Rh2DG572300

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000768
Physical Location & Seq
Reverse (-)
80265368 .. 80270016
4649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG572300.1

Sequence Viewer

Length: 957 bp
ATGTCTACCCAATGCTTAGCAAGCAGCGGTAGCACTGCTGCCCAAACTTCACATCTGGATGTTAAAAGATTGACAGCAAATTACAAGCCAAGTATTTGGAGTTGCGATTTTCTTCAATCGTTACAGATTGATGATCGTAATCATGAAGAAGTATACGGAGATAATAGGTGGAAGTTGATGGAGGAGGATTTGAAAAATATGATTGATGCAGAGTCACTAGAGACTACACTTGAATTGATTGATGACATCCAACGATTAGGTTCGGGACACCGATTCGAGGCCAGTATAAAAGAAACCCTTGATAGAGTTTTGAAGAATCTCGACCAAATAACAGACGAGGATACTCCAAGTCTTCACCTCACTGCTCTAAGCTTCAGGTTCCTCAGACATCATGGGTTTCAAGTCTCCCAAGATGTTTTCAAATTTTTCATGGATTGTGACGGCAACTTTAAGGATTGCCTTTGCAAAGATGTCAAAGGCATGCTAAGTCTGTATGAAGCTTCATTCCTTGGTATTGAAGGAGAACCCCTCTTGGATGAGGCTCTTGCATTCACTAGCATGCACCTAAAGAACCTCAGTAGATTGCATGTTACTCAAGACAAAGGTGTATTAGAGCAAGTAAGTCATGCATTGGAGATGCCATTGCACCATAGAATGCAAAGATTAGAAGCTAGATGGTATATTGAGGCATACAGTAAAAAGGCATATGCAAGTCAGGTGCTACTTGAATTTGCCAAGCTAGATTACAATGTGGTGCAACAAACATACCAAAGAGATTTTAAAGATATTTCAAGATGGGATGTGAATGCTGTGGAAATTCTTTCAGACTACCAGCTGAAGCTCTGTTTCCTTGCTCTCTATAACACTGTGAATGAAATGACTTATGAAACTTTGAAGGAGCAAGGAGTGAATGTTCTTCCTTACCTGACAAAAGCTTGGGTTGATAATCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

318

Amino Acids

36.77

Weight (kDa)

5.1

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 211 3.7e-48 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 263 - 315 6.3e-10 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 5, 153
AciI CCGC 1 cut(s) 27
AcsI RAATTY 3 cut(s) 422, 728, 816
AcuI CTGAAG 2 cut(s) 358, 857
AfiI CCNNNNNNNGG 1 cut(s) 277
AloI GAACNNNNNNTCC 2 cut(s) 897, 929
AluBI AGCT 7 cut(s) 372, 500, 671, 739, 835, 841, 935
AluI AGCT 7 cut(s) 372, 500, 671, 739, 835, 841, 935
Alw26I GTCTC 2 cut(s) 215, 409
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 24, 38
ApoI RAATTY 3 cut(s) 422, 728, 816
AsuHPI GGTGA 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 25, 36
BccI CCATC 3 cut(s) 172, 669, 789
BceAI ACGGC 1 cut(s) 457
BciVI GTATCC 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 215, 409
BfaI CTAG 4 cut(s) 218, 555, 672, 740
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 2 cut(s) 25, 39
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 2 cut(s) 26, 40
BmiI GGNNCC 1 cut(s) 380
BmsI GCATC 2 cut(s) 196, 627
BpiI GAAGAC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 513, 545
Bpu1102I GCTNAGC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 579
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 508
BsaXI ACNNNNNCTCC 2 cut(s) 897, 927
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 641
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 4 cut(s) 64, 246, 541, 805
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 2 cut(s) 397, 589
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 25, 36
BshFI GGCC 1 cut(s) 281
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 215, 409
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 3 cut(s) 548, 660, 811
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 133
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 2 cut(s) 396, 588
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 641
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 1 cut(s) 133
BssNAI GTATAC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 508
Bst1107I GTATAC 1 cut(s) 154
Bst4CI ACNGT 2 cut(s) 695, 868
BstC8I GCNNGC 3 cut(s) 22, 482, 560
BstDEI CTNAG 5 cut(s) 16, 368, 383, 485, 575
BstF5I GGATG 4 cut(s) 64, 246, 541, 805
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 2 cut(s) 215, 409
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 21, 30
BstNSI RCATGY 3 cut(s) 484, 562, 590
BstV1I GCAGC 2 cut(s) 25, 36
BstV2I GAAGAC 1 cut(s) 344
BstXI CCANNNNNNTGG 1 cut(s) 96
BstZ17I GTATAC 1 cut(s) 154
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 4 cut(s) 64, 246, 541, 805
BtsI GCAGTG 2 cut(s) 33, 360
BtsIMutI CAGTG 3 cut(s) 33, 360, 864
Cac8I GCNNGC 3 cut(s) 22, 482, 560
CciI TCATGA 1 cut(s) 142
CviAII CATG 7 cut(s) 143, 392, 430, 481, 559, 587, 626
DdeI CTNAG 5 cut(s) 16, 368, 383, 485, 575
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DraI TTTAAA 1 cut(s) 781
Eco130I CCWWGG 1 cut(s) 508
Eco57I CTGAAG 2 cut(s) 358, 857
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 7 cut(s) 146, 395, 433, 484, 562, 590, 629
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 279
FatI CATG 7 cut(s) 142, 391, 429, 480, 558, 586, 625
FauNDI CATATG 1 cut(s) 706
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 2 cut(s) 25, 39
FokI GGATG 4 cut(s) 71, 233, 548, 812
Fsp4HI GCNGC 2 cut(s) 25, 39
FspBI CTAG 4 cut(s) 218, 555, 672, 740
GluI GCNGC 2 cut(s) 25, 39
HaeIII GGCC 1 cut(s) 281
Hin1II CATG 7 cut(s) 146, 395, 433, 484, 562, 590, 629
HindIII AAGCTT 3 cut(s) 370, 498, 933
HinfI GANTC 3 cut(s) 212, 273, 316
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 6, 154
Hpy188I TCNGA 2 cut(s) 386, 826
Hpy188III TCNNGA 6 cut(s) 56, 143, 264, 320, 596, 792
Hpy8I GTNNAC 2 cut(s) 6, 154
HpyAV CCTTC 2 cut(s) 512, 889
HpyCH4III ACNGT 2 cut(s) 695, 868
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 30
HpyF3I CTNAG 5 cut(s) 16, 368, 383, 485, 575
Hsp92II CATG 7 cut(s) 146, 395, 433, 484, 562, 590, 629
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 898
LpnPI CCDG 6 cut(s) 41, 295, 361, 701, 845, 938
Lsp1109I GCAGC 2 cut(s) 25, 36
LweI GCATC 2 cut(s) 196, 627
MaeI CTAG 4 cut(s) 218, 555, 672, 740
MaeIII GTNAC 4 cut(s) 120, 213, 437, 589
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 5 cut(s) 104, 158, 325, 344, 908
MluCI AATT 5 cut(s) 79, 233, 422, 728, 816
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 274
Mph1103I ATGCAT 1 cut(s) 631
MseI TTAA 4 cut(s) 63, 450, 780, 955
MslI CAYNNNNRTG 2 cut(s) 57, 557
MspA1I CMGCKG 2 cut(s) 27, 835
Mva1269I GAATGC 3 cut(s) 548, 660, 811
MwoI GCNNNNNNNGC 2 cut(s) 21, 30
NdeI CATATG 1 cut(s) 706
NdeII GATC 1 cut(s) 133
NlaIII CATG 7 cut(s) 146, 395, 433, 484, 562, 590, 629
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 2 cut(s) 213, 437
NsiI ATGCAT 1 cut(s) 631
NspI RCATGY 3 cut(s) 484, 562, 590
PaeI GCATGC 2 cut(s) 484, 562
PagI TCATGA 1 cut(s) 142
PctI GAATGC 3 cut(s) 548, 660, 811
PfeI GAWTC 2 cut(s) 273, 316
PkrI GCNGC 2 cut(s) 26, 40
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 835
RseI CAYNNNNRTG 2 cut(s) 57, 557
SaqAI TTAA 4 cut(s) 63, 450, 780, 955
SatI GCNGC 2 cut(s) 25, 39
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 221
SfaNI GCATC 2 cut(s) 196, 627
SmiMI CAYNNNNRTG 2 cut(s) 57, 557
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
SphI GCATGC 2 cut(s) 484, 562
Sse9I AATT 5 cut(s) 79, 233, 422, 728, 816
SsiI CCGC 1 cut(s) 27
SspMI CTAG 4 cut(s) 218, 555, 672, 740
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 695, 868
TaqI TCGA 2 cut(s) 276, 321
TasI AATT 5 cut(s) 79, 233, 422, 728, 816
TfiI GAWTC 2 cut(s) 273, 316
Tru1I TTAA 4 cut(s) 63, 450, 780, 955
Tru9I TTAA 4 cut(s) 63, 450, 780, 955
TscAI CASTG 3 cut(s) 40, 367, 871
TseFI GTSAC 2 cut(s) 213, 437
TseI GCWGC 2 cut(s) 24, 38
Tsp45I GTSAC 2 cut(s) 213, 437
TspDTI ATGAA 6 cut(s) 159, 418, 492, 510, 888, 900
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 3 cut(s) 40, 367, 871
XapI RAATTY 3 cut(s) 422, 728, 816
XceI RCATGY 3 cut(s) 484, 562, 590
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 4 cut(s) 218, 555, 672, 740
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.