RLG00000021224

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000768
Physical Location & Seq
Reverse (-)
73094676 .. 73097943
3268 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021224

Sequence Viewer

Length: 1497 bp
ATGTCTACCCAATGCTTAGCGAGCAGCGGTTGCATTGTTGCTCAGACTTCACATATGGATGTTAAAAGACCGACATCAAATTACAAGCCAAGTATTTGGAGTTACGATTTTCTTCAGTCGTTACAAATTGATGATCGTAATCATGAAGAAGTATACGAAGATAATAGGTGGAAGTTGATGGAGGAGCATCTCAAAAATATGATTGATGCAGATATAACAGAAGCTCTTGATAGAGTTTTGAAGAACCTTGACCAAATAACAGACGAAGGTACTCCAAGTCTCCACCTCATTGCTCTCAGCTTCAGGCTCCTTAGACAGTATGGGTTTCAAGTCACCCAAGGTAATTCACATGTCAAAGGCATGCTAAGTCTGTACGAAGCTTCATTCCTTGGTATTGAAGGAGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAGCATGCACCTTAAAAACCTCAGCAGATTGCATATTACTCAAGTAAAAGGTATATTTGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGATTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCATATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTTGTGCAACAAACATACCGAAGAGATTTTAAAGACATTTCAAGGTGGTGGAAGGATACGGGATTAGCAAAGAAGTTGTCCTTCAGCAGAGACAGACTGATGGAGTTGTTCTTTTGGTCAGTTGGTATAGTGTCTGAACCTCAATTCAGCAATCTTAAGAAAGGGATAACTAAAGCCAGTGCTCTAATAACGACTATTGATGATGTCTATGATGCTTATGGTACTTTGGATGAACTAGAGCTATTCACATCTATTGTTGAAAGGTGGGATGTGAATGATATGGAAATTCTTTCAGACTACCAATTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAACGTCCTTCCTTACCTGACAAAAGCTTGGGCTGATATGTGCAAATCTTGGTTAACGGAGGTAGAGTGGCGTCACAACAAGTGTACACCAACATTTGAAGAATATCTTGCCAATGCATGGATATCAGTGTCTGGAGTGGTCATTCTAGTCCATACCTACTTTTTGTTGAATCAAAATATCTCAAATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCGGAACTAGAGAGAGGTGAAACTGCAACTTCAATATCTTGCATCAAACATAGTGGTGTAGTTTCTGATGAGGAATTTGCTCGCGGATATATAAGTGATTTGATTGAGAGTAGTTGGAAGAAGATGAACAAAGATGGGCTGATATTTAGTGCTAGTAGTGCTTCTTTTCCATTCACAAAGGAATTTGTAGCAGCAGCAACAAACCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

499

Amino Acids

57.41

Weight (kDa)

5.46

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 68 - 171 1.6e-20 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 228 - 469 3.1e-82 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 269 - 469 1.1e-54 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1125
AccI GTMKAC 2 cut(s) 5, 153
AccII CGCG 1 cut(s) 1368
AciI CCGC 3 cut(s) 27, 1286, 1368
AcoI YGGCCR 1 cut(s) 1238
AcsI RAATTY 4 cut(s) 608, 915, 1358, 1466
AcuI CTGAAG 3 cut(s) 98, 286, 697
AcyI GRCGYC 1 cut(s) 1078
AfaI GTAC 4 cut(s) 271, 374, 853, 1093
AfiI CCNNNNNNNGG 1 cut(s) 1125
AflII CTTAAG 1 cut(s) 785
AflIII ACRYGT 1 cut(s) 349
AluBI AGCT 8 cut(s) 224, 300, 380, 551, 619, 871, 940, 1034
AluI AGCT 8 cut(s) 224, 300, 380, 551, 619, 871, 940, 1034
Alw21I GWGCWC 1 cut(s) 814
Alw26I GTCTC 3 cut(s) 284, 714, 1248
AlwNI CAGNNNCTG 1 cut(s) 1139
AoxI GGCC 2 cut(s) 420, 1238
ApeKI GCWGC 3 cut(s) 24, 1475, 1478
ApoI RAATTY 4 cut(s) 608, 915, 1358, 1466
ArsI GACNNNNNNTTYG 2 cut(s) 692, 724
AspS9I GGNCC 1 cut(s) 421
AsuHPI GGTGA 4 cut(s) 325, 424, 1211, 1313
AsuII TTCGAA 1 cut(s) 1280
Bbv12I GWGCWC 1 cut(s) 814
BbvCI CCTCAGC 1 cut(s) 455
BbvI GCAGC 3 cut(s) 36, 1487, 1490
BccI CCATC 4 cut(s) 172, 549, 724, 1412
BceAI ACGGC 1 cut(s) 1225
BciVI GTATCC 1 cut(s) 679
BcoDI GTCTC 3 cut(s) 284, 714, 1248
BfaI CTAG 6 cut(s) 552, 620, 866, 1154, 1292, 1437
BfrI CTTAAG 1 cut(s) 785
BfuI GTATCC 1 cut(s) 679
BisI GCNGC 3 cut(s) 25, 1476, 1479
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 3 cut(s) 26, 1477, 1480
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 308
BmsI GCATC 5 cut(s) 196, 196, 507, 832, 1335
BplI GAGNNNNNCTC 2 cut(s) 393, 425
BpmI CTGGAG 1 cut(s) 1161
Bpu10I CCTNAGC 1 cut(s) 455
Bpu1102I GCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 1280
BpuEI CTTGAG 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 1078
BsaJI CCNNGG 2 cut(s) 337, 388
BsaXI ACNNNNNCTCC 4 cut(s) 996, 1026, 1058, 1088
Bsc4I CCNNNNNNNGG 1 cut(s) 1125
Bse1I ACTGG 1 cut(s) 807
Bse3DI GCAATG 2 cut(s) 288, 521
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 337, 388
BseGI GGATG 4 cut(s) 64, 421, 865, 904
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 1125
BseMI GCAATG 2 cut(s) 288, 521
BseMII CTCAG 3 cut(s) 56, 310, 469
BseNI ACTGG 1 cut(s) 807
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 3 cut(s) 36, 1487, 1490
Bsh1236I CGCG 1 cut(s) 1368
BshFI GGCC 2 cut(s) 422, 1240
BsiHKAI GWGCWC 1 cut(s) 814
BslI CCNNNNNNNGG 1 cut(s) 1125
BsmAI GTCTC 3 cut(s) 284, 714, 1248
BsmBI CGTCTC 1 cut(s) 1248
BsmI GAATGC 2 cut(s) 428, 540
BsnI GGCC 2 cut(s) 422, 1240
Bsp119I TTCGAA 1 cut(s) 1280
Bsp1286I GDGCHC 1 cut(s) 814
Bsp1407I TGTACA 1 cut(s) 1091
Bsp143I GATC 2 cut(s) 133, 1225
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 3 cut(s) 27, 1286, 1368
BspANI GGCC 2 cut(s) 422, 1240
BspCNI CTCAG 3 cut(s) 55, 309, 468
BspFNI CGCG 1 cut(s) 1368
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 1280
BspTI CTTAAG 1 cut(s) 785
BsrDI GCAATG 2 cut(s) 288, 521
BsrGI TGTACA 1 cut(s) 1091
BsrI ACTGG 1 cut(s) 807
BssECI CCNNGG 2 cut(s) 337, 388
BssMI GATC 2 cut(s) 133, 1225
BssNAI GTATAC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 1078
BssT1I CCWWGG 2 cut(s) 337, 388
Bst1107I GTATAC 1 cut(s) 154
Bst4CI ACNGT 3 cut(s) 318, 575, 967
Bst6I CTCTTC 1 cut(s) 646
BstACI GRCGYC 1 cut(s) 1078
BstAFI CTTAAG 1 cut(s) 785
BstAPI GCANNNNNTGC 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 1091
BstBI TTCGAA 1 cut(s) 1280
BstC8I GCNNGC 4 cut(s) 22, 362, 440, 1366
BstDEI CTNAG 7 cut(s) 16, 42, 296, 311, 365, 455, 1210
BstF5I GGATG 4 cut(s) 64, 421, 865, 904
BstFNI CGCG 1 cut(s) 1368
BstKTI GATC 2 cut(s) 136, 1228
BstMAI GTCTC 3 cut(s) 284, 714, 1248
BstMBI GATC 2 cut(s) 133, 1225
BstMWI GCNNNNNNNGC 3 cut(s) 21, 30, 1442
BstNSI RCATGY 3 cut(s) 353, 364, 442
BstUI CGCG 1 cut(s) 1368
BstV1I GCAGC 3 cut(s) 36, 1487, 1490
BstXI CCANNNNNNTGG 1 cut(s) 96
BstZ17I GTATAC 1 cut(s) 154
BsuI GTATCC 1 cut(s) 679
BsuRI GGCC 2 cut(s) 422, 1240
BtsCI GGATG 4 cut(s) 64, 421, 865, 904
BtsIMutI CAGTG 3 cut(s) 814, 963, 1140
Cac8I GCNNGC 4 cut(s) 22, 362, 440, 1366
CaiI CAGNNNCTG 1 cut(s) 1139
CciI TCATGA 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 421
CseI GACGC 1 cut(s) 1067
Csp6I GTAC 4 cut(s) 270, 373, 852, 1092
CspCI CAANNNNNGTGG 2 cut(s) 1318, 1353
CviAII CATG 7 cut(s) 143, 350, 361, 439, 506, 1125, 1223
CviQI GTAC 4 cut(s) 270, 373, 852, 1092
DdeI CTNAG 7 cut(s) 16, 42, 296, 311, 365, 455, 1210
DpnI GATC 2 cut(s) 135, 1227
DpnII GATC 2 cut(s) 133, 1225
DraI TTTAAA 1 cut(s) 661
EaeI YGGCCR 1 cut(s) 1238
Eam1104I CTCTTC 1 cut(s) 646
EarI CTCTTC 1 cut(s) 646
EciI GGCGGA 1 cut(s) 1301
Eco130I CCWWGG 2 cut(s) 337, 388
Eco32I GATATC 1 cut(s) 1131
Eco57I CTGAAG 3 cut(s) 98, 286, 697
EcoO109I RGGNCCY 1 cut(s) 421
EcoRV GATATC 1 cut(s) 1131
EcoT14I CCWWGG 2 cut(s) 337, 388
EcoT22I ATGCAT 2 cut(s) 511, 1126
ErhI CCWWGG 2 cut(s) 337, 388
Esp3I CGTCTC 1 cut(s) 1248
FaeI CATG 7 cut(s) 146, 353, 364, 442, 509, 1128, 1226
FalI AAGNNNNNCTT 4 cut(s) 695, 727, 1098, 1130
FatI CATG 7 cut(s) 142, 349, 360, 438, 505, 1124, 1222
FauNDI CATATG 2 cut(s) 54, 586
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 3 cut(s) 25, 1476, 1479
FokI GGATG 4 cut(s) 71, 428, 872, 911
Fsp4HI GCNGC 3 cut(s) 25, 1476, 1479
FspBI CTAG 6 cut(s) 552, 620, 866, 1154, 1292, 1437
GluI GCNGC 3 cut(s) 25, 1476, 1479
GsuI CTGGAG 1 cut(s) 1161
HaeIII GGCC 2 cut(s) 422, 1240
HgaI GACGC 1 cut(s) 1067
Hin1I GRCGYC 1 cut(s) 1078
Hin1II CATG 7 cut(s) 146, 353, 364, 442, 509, 1128, 1226
HincII GTYRAC 1 cut(s) 1062
HindII GTYRAC 1 cut(s) 1062
HindIII AAGCTT 2 cut(s) 378, 1032
HinfI GANTC 3 cut(s) 502, 1177, 1216
HpaI GTTAAC 1 cut(s) 1062
HphI GGTGA 4 cut(s) 325, 424, 1211, 1313
Hpy166II GTNNAC 6 cut(s) 6, 154, 1009, 1062, 1092, 1094
Hpy188I TCNGA 4 cut(s) 45, 766, 925, 1351
Hpy188III TCNNGA 3 cut(s) 143, 227, 1140
Hpy8I GTNNAC 6 cut(s) 6, 154, 1009, 1062, 1092, 1094
HpyAV CCTTC 7 cut(s) 260, 392, 676, 721, 988, 1025, 1276
HpyCH4III ACNGT 3 cut(s) 318, 575, 967
HpyCH4IV ACGT 1 cut(s) 1011
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 30, 1442
HpyF3I CTNAG 7 cut(s) 16, 42, 296, 311, 365, 455, 1210
HpySE526I ACGT 1 cut(s) 1011
Hsp92I GRCGYC 1 cut(s) 1078
Hsp92II CATG 7 cut(s) 146, 353, 364, 442, 509, 1128, 1226
KspAI GTTAAC 1 cut(s) 1062
Kzo9I GATC 2 cut(s) 133, 1225
LmnI GCTCC 3 cut(s) 184, 312, 997
LpnPI CCDG 6 cut(s) 289, 448, 581, 820, 1037, 1125
Lsp1109I GCAGC 3 cut(s) 36, 1487, 1490
LweI GCATC 5 cut(s) 196, 196, 507, 832, 1335
MaeI CTAG 6 cut(s) 552, 620, 866, 1154, 1292, 1437
MaeII ACGT 1 cut(s) 1011
MaeIII GTNAC 5 cut(s) 101, 120, 331, 1079, 1273
MalI GATC 2 cut(s) 135, 1227
MboI GATC 2 cut(s) 133, 1225
MboII GAAGA 8 cut(s) 104, 158, 170, 253, 663, 1118, 1414, 1417
MfeI CAATTG 1 cut(s) 932
MhlI GDGCHC 1 cut(s) 814
MluCI AATT 9 cut(s) 79, 126, 343, 608, 773, 915, 932, 1358, 1466
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 1 cut(s) 1379
Mph1103I ATGCAT 2 cut(s) 511, 1126
MseI TTAA 7 cut(s) 63, 447, 660, 786, 1061, 1203, 1495
MslI CAYNNNNRTG 4 cut(s) 57, 437, 1204, 1338
MspA1I CMGCKG 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 785
MunI CAATTG 1 cut(s) 932
Mva1269I GAATGC 2 cut(s) 428, 540
MvnI CGCG 1 cut(s) 1368
MwoI GCNNNNNNNGC 3 cut(s) 21, 30, 1442
NdeI CATATG 2 cut(s) 54, 586
NdeII GATC 2 cut(s) 133, 1225
NlaIII CATG 7 cut(s) 146, 353, 364, 442, 509, 1128, 1226
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 2 cut(s) 331, 1079
NsiI ATGCAT 2 cut(s) 511, 1126
NspI RCATGY 3 cut(s) 353, 364, 442
NspV TTCGAA 1 cut(s) 1280
PaeI GCATGC 2 cut(s) 364, 442
PagI TCATGA 1 cut(s) 142
PciI ACATGT 1 cut(s) 349
PctI GAATGC 2 cut(s) 428, 540
PfeI GAWTC 2 cut(s) 1177, 1216
PflMI CCANNNNNTGG 1 cut(s) 1125
PkrI GCNGC 3 cut(s) 26, 1477, 1480
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
PscI ACATGT 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 1139
RsaI GTAC 4 cut(s) 271, 374, 853, 1093
RsaNI GTAC 4 cut(s) 270, 373, 852, 1092
RseI CAYNNNNRTG 4 cut(s) 57, 437, 1204, 1338
SaqAI TTAA 7 cut(s) 63, 447, 660, 786, 1061, 1203, 1495
SatI GCNGC 3 cut(s) 25, 1476, 1479
Sau3AI GATC 2 cut(s) 133, 1225
Sau96I GGNCC 1 cut(s) 421
SchI GAGTC 1 cut(s) 511
SduI GDGCHC 1 cut(s) 814
SfaNI GCATC 5 cut(s) 196, 196, 507, 832, 1335
SfuI TTCGAA 1 cut(s) 1280
SmiMI CAYNNNNRTG 4 cut(s) 57, 437, 1204, 1338
SmlI CTYRAG 2 cut(s) 474, 785
SmoI CTYRAG 2 cut(s) 474, 785
SphI GCATGC 2 cut(s) 364, 442
Sse9I AATT 9 cut(s) 79, 126, 343, 608, 773, 915, 932, 1358, 1466
SsiI CCGC 3 cut(s) 27, 1286, 1368
SspMI CTAG 6 cut(s) 552, 620, 866, 1154, 1292, 1437
StyI CCWWGG 2 cut(s) 337, 388
TaaI ACNGT 3 cut(s) 318, 575, 967
TaiI ACGT 1 cut(s) 1014
TaqI TCGA 1 cut(s) 1280
TaqII GACCGA 1 cut(s) 85
TasI AATT 9 cut(s) 79, 126, 343, 608, 773, 915, 932, 1358, 1466
TatI WGTACW 1 cut(s) 1091
TfiI GAWTC 2 cut(s) 1177, 1216
Tru1I TTAA 7 cut(s) 63, 447, 660, 786, 1061, 1203, 1495
Tru9I TTAA 7 cut(s) 63, 447, 660, 786, 1061, 1203, 1495
TscAI CASTG 3 cut(s) 814, 970, 1140
TseFI GTSAC 2 cut(s) 331, 1079
TseI GCWGC 3 cut(s) 24, 1475, 1478
Tsp45I GTSAC 2 cut(s) 331, 1079
TspDTI ATGAA 7 cut(s) 159, 372, 876, 987, 999, 1209, 1424
TspGWI ACGGA 1 cut(s) 1079
TspRI CASTG 3 cut(s) 814, 970, 1140
Van91I CCANNNNNTGG 1 cut(s) 1125
Vha464I CTTAAG 1 cut(s) 785
XapI RAATTY 4 cut(s) 608, 915, 1358, 1466
XceI RCATGY 3 cut(s) 353, 364, 442
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 6 cut(s) 552, 620, 866, 1154, 1292, 1437
Zsp2I ATGCAT 2 cut(s) 511, 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.