Rmu_co8462617.1_g000001

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8462617.1
OG0000768
Physical Location & Seq
Forward (+)
419 .. 1717
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8462617.1_g000001.1.cds

Sequence Viewer

Length: 855 bp
atgacaattccattaaataggtggtggaaggatatagggttagctaagaagttgtccttcagcagagacagactgatggagttgttcttttggtcagttggtatagtgtctgaacctcaattcagcaatcttagaaaagaaataactaaagtcagtgctctaataacgactattgatgatgtctatgatgtttatggtactttggatgaactggagctattcacatcaattgttgaaagtggccatatgttgatgatgacctgtgctctcacatcttgcttgcatattgattctcagtgggctgatatgtgcaaatcttggttaactgaggcagagtggcgtcacaacaagtacacacctacatttgaagaatatcttgccaatgcatggatatcagtgtccggggtggtcattctagtccatacctactttctactgaaccaaaatatctcaaatgaagcacttaaatgcttagagaatcaccatgatctcttgcgttggccgtctcttatttttcggctctcaaatgatttggttacttcaaaggcagaattagagagtggtgaaactgcaacttcaatatcctacatcatatgtggtggtgttgtttctgatgaggaatctgctttcaaacatattaggaatttgattaacaatagttggaagaagatgaataaagatggactactatttggtgttagcactgcttcttctccattcacaaaggaatttgtagcagcagcaacaaaccttgctcggattgcccaatgcatttaccaatatggagacgggattggtgccccaaacaaaagagtaaagaatcggatcctagcagtgattgtacaacccatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

284

Amino Acids

32.2

Weight (kDa)

5.99

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 797
AccB7I CCANNNNNTGG 1 cut(s) 387
AclWI GGATC 2 cut(s) 820, 833
AcoI YGGCCR 2 cut(s) 241, 500
AcsI RAATTY 2 cut(s) 643, 728
AcuI CTGAAG 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 340
AfaI GTAC 3 cut(s) 199, 353, 843
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 5 cut(s) 236, 368, 543, 579, 631
AluBI AGCT 2 cut(s) 44, 217
AluI AGCT 2 cut(s) 44, 217
Alw21I GWGCWC 2 cut(s) 160, 268
Alw26I GTCTC 3 cut(s) 60, 510, 780
AlwI GGATC 2 cut(s) 820, 833
AoxI GGCC 2 cut(s) 241, 500
ApeKI GCWGC 2 cut(s) 737, 740
ApoI RAATTY 2 cut(s) 643, 728
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 473, 575
BaeGI GKGCMC 1 cut(s) 802
BalI TGGCCA 1 cut(s) 243
BamHI GGATCC 1 cut(s) 825
BanI GGYRCC 1 cut(s) 797
Bbv12I GWGCWC 2 cut(s) 160, 268
BbvI GCAGC 2 cut(s) 749, 752
BccI CCATC 2 cut(s) 70, 674
BceAI ACGGC 1 cut(s) 487
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 3 cut(s) 60, 510, 780
BfaI CTAG 2 cut(s) 416, 830
BisI GCNGC 2 cut(s) 738, 741
BlsI GCNGC 2 cut(s) 739, 742
Bme1390I CCNGG 1 cut(s) 403
BmiI GGNNCC 2 cut(s) 799, 827
BmrFI CCNGG 1 cut(s) 403
BpmI CTGGAG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 403
BsaHI GRCGYC 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 402
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 308, 318
BseNI ACTGG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 802
BseXI GCAGC 2 cut(s) 749, 752
BshFI GGCC 2 cut(s) 243, 502
BshNI GGYRCC 1 cut(s) 797
BsiHKAI GWGCWC 2 cut(s) 160, 268
BsiSI CCGG 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 3 cut(s) 60, 510, 780
BsmBI CGTCTC 2 cut(s) 510, 780
BsnI GGCC 2 cut(s) 243, 502
Bsp1286I GDGCHC 3 cut(s) 160, 268, 802
Bsp1407I TGTACA 1 cut(s) 841
Bsp143I GATC 2 cut(s) 487, 825
BspANI GGCC 2 cut(s) 243, 502
BspCNI CTCAG 2 cut(s) 307, 319
BspLI GGNNCC 2 cut(s) 799, 827
BspPI GGATC 2 cut(s) 820, 833
BspT107I GGYRCC 1 cut(s) 797
BsrGI TGTACA 1 cut(s) 841
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 2 cut(s) 487, 825
BssNI GRCGYC 1 cut(s) 340
BstACI GRCGYC 1 cut(s) 340
BstAUI TGTACA 1 cut(s) 841
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 5 cut(s) 45, 131, 294, 327, 472
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 2 cut(s) 490, 828
BstMAI GTCTC 3 cut(s) 60, 510, 780
BstMBI GATC 2 cut(s) 487, 825
BstMWI GCNNNNNNNGC 1 cut(s) 761
BstSCI CCNGG 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 802
BstV1I GCAGC 2 cut(s) 749, 752
BstX2I RGATCY 1 cut(s) 825
BstYI RGATCY 1 cut(s) 825
BsuRI GGCC 2 cut(s) 243, 502
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 2 cut(s) 702, 840
BtsIMutI CAGTG 5 cut(s) 160, 302, 402, 702, 840
Cac8I GCNNGC 1 cut(s) 281
CseI GACGC 1 cut(s) 329
Csp6I GTAC 3 cut(s) 198, 352, 842
CviAII CATG 2 cut(s) 387, 485
CviJI RGCY 6 cut(s) 44, 217, 243, 302, 502, 520
CviKI_1 RGCY 6 cut(s) 44, 217, 243, 302, 502, 520
CviQI GTAC 3 cut(s) 198, 352, 842
DdeI CTNAG 5 cut(s) 45, 131, 294, 327, 472
DpnI GATC 2 cut(s) 489, 827
DpnII GATC 2 cut(s) 487, 825
EaeI YGGCCR 2 cut(s) 241, 500
Eco32I GATATC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 43
EcoRV GATATC 1 cut(s) 393
EcoT22I ATGCAT 2 cut(s) 388, 773
Esp3I CGTCTC 2 cut(s) 510, 780
FaeI CATG 2 cut(s) 390, 488
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 360, 392
FatI CATG 2 cut(s) 386, 484
FauNDI CATATG 2 cut(s) 246, 593
Fnu4HI GCNGC 2 cut(s) 738, 741
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 738, 741
FspBI CTAG 2 cut(s) 416, 830
GluI GCNGC 2 cut(s) 738, 741
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 2 cut(s) 243, 502
HapII CCGG 1 cut(s) 402
HgaI GACGC 1 cut(s) 329
Hin1I GRCGYC 1 cut(s) 340
Hin1II CATG 2 cut(s) 390, 488
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 4 cut(s) 290, 478, 620, 820
HpaI GTTAAC 1 cut(s) 324
HpaII CCGG 1 cut(s) 402
HphI GGTGA 2 cut(s) 473, 575
Hpy166II GTNNAC 2 cut(s) 324, 354
Hpy188I TCNGA 4 cut(s) 112, 613, 759, 825
Hpy8I GTNNAC 2 cut(s) 324, 354
HpyAV CCTTC 2 cut(s) 22, 67
HpyCH4V TGCA 5 cut(s) 283, 312, 386, 572, 771
HpyF10VI GCNNNNNNNGC 1 cut(s) 761
HpyF3I CTNAG 5 cut(s) 45, 131, 294, 327, 472
Hsp92I GRCGYC 1 cut(s) 340
Hsp92II CATG 2 cut(s) 390, 488
KspAI GTTAAC 1 cut(s) 324
Kzo9I GATC 2 cut(s) 487, 825
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 3 cut(s) 197, 274, 415
Lsp1109I GCAGC 2 cut(s) 749, 752
MaeI CTAG 2 cut(s) 416, 830
MaeIII GTNAC 2 cut(s) 341, 535
MalI GATC 2 cut(s) 489, 827
MboI GATC 2 cut(s) 487, 825
MboII GAAGA 4 cut(s) 380, 676, 679, 702
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 1 cut(s) 825
MhlI GDGCHC 3 cut(s) 160, 268, 802
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 6 cut(s) 6, 119, 228, 551, 643, 728
MluNI TGGCCA 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 641
MnlI CCTC 3 cut(s) 126, 322, 610
Mox20I TGGCCA 1 cut(s) 243
Mph1103I ATGCAT 2 cut(s) 388, 773
MscI TGGCCA 1 cut(s) 243
MseI TTAA 5 cut(s) 14, 323, 465, 651, 853
MslI CAYNNNNRTG 1 cut(s) 466
Msp20I TGGCCA 1 cut(s) 243
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 1 cut(s) 403
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 761
NciI CCSGG 1 cut(s) 403
NdeI CATATG 2 cut(s) 246, 593
NdeII GATC 2 cut(s) 487, 825
NlaIII CATG 2 cut(s) 390, 488
NlaIV GGNNCC 2 cut(s) 799, 827
NmuCI GTSAC 1 cut(s) 341
NsiI ATGCAT 2 cut(s) 388, 773
PfeI GAWTC 4 cut(s) 290, 478, 620, 820
PflMI CCANNNNNTGG 1 cut(s) 387
PkrI GCNGC 2 cut(s) 739, 742
PspN4I GGNNCC 2 cut(s) 799, 827
PsuI RGATCY 1 cut(s) 825
RsaI GTAC 3 cut(s) 199, 353, 843
RsaNI GTAC 3 cut(s) 198, 352, 842
RseI CAYNNNNRTG 1 cut(s) 466
SaqAI TTAA 5 cut(s) 14, 323, 465, 651, 853
SatI GCNGC 2 cut(s) 738, 741
Sau3AI GATC 2 cut(s) 487, 825
ScrFI CCNGG 1 cut(s) 403
SduI GDGCHC 3 cut(s) 160, 268, 802
SetI ASST 8 cut(s) 23, 46, 118, 219, 263, 361, 428, 753
SmiMI CAYNNNNRTG 1 cut(s) 466
Sse9I AATT 6 cut(s) 6, 119, 228, 551, 643, 728
SspMI CTAG 2 cut(s) 416, 830
StyD4I CCNGG 1 cut(s) 401
TasI AATT 6 cut(s) 6, 119, 228, 551, 643, 728
TatI WGTACW 2 cut(s) 351, 841
TfiI GAWTC 4 cut(s) 290, 478, 620, 820
Tru1I TTAA 5 cut(s) 14, 323, 465, 651, 853
Tru9I TTAA 5 cut(s) 14, 323, 465, 651, 853
TscAI CASTG 5 cut(s) 160, 302, 402, 709, 840
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 2 cut(s) 737, 740
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 222, 471, 686
TspRI CASTG 5 cut(s) 160, 302, 402, 709, 840
Van91I CCANNNNNTGG 1 cut(s) 387
XapI RAATTY 2 cut(s) 643, 728
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XspI CTAG 2 cut(s) 416, 830
Zsp2I ATGCAT 2 cut(s) 388, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.