MD17G1090100.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000768
Physical Location & Seq
Reverse (-)
7443256 .. 7452020
8765 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1090100.v1.1.491

Sequence Viewer

Length: 1779 bp
ATGAACCAAGACAGCACGAGAAACACGCATACCGTGCATCATTGCCTATATATATGTCCATCTTTTGATATCAAATTCACATACATACTTCTAGTAGCTTCAGCTTCTTGCATTCAGCCACATTGCTCCTCGATGCATAATAATACGCCTCTTCGAAGCCCTGGAACCTACAAGCCAAGCATATGGAGTTACGATTTTATTCAGTCCTTGAAGATTGATCATAATACCCTACAGGATAAAGTATACAAGGATGGGTGGAAGTTCATTGAAGAGAAAGTTAAGCATATGATTGATTACGATGATGATGATACCAACACGTTGACTGCGCTTGAGCTCATTGATGACATCCAACGGTTAGGTTTGGGATATCACTTTGAAGAGGACATAACGAGAGCCCTTGATAAAATATTGAACAACATTGATGGCCAAGGAACCGACCAGAGTCTCCACCTCACTGCTCTCAGCTTTAGGCTCCTTAGACAACATGGATTTGAGGTCTCCCAAGATGTATTCAGTAAGTTCACGGACGGTAATGGAAGTTTCAAGGCATGGCTTTGCAAGGATGTAAAAGGAATGTCGAGTCTGTACGAAGCTTCATATTTTGCTTTCGAAGGAGAGAGCCTGTTGGATGAGGGCCTTGCATTCTCAACCATTTGTCTCAAGAACCTCAGTGGAGCTAATGTTACCAAAGGACTAGCAGAACATGTGAGTCATGCACTGGAACTTCCACTACACCATAGAATGCAAAGATTAGAAGCTAGACGGTATATTGAGGCATACAATAAAAGGCCCGATGCAAATCAGGCGCTACTTGAAATTGCCAAGCGAGATTTTAACTGGGTGCAATGCACACTCCAAAGGGATCTTCAAGAAGTATCGAGGTGGTGGGTGGATATAGGCTTGGCAAAAAAGTTGAGCTTCATCAGAGACAGATTGATGGAGTGCTTTTTTTGGTCGGTTGGAATCGTCTTTGAACCTCAACACAGTCATGCCAGGAAAGGGCTGGCAAAAGTGGCTGCTCTAGTAACCACAATTGATGATGTCTATGATGTTTATGGTACTTTGGATGAACTAGAGCTTTTTACATCTGCAGTTGAAAGATGGGATATCAAAGCTATACAAACTCTCCCAAATTACATGAAGCTTTGTTTTCTAGCTCTTTACAACACAGTGAATGAGATGGTTTATGACACCTTAAAGGAACAAGGAGAAAACATTCTCCCTTATGTCACAAAAGCTTGGGCTGATTTGTGCAAAGCATTTCTAAAGGAGACAACGTGGTGCTATAACAAGCACACACCCACATTTGAAGAATATATTGACAATGCATGGATATCAGTCTCAGGGGTGGTGTTCTTAGTTCATACATATTTTCTCCTCAACCCAAAGATCACAAAGCAAGCACTTGAATGCTTAGAGAATCATCACAGCCTCTTGCGTTGGCCATCTCTTATTTTCCGGCTTTCCAATGATTTGAGTACTTCAGCAGCAGAAGTGGAGAGAGGAGAAACTGCGAACTCAATCTCATGCATGATGCGTGGCAGTCTAAATGTTTCTGAGGAATCTGCTCGTCAATATATAAGTAATTTGGTTGAAAATAGTTGGAAGAAGCTGAACAAAGATGGAGCTTCTGCATCTCCATTTACAAAGCAATTTGTAAAAGCAGCAATAAACCTTGCTCGGATTTCCCAATGCGTATACCAATATGGTGATGGGCATGGAGCTCCAGACACAAGAGCAAAGAATCGAATCATATCAGTGATTGTCGATCCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

593

Amino Acids

67.72

Weight (kDa)

5.97

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 61 - 240 5.7e-51 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 298 - 537 5.4e-92 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 337 - 537 4e-57 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 243, 1698
AclWI GGATC 2 cut(s) 870, 1763
AcoI YGGCCR 2 cut(s) 424, 1442
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 2 cut(s) 84, 1467
AfaI GTAC 3 cut(s) 587, 1060, 1480
AfiI CCNNNNNNNGG 1 cut(s) 999
AflIII ACRYGT 2 cut(s) 315, 703
AjnI CCWGG 2 cut(s) 160, 992
AjuI GAANNNNNNNTTGG 2 cut(s) 849, 881
Alw21I GWGCWC 2 cut(s) 336, 1726
Alw26I GTCTC 6 cut(s) 449, 502, 662, 921, 1265, 1345
AlwI GGATC 2 cut(s) 870, 1763
AoxI GGCC 4 cut(s) 424, 634, 788, 1442
ApeKI GCWGC 3 cut(s) 1016, 1487, 1664
ApoI RAATTY 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 1215
AspLEI GCGC 2 cut(s) 328, 808
AspS9I GGNCC 2 cut(s) 634, 789
AsuHPI GGTGA 1 cut(s) 1721
AsuII TTCGAA 2 cut(s) 154, 609
BalI TGGCCA 2 cut(s) 426, 1444
BanII GRGCYC 3 cut(s) 336, 397, 1726
BauI CACGAG 1 cut(s) 16
Bbv12I GWGCWC 2 cut(s) 336, 1726
BbvI GCAGC 3 cut(s) 1003, 1499, 1676
BccI CCATC 9 cut(s) 67, 245, 416, 931, 1095, 1174, 1453, 1616, 1706
BciT130I CCWGG 2 cut(s) 162, 994
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 6 cut(s) 449, 502, 662, 921, 1265, 1345
BfaI CTAG 6 cut(s) 92, 695, 759, 1022, 1073, 1154
BfmI CTRYAG 2 cut(s) 230, 1089
BfoI RGCGCY 1 cut(s) 809
BisI GCNGC 3 cut(s) 1017, 1488, 1665
BlsI GCNGC 3 cut(s) 1018, 1489, 1666
BmcAI AGTACT 1 cut(s) 1480
Bme1390I CCNGG 2 cut(s) 162, 994
BmgT120I GGNCC 2 cut(s) 634, 789
BmiI GGNNCC 3 cut(s) 166, 433, 473
BmrFI CCNGG 2 cut(s) 162, 994
BmrI ACTGGG 1 cut(s) 847
BmsI GCATC 5 cut(s) 46, 123, 784, 1524, 1643
BmuI ACTGGG 1 cut(s) 847
BoxI GACNNNNGTC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 1710
Bpu14I TTCGAA 2 cut(s) 154, 609
BpuEI CTTGAG 2 cut(s) 350, 644
BsaBI GATNNNNATC 1 cut(s) 798
BsaI GGTCTC 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 160, 427
BsaXI ACNNNNNCTCC 6 cut(s) 666, 696, 1110, 1140, 1262, 1292
Bsc4I CCNNNNNNNGG 1 cut(s) 999
Bse1I ACTGG 2 cut(s) 723, 842
Bse3DI GCAATG 3 cut(s) 40, 121, 851
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 2 cut(s) 162, 994
BseDI CCNNGG 2 cut(s) 160, 427
BseGI GGATG 5 cut(s) 256, 345, 568, 634, 1072
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 1 cut(s) 999
BseMI GCAATG 3 cut(s) 40, 121, 851
BseMII CTCAG 4 cut(s) 475, 682, 1356, 1548
BseNI ACTGG 2 cut(s) 723, 842
BseRI GAGGAG 3 cut(s) 118, 1367, 1518
BseXI GCAGC 3 cut(s) 1003, 1499, 1676
BshFI GGCC 4 cut(s) 426, 636, 790, 1444
BsiHKAI GWGCWC 2 cut(s) 336, 1726
BsiSI CCGG 1 cut(s) 1459
BslI CCNNNNNNNGG 1 cut(s) 999
BsmAI GTCTC 6 cut(s) 449, 502, 662, 921, 1265, 1345
BsmI GAATGC 4 cut(s) 111, 641, 747, 1415
BsnI GGCC 4 cut(s) 426, 636, 790, 1444
Bso31I GGTCTC 1 cut(s) 502
Bsp119I TTCGAA 2 cut(s) 154, 609
Bsp1286I GDGCHC 3 cut(s) 336, 397, 1726
Bsp143I GATC 4 cut(s) 217, 862, 1389, 1768
BspANI GGCC 4 cut(s) 426, 636, 790, 1444
BspCNI CTCAG 4 cut(s) 474, 681, 1355, 1549
BspLI GGNNCC 3 cut(s) 166, 433, 473
BspMAI CTGCAG 1 cut(s) 1093
BspPI GGATC 2 cut(s) 870, 1763
BspT104I TTCGAA 2 cut(s) 154, 609
BspTNI GGTCTC 1 cut(s) 502
BsrDI GCAATG 3 cut(s) 40, 121, 851
BsrI ACTGG 2 cut(s) 723, 842
BssECI CCNNGG 2 cut(s) 160, 427
BssMI GATC 4 cut(s) 217, 862, 1389, 1768
BssNAI GTATAC 2 cut(s) 244, 1699
BssSI CACGAG 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 427
Bst1107I GTATAC 2 cut(s) 244, 1699
Bst2BI CACGAG 1 cut(s) 16
Bst2UI CCWGG 2 cut(s) 162, 994
Bst4CI ACNGT 6 cut(s) 34, 354, 530, 765, 986, 1171
Bst6I CTCTTC 3 cut(s) 156, 264, 372
BstAPI GCANNNNNTGC 1 cut(s) 34
BstBI TTCGAA 2 cut(s) 154, 609
BstC8I GCNNGC 2 cut(s) 1005, 1401
BstDEI CTNAG 7 cut(s) 461, 476, 668, 1342, 1357, 1414, 1557
BstF5I GGATG 5 cut(s) 256, 345, 568, 634, 1072
BstH2I RGCGCY 1 cut(s) 809
BstHHI GCGC 2 cut(s) 328, 808
BstKTI GATC 4 cut(s) 220, 865, 1392, 1771
BstMAI GTCTC 6 cut(s) 449, 502, 662, 921, 1265, 1345
BstMBI GATC 4 cut(s) 217, 862, 1389, 1768
BstMWI GCNNNNNNNGC 3 cut(s) 34, 803, 1013
BstNI CCWGG 2 cut(s) 162, 994
BstNSI RCATGY 1 cut(s) 707
BstPAI GACNNNNGTC 1 cut(s) 441
BstSCI CCNGG 2 cut(s) 160, 992
BstSFI CTRYAG 2 cut(s) 230, 1089
BstV1I GCAGC 3 cut(s) 1003, 1499, 1676
BstX2I RGATCY 1 cut(s) 862
BstXI CCANNNNNNTGG 1 cut(s) 183
BstYI RGATCY 1 cut(s) 862
BstZ17I GTATAC 2 cut(s) 244, 1699
BsuRI GGCC 4 cut(s) 426, 636, 790, 1444
BtsCI GGATG 5 cut(s) 256, 345, 568, 634, 1072
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 5 cut(s) 453, 676, 716, 1176, 1764
Cac8I GCNNGC 2 cut(s) 1005, 1401
CfoI GCGC 2 cut(s) 328, 808
Cfr13I GGNCC 2 cut(s) 634, 789
Csp6I GTAC 3 cut(s) 586, 1059, 1479
CviQI GTAC 3 cut(s) 586, 1059, 1479
DdeI CTNAG 7 cut(s) 461, 476, 668, 1342, 1357, 1414, 1557
DpnI GATC 4 cut(s) 219, 864, 1391, 1770
DpnII GATC 4 cut(s) 217, 862, 1389, 1768
EaeI YGGCCR 2 cut(s) 424, 1442
Eam1104I CTCTTC 3 cut(s) 156, 264, 372
EarI CTCTTC 3 cut(s) 156, 264, 372
Ecl136II GAGCTC 2 cut(s) 334, 1724
Eco130I CCWWGG 1 cut(s) 427
Eco24I GRGCYC 3 cut(s) 336, 397, 1726
Eco31I GGTCTC 1 cut(s) 502
Eco32I GATATC 4 cut(s) 70, 368, 1108, 1335
Eco53kI GAGCTC 2 cut(s) 334, 1724
Eco57I CTGAAG 2 cut(s) 84, 1467
EcoICRI GAGCTC 2 cut(s) 334, 1724
EcoO109I RGGNCCY 1 cut(s) 634
EcoRII CCWGG 2 cut(s) 160, 992
EcoRV GATATC 4 cut(s) 70, 368, 1108, 1335
EcoT14I CCWWGG 1 cut(s) 427
EcoT22I ATGCAT 3 cut(s) 138, 1330, 1532
EcoT38I GRGCYC 3 cut(s) 336, 397, 1726
ErhI CCWWGG 1 cut(s) 427
FalI AAGNNNNNCTT 2 cut(s) 902, 934
FauNDI CATATG 2 cut(s) 182, 285
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 2 cut(s) 243, 1698
Fnu4HI GCNGC 3 cut(s) 1017, 1488, 1665
FokI GGATG 5 cut(s) 263, 332, 575, 641, 1079
FriOI GRGCYC 3 cut(s) 336, 397, 1726
Fsp4HI GCNGC 3 cut(s) 1017, 1488, 1665
FspBI CTAG 6 cut(s) 92, 695, 759, 1022, 1073, 1154
GlaI GCGC 2 cut(s) 327, 807
GluI GCNGC 3 cut(s) 1017, 1488, 1665
GsuI CTGGAG 1 cut(s) 1710
HaeII RGCGCY 1 cut(s) 809
HaeIII GGCC 4 cut(s) 426, 636, 790, 1444
HapII CCGG 1 cut(s) 1459
HhaI GCGC 2 cut(s) 328, 808
Hin6I GCGC 2 cut(s) 326, 806
HinP1I GCGC 2 cut(s) 326, 806
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HindIII AAGCTT 3 cut(s) 591, 1142, 1236
HinfI GANTC 8 cut(s) 442, 580, 709, 963, 1420, 1562, 1744, 1749
HpaII CCGG 1 cut(s) 1459
HphI GGTGA 1 cut(s) 1721
Hpy166II GTNNAC 4 cut(s) 244, 321, 522, 1699
Hpy188I TCNGA 3 cut(s) 926, 1558, 1683
Hpy188III TCNNGA 3 cut(s) 661, 869, 1727
Hpy8I GTNNAC 4 cut(s) 244, 321, 522, 1699
HpyAV CCTTC 1 cut(s) 605
HpyCH4III ACNGT 6 cut(s) 34, 354, 530, 765, 986, 1171
HpyCH4IV ACGT 2 cut(s) 317, 1277
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 803, 1013
HpyF3I CTNAG 7 cut(s) 461, 476, 668, 1342, 1357, 1414, 1557
HpySE526I ACGT 2 cut(s) 317, 1277
HspAI GCGC 2 cut(s) 326, 806
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 4 cut(s) 217, 862, 1389, 1768
LmnI GCTCC 6 cut(s) 131, 477, 674, 1625, 1721, 1729
Lsp1109I GCAGC 3 cut(s) 1003, 1499, 1676
LweI GCATC 5 cut(s) 46, 123, 784, 1524, 1643
MaeI CTAG 6 cut(s) 92, 695, 759, 1022, 1073, 1154
MaeII ACGT 2 cut(s) 317, 1277
MaeIII GTNAC 4 cut(s) 188, 682, 1024, 1228
MalI GATC 4 cut(s) 219, 864, 1391, 1770
MboI GATC 4 cut(s) 217, 862, 1389, 1768
MboII GAAGA 7 cut(s) 143, 223, 281, 389, 857, 1322, 1618
MfeI CAATTG 1 cut(s) 1032
MflI RGATCY 1 cut(s) 862
MhlI GDGCHC 3 cut(s) 336, 397, 1726
MlsI TGGCCA 2 cut(s) 426, 1444
MluCI AATT 6 cut(s) 74, 816, 1032, 1132, 1585, 1652
MluNI TGGCCA 2 cut(s) 426, 1444
MlyI GAGTC 3 cut(s) 451, 589, 718
MmeI TCCRAC 4 cut(s) 373, 606, 940, 1583
Mox20I TGGCCA 2 cut(s) 426, 1444
Mph1103I ATGCAT 3 cut(s) 138, 1330, 1532
MroXI GAANNNNTTC 1 cut(s) 1215
MscI TGGCCA 2 cut(s) 426, 1444
MseI TTAA 4 cut(s) 279, 834, 1196, 1777
MslI CAYNNNNRTG 3 cut(s) 987, 1408, 1757
Msp20I TGGCCA 2 cut(s) 426, 1444
MspI CCGG 1 cut(s) 1459
MspR9I CCNGG 2 cut(s) 162, 994
MunI CAATTG 1 cut(s) 1032
Mva1269I GAATGC 4 cut(s) 111, 641, 747, 1415
MvaI CCWGG 2 cut(s) 162, 994
MwoI GCNNNNNNNGC 3 cut(s) 34, 803, 1013
NdeI CATATG 2 cut(s) 182, 285
NdeII GATC 4 cut(s) 217, 862, 1389, 1768
NlaIV GGNNCC 3 cut(s) 166, 433, 473
NmuCI GTSAC 1 cut(s) 1228
NsiI ATGCAT 3 cut(s) 138, 1330, 1532
NspI RCATGY 1 cut(s) 707
NspV TTCGAA 2 cut(s) 154, 609
PciI ACATGT 1 cut(s) 703
PctI GAATGC 4 cut(s) 111, 641, 747, 1415
PdmI GAANNNNTTC 1 cut(s) 1215
PfeI GAWTC 5 cut(s) 963, 1420, 1562, 1744, 1749
PkrI GCNGC 3 cut(s) 1018, 1489, 1666
PleI GAGTC 3 cut(s) 450, 588, 717
PpsI GAGTC 3 cut(s) 450, 588, 717
PscI ACATGT 1 cut(s) 703
PshAI GACNNNNGTC 1 cut(s) 441
Psp124BI GAGCTC 2 cut(s) 336, 1726
Psp6I CCWGG 2 cut(s) 160, 992
PspGI CCWGG 2 cut(s) 160, 992
PspN4I GGNNCC 3 cut(s) 166, 433, 473
PspPI GGNCC 2 cut(s) 634, 789
PsrI GAACNNNNNNTAC 2 cut(s) 714, 746
PstI CTGCAG 1 cut(s) 1093
PsuI RGATCY 1 cut(s) 862
RsaI GTAC 3 cut(s) 587, 1060, 1480
RsaNI GTAC 3 cut(s) 586, 1059, 1479
RseI CAYNNNNRTG 3 cut(s) 987, 1408, 1757
SacI GAGCTC 2 cut(s) 336, 1726
SaqAI TTAA 4 cut(s) 279, 834, 1196, 1777
SatI GCNGC 3 cut(s) 1017, 1488, 1665
Sau3AI GATC 4 cut(s) 217, 862, 1389, 1768
Sau96I GGNCC 2 cut(s) 634, 789
ScaI AGTACT 1 cut(s) 1480
SchI GAGTC 3 cut(s) 451, 589, 718
ScrFI CCNGG 2 cut(s) 162, 994
SduI GDGCHC 3 cut(s) 336, 397, 1726
SfaNI GCATC 5 cut(s) 46, 123, 784, 1524, 1643
SfcI CTRYAG 2 cut(s) 230, 1089
SfuI TTCGAA 2 cut(s) 154, 609
SmiMI CAYNNNNRTG 3 cut(s) 987, 1408, 1757
SmlI CTYRAG 2 cut(s) 329, 659
SmoI CTYRAG 2 cut(s) 329, 659
Sse9I AATT 6 cut(s) 74, 816, 1032, 1132, 1585, 1652
SspI AATATT 1 cut(s) 408
SspMI CTAG 6 cut(s) 92, 695, 759, 1022, 1073, 1154
SstI GAGCTC 2 cut(s) 336, 1726
StyD4I CCNGG 2 cut(s) 160, 992
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 6 cut(s) 34, 354, 530, 765, 986, 1171
TaiI ACGT 2 cut(s) 320, 1280
TaqI TCGA 7 cut(s) 131, 154, 578, 609, 878, 1747, 1767
TasI AATT 6 cut(s) 74, 816, 1032, 1132, 1585, 1652
TatI WGTACW 1 cut(s) 1478
TfiI GAWTC 5 cut(s) 963, 1420, 1562, 1744, 1749
Tru1I TTAA 4 cut(s) 279, 834, 1196, 1777
Tru9I TTAA 4 cut(s) 279, 834, 1196, 1777
TscAI CASTG 5 cut(s) 460, 676, 723, 1176, 1764
TseFI GTSAC 1 cut(s) 1228
TseI GCWGC 3 cut(s) 1016, 1487, 1664
Tsp45I GTSAC 1 cut(s) 1228
TspDTI ATGAA 7 cut(s) 17, 253, 585, 910, 1083, 1154, 1352
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 5 cut(s) 460, 676, 723, 1176, 1764
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 707
XcmI CCANNNNNNNNNTGG 2 cut(s) 1000, 1709
XmiI GTMKAC 2 cut(s) 243, 1698
XmnI GAANNNNTTC 1 cut(s) 1215
XspI CTAG 6 cut(s) 92, 695, 759, 1022, 1073, 1154
ZrmI AGTACT 1 cut(s) 1480
Zsp2I ATGCAT 3 cut(s) 138, 1330, 1532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.