Rh3DG293600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000768
Physical Location & Seq
Reverse (-)
30473678 .. 30478192
4515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG293600.1

Sequence Viewer

Length: 1596 bp
ATGTCTACCCAATGCTTAGCGAGCAGCGGTAGCCCTGCTGCTCAAACTTCACATTTGGATGTTAAAAGATTGACAGCAAATTACAAGCCAAGTATTTGGAGTCATGATTTTCTTCAGTCTTTACAGATTGATGATCGTAATCATGAAGAAGTATACAAAGATAATAGGTGGAAGCTGATCGAGGAGAATCTGAAAAATATTATTGATGCAGAGTCACTAGAGACTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGCCAGTATAACAGAAGCCCTTGATAAAGTTTTAAAGAATCTTGACCAAATAACAGACAAGGATACTCCAAGTCTGCACCTCACTGCTCTCAACTTCCGACTCCTTAGACAGCATGGGTTTCAAGTCTCCCAAGATGTTTTCAAAATTTTCACGGACTGCGACGGCAACTTCAAGGATTACTTTTGCAAAGATGTCAAAGGAATGATGAGTCTGTGCGAAGCTTCATACCTTGGTATTGAAGGAGAAACCCTCTTGGATGAGGCCCTTGCATTCACCAGCATGCACCTAAAGAATCTCAGCAGATTGCATGTTACTCAGGGCAAAGGTGTATTAGAGCAAGTGAGTCATGCATTGGAGATGCCATTGCACCACAGAATGCAAAGACTAGAAGCTAGATGGTGGTGGAAGGATACGGGGTTAGCAAAGAAGTTGTCCTTCAGCAAAGACATACTGATAGAGTTGTTCTTTTGGTCAGTTGGTATAGCGTTTGAACCTCAACTCAGCAATCTTAGAAAAGATATAACTAAAATCGGTGCTCTAATAACGACAATCGATGATGTCTATGATCTTTATGGTACTTTGGATGAGCTAGAACTATTCACATATGTTGTTGAAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGATTTATGAAACTTTGAAGGAGCAAGGAGTAAACGTCCTTCCTTACGTGAGAAAAGCTTGGGTAGATATGTGCAAAGCTTGGTTAATGGAGGCAAAGTGGCGTCACAACAAGTACACACCTACATTTGAAGAATATCTTGCCAATGCATGGATATCAGCGTCCGGAGTGGTCATTCTAGTCCACACCTACTTTCTACTGAATCAAAATATCTCAGATGAAGCACTTAAATGCTTAGAGAATCACCATGATCTCTTGCGTTGGTCGTCTCTTATTTTTCGGCTCTCAAATGATTTGGCTACTTCAAAGGTAGAACTAGAGAGAGGAGAAACTGCAACTTCAATATCCTGCATCAGATGTGATGGTGTTGTTTCTGATGAGGAATCTGCTCGCAAATATATTAGTAATTTGATTGAGAATAGTTGGAAGAAGATGAACAAAGATGGACTACTATTTGGTGCTAGTAGAGCTTCTTCTCCATTCACAAAGGAATTTGTAGCAGCAGCAACGAACCTTGCTCGAATTGCCCAATGCATTTACCAATATGGAGACGGGATTGGTGCCCCGGACGAAAGAGTAAAGAACTGGATCCTAGCAGTGATTGTACAACCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

531

Amino Acids

60.83

Weight (kDa)

5.41

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 211 1.3e-47 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 229 - 470 1e-82 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 269 - 470 2.2e-56 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1538
AccB7I CCANNNNNTGG 1 cut(s) 1128
AccI GTMKAC 2 cut(s) 5, 153
AccIII TCCGGA 1 cut(s) 1142
AciI CCGC 1 cut(s) 27
AclWI GGATC 2 cut(s) 1561, 1574
AcsI RAATTY 3 cut(s) 423, 918, 1469
AcuI CTGAAG 3 cut(s) 98, 700, 959
AcyI GRCGYC 1 cut(s) 1081
AfaI GTAC 3 cut(s) 856, 1094, 1584
AfiI CCNNNNNNNGG 2 cut(s) 277, 1128
AluBI AGCT 9 cut(s) 175, 500, 671, 868, 937, 943, 1037, 1058, 1448
AluI AGCT 9 cut(s) 175, 500, 671, 868, 937, 943, 1037, 1058, 1448
Alw21I GWGCWC 1 cut(s) 817
Alw26I GTCTC 4 cut(s) 215, 409, 1251, 1521
AlwI GGATC 2 cut(s) 1561, 1574
Aor13HI TCCGGA 1 cut(s) 1142
AoxI GGCC 2 cut(s) 279, 540
ApeKI GCWGC 4 cut(s) 24, 38, 1478, 1481
ApoI RAATTY 3 cut(s) 423, 918, 1469
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
AspS9I GGNCC 1 cut(s) 541
AsuC2I CCSGG 1 cut(s) 1544
AsuHPI GGTGA 2 cut(s) 544, 1214
BaeGI GKGCMC 1 cut(s) 1543
BamHI GGATCC 1 cut(s) 1566
BanI GGYRCC 1 cut(s) 1538
BarI GAAGNNNNNNTAC 4 cut(s) 1002, 1034, 1435, 1467
Bbv12I GWGCWC 1 cut(s) 817
BbvI GCAGC 4 cut(s) 25, 36, 1490, 1493
BccI CCATC 4 cut(s) 669, 891, 1334, 1415
BceAI ACGGC 1 cut(s) 457
BciVI GTATCC 2 cut(s) 334, 682
BcnI CCSGG 1 cut(s) 1544
BcoDI GTCTC 4 cut(s) 215, 409, 1251, 1521
BfaI CTAG 8 cut(s) 218, 665, 672, 869, 1157, 1295, 1440, 1571
BfuI GTATCC 2 cut(s) 334, 682
BisI GCNGC 4 cut(s) 25, 39, 1479, 1482
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 4 cut(s) 26, 40, 1480, 1483
Bme1390I CCNGG 1 cut(s) 1544
BmgT120I GGNCC 1 cut(s) 541
BmiI GGNNCC 2 cut(s) 1540, 1568
BmrFI CCNGG 1 cut(s) 1544
BmsI GCATC 3 cut(s) 196, 627, 1338
BplI GAGNNNNNCTC 2 cut(s) 513, 545
Bpu1102I GCTNAGC 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 1544
Bsa29I ATCGAT 1 cut(s) 831
BsaAI YACGTR 1 cut(s) 1027
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 1081
BsaJI CCNNGG 2 cut(s) 508, 1542
BsaWI WCCGGW 1 cut(s) 1142
BsaXI ACNNNNNCTCC 4 cut(s) 999, 1029, 1061, 1091
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 1128
Bse1I ACTGG 2 cut(s) 282, 1568
Bse3DI GCAATG 1 cut(s) 641
Bse8I GATNNNNATC 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 1142
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 2 cut(s) 508, 1542
BseGI GGATG 5 cut(s) 64, 246, 541, 868, 907
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 277, 1128
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 4 cut(s) 589, 608, 793, 1206
BseNI ACTGG 2 cut(s) 282, 1568
BseRI GAGGAG 2 cut(s) 197, 1317
BseSI GKGCMC 1 cut(s) 1543
BseXI GCAGC 4 cut(s) 25, 36, 1490, 1493
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 2 cut(s) 281, 542
BshNI GGYRCC 1 cut(s) 1538
BshVI ATCGAT 1 cut(s) 831
BsiHKAI GWGCWC 1 cut(s) 817
BsiSI CCGG 2 cut(s) 1143, 1544
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 277, 1128
BsmAI GTCTC 4 cut(s) 215, 409, 1251, 1521
BsmBI CGTCTC 2 cut(s) 1251, 1521
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 3 cut(s) 548, 660, 913
BsnI GGCC 2 cut(s) 281, 542
Bsp1286I GDGCHC 2 cut(s) 817, 1543
Bsp13I TCCGGA 1 cut(s) 1142
Bsp1407I TGTACA 1 cut(s) 1582
Bsp143I GATC 5 cut(s) 133, 177, 844, 1228, 1566
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 281, 542
BspCNI CTCAG 4 cut(s) 588, 607, 792, 1205
BspDI ATCGAT 1 cut(s) 831
BspEI TCCGGA 1 cut(s) 1142
BspHI TCATGA 2 cut(s) 103, 142
BspLI GGNNCC 2 cut(s) 1540, 1568
BspPI GGATC 2 cut(s) 1561, 1574
BspT107I GGYRCC 1 cut(s) 1538
BsrDI GCAATG 1 cut(s) 641
BsrGI TGTACA 1 cut(s) 1582
BsrI ACTGG 2 cut(s) 282, 1568
BssECI CCNNGG 2 cut(s) 508, 1542
BssMI GATC 5 cut(s) 133, 177, 844, 1228, 1566
BssNAI GTATAC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 1081
BssT1I CCWWGG 1 cut(s) 508
Bst1107I GTATAC 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 970
BstACI GRCGYC 1 cut(s) 1081
BstAUI TGTACA 1 cut(s) 1582
BstBAI YACGTR 1 cut(s) 1027
BstC8I GCNNGC 3 cut(s) 22, 560, 1369
BstDEI CTNAG 8 cut(s) 16, 383, 575, 594, 779, 788, 1192, 1213
BstF5I GGATG 5 cut(s) 64, 246, 541, 868, 907
BstKTI GATC 5 cut(s) 136, 180, 847, 1231, 1569
BstMAI GTCTC 4 cut(s) 215, 409, 1251, 1521
BstMBI GATC 5 cut(s) 133, 177, 844, 1228, 1566
BstMWI GCNNNNNNNGC 4 cut(s) 21, 30, 1445, 1502
BstNSI RCATGY 2 cut(s) 562, 590
BstSCI CCNGG 1 cut(s) 1542
BstSLI GKGCMC 1 cut(s) 1543
BstV1I GCAGC 4 cut(s) 25, 36, 1490, 1493
BstX2I RGATCY 1 cut(s) 1566
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 1 cut(s) 1566
BstZ17I GTATAC 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 831
BsuI GTATCC 2 cut(s) 334, 682
BsuRI GGCC 2 cut(s) 281, 542
BsuTUI ATCGAT 1 cut(s) 831
BtsCI GGATG 5 cut(s) 64, 246, 541, 868, 907
BtsI GCAGTG 2 cut(s) 360, 1581
BtsIMutI CAGTG 3 cut(s) 360, 966, 1581
Cac8I GCNNGC 3 cut(s) 22, 560, 1369
CciI TCATGA 2 cut(s) 103, 142
Cfr13I GGNCC 1 cut(s) 541
ClaI ATCGAT 1 cut(s) 831
CseI GACGC 2 cut(s) 1070, 1128
Csp6I GTAC 3 cut(s) 855, 1093, 1583
CviAII CATG 8 cut(s) 104, 143, 392, 559, 587, 626, 1128, 1226
CviQI GTAC 3 cut(s) 855, 1093, 1583
DdeI CTNAG 8 cut(s) 16, 383, 575, 594, 779, 788, 1192, 1213
DpnI GATC 5 cut(s) 135, 179, 846, 1230, 1568
DpnII GATC 5 cut(s) 133, 177, 844, 1228, 1566
DraI TTTAAA 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 508
Eco32I GATATC 1 cut(s) 1134
Eco57I CTGAAG 3 cut(s) 98, 700, 959
EcoO109I RGGNCCY 1 cut(s) 541
EcoRV GATATC 1 cut(s) 1134
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 3 cut(s) 631, 1129, 1514
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 2 cut(s) 1251, 1521
FaeI CATG 8 cut(s) 107, 146, 395, 562, 590, 629, 1131, 1229
FalI AAGNNNNNCTT 6 cut(s) 443, 475, 698, 730, 1101, 1133
FaqI GGGAC 1 cut(s) 279
FatI CATG 8 cut(s) 103, 142, 391, 558, 586, 625, 1127, 1225
FauNDI CATATG 1 cut(s) 883
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 4 cut(s) 25, 39, 1479, 1482
FokI GGATG 5 cut(s) 71, 233, 548, 875, 914
Fsp4HI GCNGC 4 cut(s) 25, 39, 1479, 1482
FspBI CTAG 8 cut(s) 218, 665, 672, 869, 1157, 1295, 1440, 1571
GluI GCNGC 4 cut(s) 25, 39, 1479, 1482
HaeIII GGCC 2 cut(s) 281, 542
HapII CCGG 2 cut(s) 1143, 1544
HgaI GACGC 2 cut(s) 1070, 1128
Hin1I GRCGYC 1 cut(s) 1081
Hin1II CATG 8 cut(s) 107, 146, 395, 562, 590, 629, 1131, 1229
HindIII AAGCTT 3 cut(s) 498, 1035, 1056
HpaII CCGG 2 cut(s) 1143, 1544
HphI GGTGA 2 cut(s) 544, 1214
Hpy166II GTNNAC 5 cut(s) 6, 154, 1012, 1095, 1162
Hpy188I TCNGA 6 cut(s) 192, 377, 928, 1195, 1334, 1354
Hpy188III TCNNGA 4 cut(s) 104, 143, 320, 1143
Hpy8I GTNNAC 5 cut(s) 6, 154, 1012, 1095, 1162
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 5 cut(s) 512, 679, 724, 991, 1028
HpyCH4III ACNGT 1 cut(s) 970
HpyCH4IV ACGT 2 cut(s) 1014, 1026
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 30, 1445, 1502
HpyF3I CTNAG 8 cut(s) 16, 383, 575, 594, 779, 788, 1192, 1213
HpySE526I ACGT 2 cut(s) 1014, 1026
Hsp92I GRCGYC 1 cut(s) 1081
Hsp92II CATG 8 cut(s) 107, 146, 395, 562, 590, 629, 1131, 1229
Kpn2I TCCGGA 1 cut(s) 1142
Kzo9I GATC 5 cut(s) 133, 177, 844, 1228, 1566
LmnI GCTCC 1 cut(s) 1000
LpnPI CCDG 9 cut(s) 48, 295, 568, 581, 947, 1156, 1339, 1549, 1557
Lsp1109I GCAGC 4 cut(s) 25, 36, 1490, 1493
LweI GCATC 3 cut(s) 196, 627, 1338
MaeI CTAG 8 cut(s) 218, 665, 672, 869, 1157, 1295, 1440, 1571
MaeII ACGT 2 cut(s) 1014, 1026
MaeIII GTNAC 3 cut(s) 213, 589, 1082
MalI GATC 5 cut(s) 135, 179, 846, 1230, 1568
MboI GATC 5 cut(s) 133, 177, 844, 1228, 1566
MboII GAAGA 6 cut(s) 104, 158, 1121, 1417, 1420, 1443
MflI RGATCY 1 cut(s) 1566
MhlI GDGCHC 2 cut(s) 817, 1543
MluCI AATT 7 cut(s) 79, 233, 423, 918, 1384, 1469, 1500
MlyI GAGTC 5 cut(s) 109, 221, 372, 496, 631
MmeI TCCRAC 3 cut(s) 274, 400, 1382
MnlI CCTC 9 cut(s) 175, 271, 368, 532, 539, 783, 1063, 1295, 1351
Mph1103I ATGCAT 3 cut(s) 631, 1129, 1514
MroI TCCGGA 1 cut(s) 1142
MseI TTAA 5 cut(s) 63, 311, 1064, 1206, 1594
MslI CAYNNNNRTG 3 cut(s) 57, 557, 1207
MspA1I CMGCKG 2 cut(s) 27, 937
MspI CCGG 2 cut(s) 1143, 1544
MspR9I CCNGG 1 cut(s) 1544
Mva1269I GAATGC 3 cut(s) 548, 660, 913
MwoI GCNNNNNNNGC 4 cut(s) 21, 30, 1445, 1502
NciI CCSGG 1 cut(s) 1544
NdeI CATATG 1 cut(s) 883
NdeII GATC 5 cut(s) 133, 177, 844, 1228, 1566
NlaIII CATG 8 cut(s) 107, 146, 395, 562, 590, 629, 1131, 1229
NlaIV GGNNCC 2 cut(s) 1540, 1568
NmuCI GTSAC 2 cut(s) 213, 1082
NsiI ATGCAT 3 cut(s) 631, 1129, 1514
NspI RCATGY 2 cut(s) 562, 590
PaeI GCATGC 1 cut(s) 562
PagI TCATGA 2 cut(s) 103, 142
PctI GAATGC 3 cut(s) 548, 660, 913
PfeI GAWTC 7 cut(s) 187, 273, 316, 571, 1180, 1219, 1361
PflMI CCANNNNNTGG 1 cut(s) 1128
PkrI GCNGC 4 cut(s) 26, 40, 1480, 1483
PleI GAGTC 5 cut(s) 108, 220, 372, 495, 630
PpsI GAGTC 5 cut(s) 108, 220, 372, 495, 630
Ppu21I YACGTR 1 cut(s) 1027
PspN4I GGNNCC 2 cut(s) 1540, 1568
PspPI GGNCC 1 cut(s) 541
PsuI RGATCY 1 cut(s) 1566
PvuII CAGCTG 1 cut(s) 937
RsaI GTAC 3 cut(s) 856, 1094, 1584
RsaNI GTAC 3 cut(s) 855, 1093, 1583
RseI CAYNNNNRTG 3 cut(s) 57, 557, 1207
SaqAI TTAA 5 cut(s) 63, 311, 1064, 1206, 1594
SatI GCNGC 4 cut(s) 25, 39, 1479, 1482
Sau3AI GATC 5 cut(s) 133, 177, 844, 1228, 1566
Sau96I GGNCC 1 cut(s) 541
SchI GAGTC 5 cut(s) 109, 221, 372, 496, 631
ScrFI CCNGG 1 cut(s) 1544
SduI GDGCHC 2 cut(s) 817, 1543
SfaNI GCATC 3 cut(s) 196, 627, 1338
SmiMI CAYNNNNRTG 3 cut(s) 57, 557, 1207
SphI GCATGC 1 cut(s) 562
Sse9I AATT 7 cut(s) 79, 233, 423, 918, 1384, 1469, 1500
SsiI CCGC 1 cut(s) 27
SspI AATATT 1 cut(s) 199
SspMI CTAG 8 cut(s) 218, 665, 672, 869, 1157, 1295, 1440, 1571
StyD4I CCNGG 1 cut(s) 1542
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 970
TaiI ACGT 2 cut(s) 1017, 1029
TaqI TCGA 4 cut(s) 180, 276, 831, 1498
TasI AATT 7 cut(s) 79, 233, 423, 918, 1384, 1469, 1500
TatI WGTACW 2 cut(s) 1092, 1582
TfiI GAWTC 7 cut(s) 187, 273, 316, 571, 1180, 1219, 1361
Tru1I TTAA 5 cut(s) 63, 311, 1064, 1206, 1594
Tru9I TTAA 5 cut(s) 63, 311, 1064, 1206, 1594
TscAI CASTG 3 cut(s) 367, 973, 1581
TseFI GTSAC 2 cut(s) 213, 1082
TseI GCWGC 4 cut(s) 24, 38, 1478, 1481
Tsp45I GTSAC 2 cut(s) 213, 1082
TspDTI ATGAA 6 cut(s) 159, 492, 990, 1002, 1212, 1427
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 3 cut(s) 367, 973, 1581
Van91I CCANNNNNTGG 1 cut(s) 1128
XapI RAATTY 3 cut(s) 423, 918, 1469
XceI RCATGY 2 cut(s) 562, 590
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 8 cut(s) 218, 665, 672, 869, 1157, 1295, 1440, 1571
Zsp2I ATGCAT 3 cut(s) 631, 1129, 1514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.