Rh2CG533400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000768
Physical Location & Seq
Reverse (-)
70940367 .. 70943119
2753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG533400.1

Sequence Viewer

Length: 975 bp
ATGTACATAATATTGCAGACTAACTTAGGCTCCTTAATGACAATTCCATTAAATAGGTGGTGGAAGGATACGGGGTTAGCAAAGAAGTTGTCCTTCAGCAGAGACAGATTGATGGAGTTGTTCTTTTGGTCAGTTGGTATAGTGTCTGAACCTCAATTCAGCGATGCTAGGAAAGGGATAACTAAAGTCAGTGCTCTAATAACTACTATTGATGATGTCTATGATGTTTATGGTACTTTGGATGAATTAGAGCTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAACATTCTTCCTTACCTGACAAAAGCTTGGGCTGATATGTGCAAATCTTGGTTAACGGAGGCAGAGTGGCGTCACAACAAGTACACACCTACATTTGACGAATATCTTGCCAATGCATGGATATCAGTGTCCGGGGTGGTCATTCTAGTCCATACGTACTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTGTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCAGAACTAGAGAAAGGTGAAACTGCAACTTCAATATCCTGCATCAAACGTGGTGGTGTTGTTTCTGATGAGGAATCTGCTCACAAATATATTAGTAATTTGATTGAGAGTAGTTGGAAGAAGATGAACAAAGATGGACTAATATTTGGTGCCAATAGTGCTTCTTCTCCATTCACAAAAGAATTTGTAGCAGCAGCAACAAACCTTGCTCGAATTGCCCAATGTATCTACCAATATGGAGACGGGATTGGTGCCCCGGATAAAAGAGTAAAGAACCGGATCCTAGCAGTGATTGTACAACCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

324

Amino Acids

36.78

Weight (kDa)

5.51

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 22 - 263 1.9e-86 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 62 - 263 7.5e-57 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 815, 917
AccB7I CCANNNNNTGG 1 cut(s) 507
AclWI GGATC 2 cut(s) 940, 953
AcoI YGGCCR 1 cut(s) 620
AcsI RAATTY 2 cut(s) 297, 848
AcuI CTGAAG 2 cut(s) 79, 338
AcyI GRCGYC 1 cut(s) 460
AfaI GTAC 5 cut(s) 5, 235, 473, 548, 963
AfiI CCNNNNNNNGG 1 cut(s) 507
AgsI TTSAA 3 cut(s) 272, 376, 699
AluBI AGCT 4 cut(s) 253, 316, 322, 416
AluI AGCT 4 cut(s) 253, 316, 322, 416
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 2 cut(s) 96, 900
AlwI GGATC 2 cut(s) 940, 953
AoxI GGCC 1 cut(s) 620
ApeKI GCWGC 2 cut(s) 857, 860
ApoI RAATTY 2 cut(s) 297, 848
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AsuC2I CCSGG 2 cut(s) 523, 923
AsuHPI GGTGA 2 cut(s) 593, 695
AsuII TTCGAA 1 cut(s) 662
BaeGI GKGCMC 1 cut(s) 922
BamHI GGATCC 1 cut(s) 945
BanI GGYRCC 2 cut(s) 815, 917
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 869, 872
BccI CCATC 3 cut(s) 106, 270, 794
BceAI ACGGC 1 cut(s) 607
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BciVI GTATCC 1 cut(s) 61
BcnI CCSGG 2 cut(s) 523, 923
BcoDI GTCTC 2 cut(s) 96, 900
BfaI CTAG 4 cut(s) 168, 536, 674, 950
BfuI GTATCC 1 cut(s) 61
BisI GCNGC 2 cut(s) 858, 861
BlsI GCNGC 2 cut(s) 859, 862
Bme1390I CCNGG 2 cut(s) 523, 923
BmiI GGNNCC 4 cut(s) 31, 817, 919, 947
BmrFI CCNGG 2 cut(s) 523, 923
BmsI GCATC 2 cut(s) 154, 717
Bpu14I TTCGAA 1 cut(s) 662
BpuMI CCSGG 2 cut(s) 523, 923
BsaAI YACGTR 1 cut(s) 546
BsaHI GRCGYC 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 522, 921
BsaWI WCCGGW 1 cut(s) 942
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 440, 470
Bsc4I CCNNNNNNNGG 1 cut(s) 507
BseDI CCNNGG 2 cut(s) 522, 921
BseGI GGATG 2 cut(s) 247, 286
BseLI CCNNNNNNNGG 1 cut(s) 507
BseMII CTCAG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 2 cut(s) 869, 872
BshFI GGCC 1 cut(s) 622
BshNI GGYRCC 2 cut(s) 815, 917
BsiHKAI GWGCWC 1 cut(s) 196
BsiSI CCGG 3 cut(s) 522, 923, 943
BslI CCNNNNNNNGG 1 cut(s) 507
BsmAI GTCTC 2 cut(s) 96, 900
BsmBI CGTCTC 1 cut(s) 900
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 1 cut(s) 622
Bsp119I TTCGAA 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 196, 922
Bsp1407I TGTACA 2 cut(s) 3, 961
Bsp143I GATC 2 cut(s) 607, 945
BspANI GGCC 1 cut(s) 622
BspCNI CTCAG 1 cut(s) 584
BspLI GGNNCC 4 cut(s) 31, 817, 919, 947
BspPI GGATC 2 cut(s) 940, 953
BspT104I TTCGAA 1 cut(s) 662
BspT107I GGYRCC 2 cut(s) 815, 917
BsrGI TGTACA 2 cut(s) 3, 961
BssECI CCNNGG 2 cut(s) 522, 921
BssMI GATC 2 cut(s) 607, 945
BssNI GRCGYC 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 349
BstACI GRCGYC 1 cut(s) 460
BstAUI TGTACA 2 cut(s) 3, 961
BstBAI YACGTR 1 cut(s) 546
BstBI TTCGAA 1 cut(s) 662
BstDEI CTNAG 3 cut(s) 25, 571, 592
BstF5I GGATG 2 cut(s) 247, 286
BstKTI GATC 2 cut(s) 610, 948
BstMAI GTCTC 2 cut(s) 96, 900
BstMBI GATC 2 cut(s) 607, 945
BstMWI GCNNNNNNNGC 2 cut(s) 824, 881
BstSCI CCNGG 2 cut(s) 521, 921
BstSLI GKGCMC 1 cut(s) 922
BstSNI TACGTA 1 cut(s) 546
BstV1I GCAGC 2 cut(s) 869, 872
BstX2I RGATCY 1 cut(s) 945
BstYI RGATCY 1 cut(s) 945
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 622
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 247, 286
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 4 cut(s) 196, 345, 522, 960
CseI GACGC 1 cut(s) 449
Csp6I GTAC 5 cut(s) 4, 234, 472, 547, 962
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 2 cut(s) 507, 605
CviJI RGCY 8 cut(s) 30, 253, 316, 322, 416, 422, 622, 640
CviKI_1 RGCY 8 cut(s) 30, 253, 316, 322, 416, 422, 622, 640
CviQI GTAC 5 cut(s) 4, 234, 472, 547, 962
DdeI CTNAG 3 cut(s) 25, 571, 592
DpnI GATC 2 cut(s) 609, 947
DpnII GATC 2 cut(s) 607, 945
EaeI YGGCCR 1 cut(s) 620
Eco105I TACGTA 1 cut(s) 546
Eco32I GATATC 1 cut(s) 513
Eco57I CTGAAG 2 cut(s) 79, 338
EcoRV GATATC 1 cut(s) 513
EcoT22I ATGCAT 1 cut(s) 508
Esp3I CGTCTC 1 cut(s) 900
FaeI CATG 2 cut(s) 510, 608
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FatI CATG 2 cut(s) 506, 604
Fnu4HI GCNGC 2 cut(s) 858, 861
FokI GGATG 2 cut(s) 254, 293
Fsp4HI GCNGC 2 cut(s) 858, 861
FspBI CTAG 4 cut(s) 168, 536, 674, 950
GluI GCNGC 2 cut(s) 858, 861
HaeIII GGCC 1 cut(s) 622
HapII CCGG 3 cut(s) 522, 923, 943
HgaI GACGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 460
Hin1II CATG 2 cut(s) 510, 608
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 3 cut(s) 559, 598, 740
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 3 cut(s) 522, 923, 943
HphI GGTGA 2 cut(s) 593, 695
Hpy166II GTNNAC 3 cut(s) 391, 444, 474
Hpy188I TCNGA 4 cut(s) 148, 307, 574, 733
Hpy8I GTNNAC 3 cut(s) 391, 444, 474
HpyAV CCTTC 4 cut(s) 58, 103, 370, 658
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 545, 715
HpyCH4V TGCA 5 cut(s) 16, 432, 506, 692, 708
HpyF10VI GCNNNNNNNGC 2 cut(s) 824, 881
HpyF3I CTNAG 3 cut(s) 25, 571, 592
HpySE526I ACGT 2 cut(s) 545, 715
Hsp92I GRCGYC 1 cut(s) 460
Hsp92II CATG 2 cut(s) 510, 608
KspAI GTTAAC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 607, 945
LmnI GCTCC 2 cut(s) 35, 379
LpnPI CCDG 6 cut(s) 326, 419, 535, 718, 936, 956
Lsp1109I GCAGC 2 cut(s) 869, 872
LweI GCATC 2 cut(s) 154, 717
MaeI CTAG 4 cut(s) 168, 536, 674, 950
MaeII ACGT 2 cut(s) 545, 715
MaeIII GTNAC 2 cut(s) 461, 655
MalI GATC 2 cut(s) 609, 947
MboI GATC 2 cut(s) 607, 945
MboII GAAGA 4 cut(s) 389, 796, 799, 822
MflI RGATCY 1 cut(s) 945
MhlI GDGCHC 2 cut(s) 196, 922
MluCI AATT 7 cut(s) 42, 155, 245, 297, 763, 848, 879
MmeI TCCRAC 1 cut(s) 761
MnlI CCTC 3 cut(s) 162, 442, 730
Mph1103I ATGCAT 1 cut(s) 508
MseI TTAA 4 cut(s) 35, 50, 443, 585
MslI CAYNNNNRTG 1 cut(s) 586
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 3 cut(s) 522, 923, 943
MspR9I CCNGG 2 cut(s) 523, 923
Mva1269I GAATGC 1 cut(s) 292
MwoI GCNNNNNNNGC 2 cut(s) 824, 881
NciI CCSGG 2 cut(s) 523, 923
NdeII GATC 2 cut(s) 607, 945
NlaIII CATG 2 cut(s) 510, 608
NlaIV GGNNCC 4 cut(s) 31, 817, 919, 947
NmuCI GTSAC 1 cut(s) 461
NsiI ATGCAT 1 cut(s) 508
NspV TTCGAA 1 cut(s) 662
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 3 cut(s) 559, 598, 740
PflMI CCANNNNNTGG 1 cut(s) 507
PkrI GCNGC 2 cut(s) 859, 862
Ppu21I YACGTR 1 cut(s) 546
PspN4I GGNNCC 4 cut(s) 31, 817, 919, 947
PsuI RGATCY 1 cut(s) 945
PvuII CAGCTG 1 cut(s) 316
RsaI GTAC 5 cut(s) 5, 235, 473, 548, 963
RsaNI GTAC 5 cut(s) 4, 234, 472, 547, 962
RseI CAYNNNNRTG 1 cut(s) 586
SaqAI TTAA 4 cut(s) 35, 50, 443, 585
SatI GCNGC 2 cut(s) 858, 861
Sau3AI GATC 2 cut(s) 607, 945
ScrFI CCNGG 2 cut(s) 523, 923
SduI GDGCHC 2 cut(s) 196, 922
SfaNI GCATC 2 cut(s) 154, 717
SfuI TTCGAA 1 cut(s) 662
SmiMI CAYNNNNRTG 1 cut(s) 586
SnaBI TACGTA 1 cut(s) 546
Sse9I AATT 7 cut(s) 42, 155, 245, 297, 763, 848, 879
SspI AATATT 2 cut(s) 12, 810
SspMI CTAG 4 cut(s) 168, 536, 674, 950
StyD4I CCNGG 2 cut(s) 521, 921
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 548, 718
TaqI TCGA 2 cut(s) 662, 877
TasI AATT 7 cut(s) 42, 155, 245, 297, 763, 848, 879
TatI WGTACW 3 cut(s) 3, 471, 961
TfiI GAWTC 3 cut(s) 559, 598, 740
Tru1I TTAA 4 cut(s) 35, 50, 443, 585
Tru9I TTAA 4 cut(s) 35, 50, 443, 585
TscAI CASTG 4 cut(s) 196, 352, 522, 960
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 2 cut(s) 857, 860
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 5 cut(s) 258, 369, 381, 591, 806
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 4 cut(s) 196, 352, 522, 960
Van91I CCANNNNNTGG 1 cut(s) 507
XapI RAATTY 2 cut(s) 297, 848
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
XspI CTAG 4 cut(s) 168, 536, 674, 950
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.