, 1709
SfcI CTRYAG 1 cut(s) 996
Sfr274I CTCGAG 1 cut(s) 290
SinI GGWCC 2 cut(s) 942, 1513
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 1076
SmlI CTYRAG 2 cut(s) 290, 1217
SmoI CTYRAG 2 cut(s) 290, 1217
SnaBI TACGTA 1 cut(s) 14
SphI GCATGC 2 cut(s) 265, 1626
SspI AATATT 1 cut(s) 1344
SspMI CTAG 5 cut(s) 231, 740, 1061, 1253, 1644
SstI GAGCTC 1 cut(s) 306
StyI CCWWGG 2 cut(s) 1077, 1465
TaaI ACNGT 5 cut(s) 80, 168, 551, 946, 1444
TaiI ACGT 9 cut(s) 16, 73, 530, 864, 1206, 1503, 1561, 1569, 1642
TaqI TCGA 9 cut(s) 67, 139, 195, 291, 309, 444, 507, 801, 927
TaqII GACCGA 1 cut(s) 1501
TfiI GAWTC 2 cut(s) 787, 1669
Tru1I TTAA 4 cut(s) 384, 953, 1002, 1653
Tru9I TTAA 4 cut(s) 384, 953, 1002, 1653
TseFI GTSAC 2 cut(s) 410, 1635
TseI GCWGC 2 cut(s) 836, 1661
Tsp45I GTSAC 2 cut(s) 410, 1635
TspDTI ATGAA 6 cut(s) 368, 675, 800, 1170, 1616, 1682
TspGWI ACGGA 1 cut(s) 1000
Tth111I GACNNNGTC 1 cut(s) 1402
Van91I CCANNNNNTGG 1 cut(s) 971
VpaK11BI GGWCC 2 cut(s) 942, 1513
VspI ATTAAT 1 cut(s) 953
XapI RAATTY 2 cut(s) 446, 647
XbaI TCTAGA 1 cut(s) 1643
XceI RCATGY 8 cut(s) 265, 434, 888, 1528, 1591, 1626, 1684, 1696
XhoI CTCGAG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 5 cut(s) 231, 740, 1061, 1253, 1644
ZraI GACGTC 2 cut(s) 71, 1204
Zsp2I ATGCAT 3 cut(s) 766, 1530, 1694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.