Rw2G045460

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000768
Physical Location & Seq
Reverse (-)
72385056 .. 72389847
4792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045460.1

Sequence Viewer

Length: 1683 bp
ATGTCTACCCAATGCTTAGCGAGCAGTGGTCACACTGCTGCTCAAACTTCACATCTGGATGTTAAAAGACTAACAGCAAATTACAAGCCAAGTATTTGGAGTTGCGATTTTCTTCAGTCGTTACAAATTGATGATCGTAATCATGAAGAAGTCTACGGAGATAATAGGTGGAAGTTGATGGAGGAGGATCTGAAAAATATGATTGATGCAGAGTCACTAGAGACTACACTTGAATTTATTGATGACATCCATCGATTAGGTTTGGGACACCGATTTGAGACCAGTATAAAAGAAACCCTTGATAGAGTCTTGAAGAATCTTGACCAAATAACAGACGAAGATACTCCAAATCTTCACCTCACTGCTCTAAGCTTTAGGCTCCTCAGACATCATGGGTTTCAAGTCTCCCAAGGTAACTTTAAGGATTACCATTGCAAAGATGTCAAAGGCATGATAAGTCTGTATGAAGCTTCATTCCTCGGTAATGAAGGAGAAACCCTCTTGGATGAGGCTCTTGCATTCACCATCATGCACCTAAAGAACCTCAGTAGATTGCATGTTACTCAAGACAAAGGAGTATTAGAGCAAGTTAATCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGATTAGAAGCTAGATGGTATATTGAGGTATACAGTAAAAAGGCATATGCAAATCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATTTTAAAGATATTTCAAGGTGGTGGAAGGATACGGGGTTAGCAAAGAAGTTGTCCTTCAGCAGAGACAGATTGATGGAGTTGTTCTTTTGGTCAGTTGGTATAGTGTCTGAACCTCAATTCAGCGATGCTAGGAAAGGGATAACTAAAGTCAGTGCTCTAATAACTACTATTGATGATGTCTATGATGTTTATGGTACTTTGGATGAATTAGAGCTATTCACATCTGTTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAACATTCTTCCTTACCTGACAAAAGCTTGGGCTGATATGTGCAAATCTTGGTTAACGGAGGCAGAGTGGCGTCACAACAAGTACACACCTACATTTGACGAATATCTTGCCAATGCATGGATATCAGTGTCCGGGGTGGTCATTGTAGTCCATACGTACTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGCCGTCTGTTATTTTTCGGCTCTCAAATGATTTGGTTACTTCGAAGGCAGAACTAGAGAAAGGTGAAACTGCAACTTCAATATCCTGCATCAAACGTGGTGGTGTTGTTTCTGATGAGGAATCTGCTCACAAATATATTAGTAATTTGATTGAGAGTAGTTGGAAGAAGATGAACAAAGATGGACTAATATTTGGTGCCAATAGTGCTTCTTCTCCATTCACAAAAGAATTTGTAGCAGCAGCAACAAACCTTGCTCGAATTGCCCAATGTATCTACCAATATGGAGACGGGATTGGTGCCCCGGATAAAAGAGTAAAGAACCGGATCCTAGCAGTGATTGTACAACCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

560

Amino Acids

64.31

Weight (kDa)

5.6

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 201 1.7e-36 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 258 - 499 7.3e-86 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 298 - 499 4.4e-56 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1523, 1625
AccB7I CCANNNNNTGG 1 cut(s) 1215
AccI GTMKAC 3 cut(s) 5, 153, 660
AclWI GGATC 3 cut(s) 195, 1648, 1661
AcoI YGGCCR 1 cut(s) 1328
AcsI RAATTY 4 cut(s) 233, 698, 1005, 1556
AcuI CTGAAG 3 cut(s) 98, 787, 1046
AcyI GRCGYC 1 cut(s) 1168
AfaI GTAC 4 cut(s) 943, 1181, 1256, 1671
AfiI CCNNNNNNNGG 1 cut(s) 1215
AgsI TTSAA 8 cut(s) 233, 313, 401, 698, 762, 980, 1084, 1407
AluBI AGCT 8 cut(s) 372, 470, 641, 709, 961, 1024, 1030, 1124
AluI AGCT 8 cut(s) 372, 470, 641, 709, 961, 1024, 1030, 1124
Alw21I GWGCWC 1 cut(s) 904
Alw26I GTCTC 5 cut(s) 215, 272, 409, 804, 1608
AlwI GGATC 3 cut(s) 195, 1648, 1661
AoxI GGCC 1 cut(s) 1328
ApeKI GCWGC 3 cut(s) 38, 1565, 1568
ApoI RAATTY 4 cut(s) 233, 698, 1005, 1556
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
AsuC2I CCSGG 2 cut(s) 1231, 1631
AsuHPI GGTGA 4 cut(s) 347, 514, 1301, 1403
AsuII TTCGAA 1 cut(s) 1370
BaeGI GKGCMC 1 cut(s) 1630
BamHI GGATCC 1 cut(s) 1653
BanI GGYRCC 2 cut(s) 1523, 1625
Bbv12I GWGCWC 1 cut(s) 904
BbvI GCAGC 3 cut(s) 25, 1577, 1580
BccI CCATC 7 cut(s) 172, 258, 533, 639, 814, 978, 1502
BceAI ACGGC 1 cut(s) 1315
BcgI CGANNNNNNTGC 2 cut(s) 1187, 1221
BciVI GTATCC 1 cut(s) 769
BcnI CCSGG 2 cut(s) 1231, 1631
BcoDI GTCTC 5 cut(s) 215, 272, 409, 804, 1608
BfaI CTAG 6 cut(s) 218, 642, 710, 876, 1382, 1658
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 3 cut(s) 39, 1566, 1569
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 3 cut(s) 40, 1567, 1570
Bme1390I CCNGG 2 cut(s) 1231, 1631
BmiI GGNNCC 4 cut(s) 380, 1525, 1627, 1655
BmrFI CCNGG 2 cut(s) 1231, 1631
BmsI GCATC 4 cut(s) 196, 597, 862, 1425
BplI GAGNNNNNCTC 2 cut(s) 483, 515
Bpu1102I GCTNAGC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 1370
BpuEI CTTGAG 1 cut(s) 549
BpuMI CCSGG 2 cut(s) 1231, 1631
Bsa29I ATCGAT 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 1254
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 1168
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 4 cut(s) 409, 478, 1230, 1629
BsaWI WCCGGW 1 cut(s) 1650
BsaXI ACNNNNNCTCC 2 cut(s) 1148, 1178
Bsc4I CCNNNNNNNGG 1 cut(s) 1215
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 2 cut(s) 430, 611
Bse8I GATNNNNATC 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 253
BseDI CCNNGG 4 cut(s) 409, 478, 1230, 1629
BseGI GGATG 5 cut(s) 64, 246, 511, 955, 994
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 1215
BseMI GCAATG 2 cut(s) 430, 611
BseMII CTCAG 3 cut(s) 397, 559, 1293
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 2 cut(s) 197, 371
BseSI GKGCMC 1 cut(s) 1630
BseXI GCAGC 3 cut(s) 25, 1577, 1580
BshFI GGCC 1 cut(s) 1330
BshNI GGYRCC 2 cut(s) 1523, 1625
BshVI ATCGAT 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 904
BsiSI CCGG 3 cut(s) 1230, 1631, 1651
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 1215
BsmAI GTCTC 5 cut(s) 215, 272, 409, 804, 1608
BsmBI CGTCTC 1 cut(s) 1608
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 3 cut(s) 518, 630, 1000
BsnI GGCC 1 cut(s) 1330
Bso31I GGTCTC 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 1370
Bsp1286I GDGCHC 2 cut(s) 904, 1630
Bsp1407I TGTACA 1 cut(s) 1669
Bsp143I GATC 4 cut(s) 133, 187, 1315, 1653
Bsp1720I GCTNAGC 1 cut(s) 16
BspANI GGCC 1 cut(s) 1330
BspCNI CTCAG 3 cut(s) 396, 558, 1292
BspDI ATCGAT 1 cut(s) 253
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 4 cut(s) 380, 1525, 1627, 1655
BspPI GGATC 3 cut(s) 195, 1648, 1661
BspT104I TTCGAA 1 cut(s) 1370
BspT107I GGYRCC 2 cut(s) 1523, 1625
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 430, 611
BsrGI TGTACA 1 cut(s) 1669
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 4 cut(s) 409, 478, 1230, 1629
BssMI GATC 4 cut(s) 133, 187, 1315, 1653
BssNAI GTATAC 1 cut(s) 661
BssNI GRCGYC 1 cut(s) 1168
BssT1I CCWWGG 1 cut(s) 409
Bst1107I GTATAC 1 cut(s) 661
Bst4CI ACNGT 2 cut(s) 665, 1057
BstACI GRCGYC 1 cut(s) 1168
BstAUI TGTACA 1 cut(s) 1669
BstBAI YACGTR 1 cut(s) 1254
BstBI TTCGAA 1 cut(s) 1370
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 6 cut(s) 16, 368, 383, 545, 1279, 1300
BstF5I GGATG 5 cut(s) 64, 246, 511, 955, 994
BstKTI GATC 4 cut(s) 136, 190, 1318, 1656
BstMAI GTCTC 5 cut(s) 215, 272, 409, 804, 1608
BstMBI GATC 4 cut(s) 133, 187, 1315, 1653
BstMWI GCNNNNNNNGC 3 cut(s) 21, 1532, 1589
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 2 cut(s) 1229, 1629
BstSLI GKGCMC 1 cut(s) 1630
BstSNI TACGTA 1 cut(s) 1254
BstV1I GCAGC 3 cut(s) 25, 1577, 1580
BstX2I RGATCY 2 cut(s) 187, 1653
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 2 cut(s) 187, 1653
BstZ17I GTATAC 1 cut(s) 661
Bsu15I ATCGAT 1 cut(s) 253
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 1 cut(s) 1330
BsuTUI ATCGAT 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 885
BtsCI GGATG 5 cut(s) 64, 246, 511, 955, 994
BtsI GCAGTG 4 cut(s) 31, 33, 360, 1668
BtsIMutI CAGTG 7 cut(s) 31, 33, 360, 904, 1053, 1230, 1668
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 253
CseI GACGC 1 cut(s) 1157
Csp6I GTAC 4 cut(s) 942, 1180, 1255, 1670
CspCI CAANNNNNGTGG 2 cut(s) 1408, 1443
CviAII CATG 8 cut(s) 143, 392, 451, 529, 557, 596, 1215, 1313
CviQI GTAC 4 cut(s) 942, 1180, 1255, 1670
DdeI CTNAG 6 cut(s) 16, 368, 383, 545, 1279, 1300
DpnI GATC 4 cut(s) 135, 189, 1317, 1655
DpnII GATC 4 cut(s) 133, 187, 1315, 1653
DraI TTTAAA 1 cut(s) 751
EaeI YGGCCR 1 cut(s) 1328
Eco105I TACGTA 1 cut(s) 1254
Eco130I CCWWGG 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 272
Eco32I GATATC 1 cut(s) 1221
Eco57I CTGAAG 3 cut(s) 98, 787, 1046
EcoRV GATATC 1 cut(s) 1221
EcoT14I CCWWGG 1 cut(s) 409
EcoT22I ATGCAT 2 cut(s) 601, 1216
ErhI CCWWGG 1 cut(s) 409
Esp3I CGTCTC 1 cut(s) 1608
FaeI CATG 8 cut(s) 146, 395, 454, 532, 560, 599, 1218, 1316
FalI AAGNNNNNCTT 4 cut(s) 282, 314, 785, 817
FaqI GGGAC 1 cut(s) 279
FatI CATG 8 cut(s) 142, 391, 450, 528, 556, 595, 1214, 1312
FauNDI CATATG 1 cut(s) 676
FblI GTMKAC 3 cut(s) 5, 153, 660
Fnu4HI GCNGC 3 cut(s) 39, 1566, 1569
FokI GGATG 5 cut(s) 71, 233, 518, 962, 1001
Fsp4HI GCNGC 3 cut(s) 39, 1566, 1569
FspBI CTAG 6 cut(s) 218, 642, 710, 876, 1382, 1658
GluI GCNGC 3 cut(s) 39, 1566, 1569
HaeIII GGCC 1 cut(s) 1330
HapII CCGG 3 cut(s) 1230, 1631, 1651
HgaI GACGC 1 cut(s) 1157
Hin1I GRCGYC 1 cut(s) 1168
Hin1II CATG 8 cut(s) 146, 395, 454, 532, 560, 599, 1218, 1316
HincII GTYRAC 1 cut(s) 1152
HindII GTYRAC 1 cut(s) 1152
HindIII AAGCTT 3 cut(s) 370, 468, 1122
HinfI GANTC 6 cut(s) 212, 306, 316, 1267, 1306, 1448
HpaI GTTAAC 1 cut(s) 1152
HpaII CCGG 3 cut(s) 1230, 1631, 1651
HphI GGTGA 4 cut(s) 347, 514, 1301, 1403
Hpy166II GTNNAC 6 cut(s) 6, 154, 661, 1099, 1152, 1182
Hpy188I TCNGA 6 cut(s) 192, 386, 856, 1015, 1282, 1441
Hpy188III TCNNGA 5 cut(s) 56, 143, 310, 320, 566
Hpy8I GTNNAC 6 cut(s) 6, 154, 661, 1099, 1152, 1182
HpyAV CCTTC 5 cut(s) 482, 766, 811, 1078, 1366
HpyCH4III ACNGT 2 cut(s) 665, 1057
HpyCH4IV ACGT 2 cut(s) 1253, 1423
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 1532, 1589
HpyF3I CTNAG 6 cut(s) 16, 368, 383, 545, 1279, 1300
HpySE526I ACGT 2 cut(s) 1253, 1423
Hsp92I GRCGYC 1 cut(s) 1168
Hsp92II CATG 8 cut(s) 146, 395, 454, 532, 560, 599, 1218, 1316
KspAI GTTAAC 1 cut(s) 1152
Kzo9I GATC 4 cut(s) 133, 187, 1315, 1653
LmnI GCTCC 2 cut(s) 384, 1087
LpnPI CCDG 9 cut(s) 41, 295, 671, 1034, 1127, 1243, 1426, 1644, 1664
Lsp1109I GCAGC 3 cut(s) 25, 1577, 1580
LweI GCATC 4 cut(s) 196, 597, 862, 1425
MaeI CTAG 6 cut(s) 218, 642, 710, 876, 1382, 1658
MaeII ACGT 2 cut(s) 1253, 1423
MaeIII GTNAC 7 cut(s) 29, 120, 213, 413, 559, 1169, 1363
MalI GATC 4 cut(s) 135, 189, 1317, 1655
MboI GATC 4 cut(s) 133, 187, 1315, 1653
MboII GAAGA 9 cut(s) 104, 158, 325, 344, 350, 1097, 1504, 1507, 1530
MflI RGATCY 2 cut(s) 187, 1653
MhlI GDGCHC 2 cut(s) 904, 1630
MlyI GAGTC 2 cut(s) 221, 315
MmeI TCCRAC 1 cut(s) 1469
Mph1103I ATGCAT 2 cut(s) 601, 1216
MseI TTAA 6 cut(s) 63, 420, 591, 750, 1151, 1293
MslI CAYNNNNRTG 3 cut(s) 57, 527, 1294
MspA1I CMGCKG 1 cut(s) 1024
MspI CCGG 3 cut(s) 1230, 1631, 1651
MspR9I CCNGG 2 cut(s) 1231, 1631
Mva1269I GAATGC 3 cut(s) 518, 630, 1000
MwoI GCNNNNNNNGC 3 cut(s) 21, 1532, 1589
NciI CCSGG 2 cut(s) 1231, 1631
NdeI CATATG 1 cut(s) 676
NdeII GATC 4 cut(s) 133, 187, 1315, 1653
NlaIII CATG 8 cut(s) 146, 395, 454, 532, 560, 599, 1218, 1316
NlaIV GGNNCC 4 cut(s) 380, 1525, 1627, 1655
NmuCI GTSAC 3 cut(s) 29, 213, 1169
NsiI ATGCAT 2 cut(s) 601, 1216
NspI RCATGY 1 cut(s) 560
NspV TTCGAA 1 cut(s) 1370
PagI TCATGA 1 cut(s) 142
PctI GAATGC 3 cut(s) 518, 630, 1000
PfeI GAWTC 4 cut(s) 316, 1267, 1306, 1448
PflMI CCANNNNNTGG 1 cut(s) 1215
PkrI GCNGC 3 cut(s) 40, 1567, 1570
PleI GAGTC 2 cut(s) 220, 314
PpsI GAGTC 2 cut(s) 220, 314
Ppu21I YACGTR 1 cut(s) 1254
PspN4I GGNNCC 4 cut(s) 380, 1525, 1627, 1655
PsuI RGATCY 2 cut(s) 187, 1653
PvuII CAGCTG 1 cut(s) 1024
RsaI GTAC 4 cut(s) 943, 1181, 1256, 1671
RsaNI GTAC 4 cut(s) 942, 1180, 1255, 1670
RseI CAYNNNNRTG 3 cut(s) 57, 527, 1294
SaqAI TTAA 6 cut(s) 63, 420, 591, 750, 1151, 1293
SatI GCNGC 3 cut(s) 39, 1566, 1569
Sau3AI GATC 4 cut(s) 133, 187, 1315, 1653
SchI GAGTC 2 cut(s) 221, 315
ScrFI CCNGG 2 cut(s) 1231, 1631
SduI GDGCHC 2 cut(s) 904, 1630
SfaNI GCATC 4 cut(s) 196, 597, 862, 1425
SfuI TTCGAA 1 cut(s) 1370
SmiMI CAYNNNNRTG 3 cut(s) 57, 527, 1294
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
SnaBI TACGTA 1 cut(s) 1254
SspI AATATT 1 cut(s) 1518
SspMI CTAG 6 cut(s) 218, 642, 710, 876, 1382, 1658
StyD4I CCNGG 2 cut(s) 1229, 1629
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 2 cut(s) 665, 1057
TaiI ACGT 2 cut(s) 1256, 1426
TaqI TCGA 3 cut(s) 253, 1370, 1585
TatI WGTACW 2 cut(s) 1179, 1669
TfiI GAWTC 4 cut(s) 316, 1267, 1306, 1448
Tru1I TTAA 6 cut(s) 63, 420, 591, 750, 1151, 1293
Tru9I TTAA 6 cut(s) 63, 420, 591, 750, 1151, 1293
TscAI CASTG 7 cut(s) 31, 40, 367, 904, 1060, 1230, 1668
TseFI GTSAC 3 cut(s) 29, 213, 1169
TseI GCWGC 3 cut(s) 38, 1565, 1568
Tsp45I GTSAC 3 cut(s) 29, 213, 1169
TspDTI ATGAA 9 cut(s) 159, 462, 480, 501, 966, 1077, 1089, 1299, 1514
TspGWI ACGGA 2 cut(s) 171, 1169
TspRI CASTG 7 cut(s) 31, 40, 367, 904, 1060, 1230, 1668
Van91I CCANNNNNTGG 1 cut(s) 1215
XapI RAATTY 4 cut(s) 233, 698, 1005, 1556
XceI RCATGY 1 cut(s) 560
XmiI GTMKAC 3 cut(s) 5, 153, 660
XspI CTAG 6 cut(s) 218, 642, 710, 876, 1382, 1658
Zsp2I ATGCAT 2 cut(s) 601, 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.