Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006653.1

Orthogroup ID

OG0000768

Physical Location & Seq

Genomic Coordinates Reverse (-)

70817 .. 72735

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006653.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

atggactgcgacgacaacttcaaggattgcctttgcgaagatgtcaaaggaatgttgagtctatacgaagcttcattccttggtattgaaggagaaacactcttggaagaggctcttgcattcaccagcatgcacctaaagaacctcagcaaattgcatgttactcaaggcataggtgtattagagcaagtgagtcatgcattggagatgccattgcaccatagaatgcaaagactagaagctagatggtatattgaggcatacagtaaaaaggcagatgcaaatcaggtgctacttgaatttgccaagctagattacaatgtggtgcaacaaacataccaaagagatcttaaagacatttcaaggtggtggaaggacacagggttagcaaagaagttatccttcagcagagacagactgatggagttgttcttttggtcagttggtatagtgtttgaacctcaattcagcaatgttagaaaagggataactaaagtcagtgctctaataacgacaattgatgatgtttatgatgtttatggtgctttggatgaactagagctattcacatctgttgttgaaagatgggatgtgaatgctgtggagattctttcagactaccagctaaagctctgtttccttgctctctataacactgtgaatgaaatgacttatgaaactttgaaggaacaaggagtgaatgtccttccttacgtgagaaaagcttgggcagatatgtgcaaaacttggttgacggaggcaaagtggcgtcacaacaagtacacacctacatttgaagaatatcttgcgaatgcatggatatcagtgtccggggaggtcattctagttcatacctactttctactgaatcaaaatatcttagatgaagcacttaaatgcttagagaatcaccatgatctcttgcgttggccgtctcttatttttcggctctcaaatgatttggttacttcgaaggcagaactagagagaggtgaaactgcaacttcaatatcctgcatcaaacgtgatggtgttgtttctgatgaggaatctgctctcaaatatattagtaatttgattgagaatagttggaagaagatgaacaaagatggactactatttggtgctaatagagcttcttctccattcacaaaggaatttgtagcagcaacaatgaaccttgctcgaattgcccaatgcatttaccaatatggagacgggattggtgccccggacaaaagagtagagaaccagatcctatcagtgattgtacaacccgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

427

Amino Acids

49.07

Weight (kDa)

5.24

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24210 AT3G25810 AT3G25820 AT3G25820 AT3G25820 AT3G25820 AT3G25830 AT4G16730 AT4G16730 AT4G16740 AT4G16740 AT4G16740 AT4G16740
fragaria_vesca	FvH4_6g43791 FvH4_6g43792 FvH4_6g43792 FvH4_6g43793 FvH4_6g43794 FvH4_6g43820 FvH4_6g44544 FvH4_6g45600
malus_domestica	MD08G1157700.v1.1 MD17G1090000.v1.1 MD17G1090100.v1.1 MD17G1090400.v1.1
pyrus_communis	pycom17g08710 pycom17g08720
rosa_chinensis	RchiOBHm_Chr2g0160561 RchiOBHm_Chr2g0160591 RchiOBHm_Chr3g0484891 RchiOBHm_Chr6g0252721
rosa_laevigata	RLG00000015069 RLG00000021224 RLG00000023189 RLG00000023190 RLG00000023196 RLG00000023197
rosa_multiflora	Rmu_co8462617.1_g000001 Rmu_sc0000674.1_g000010 Rmu_sc0001689.1_g000022 Rmu_sc0003707.1_g000003 Rmu_sc0005946.1_g000007 Rmu_sc0006653.1_g000017 Rmu_sc0012232.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397380
rosa_rugosa	Rorug02G0483700 Rorug02G0483800 Rorug02G0483900 Rorug02G0484000 Rorug02G0484000 Rorug03G0214100
rosa_samantha	Rh2AG549100 Rh2BG562800 Rh2BG563300 Rh2CG533400 Rh2DG572200 Rh2DG572300 Rh3AG264500 Rh3BG300000 Rh3CG297600 Rh3DG293400 Rh3DG293600 Rh6AG054500 Rh6BG048300 Rh6DG042600
rosa_wichuraiana	Rw2G045460 Rw2G045470 Rw3G023600 Rw3G023610 Rw6G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1226
AclWI	GGATC	1 cut(s)	1249
AcoI	YGGCCR	1 cut(s)	929
AcsI	RAATTY	2 cut(s)	299, 1157
AcuI	CTGAAG	1 cut(s)	388
AcyI	GRCGYC	1 cut(s)	769
AfaI	GTAC	2 cut(s)	782, 1272
AgsI	TTSAA	9 cut(s)	22, 89, 299, 363, 458, 581, 685, 797, 1008
AluBI	AGCT	8 cut(s)	71, 242, 310, 562, 625, 631, 725, 1136
AluI	AGCT	8 cut(s)	71, 242, 310, 562, 625, 631, 725, 1136
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	3 cut(s)	405, 939, 1209
AlwI	GGATC	1 cut(s)	1249
AoxI	GGCC	1 cut(s)	929
ApeKI	GCWGC	1 cut(s)	1166
ApoI	RAATTY	2 cut(s)	299, 1157
AsuC2I	CCSGG	2 cut(s)	832, 1232
AsuHPI	GGTGA	3 cut(s)	115, 902, 1004
AsuII	TTCGAA	1 cut(s)	971
BaeGI	GKGCMC	1 cut(s)	1231
BanI	GGYRCC	1 cut(s)	1226
Bbv12I	GWGCWC	1 cut(s)	505
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	1178
BccI	CCATC	5 cut(s)	240, 415, 579, 1022, 1103
BceAI	ACGGC	1 cut(s)	916
BcnI	CCSGG	2 cut(s)	832, 1232
BcoDI	GTCTC	3 cut(s)	405, 939, 1209
BfaI	CTAG	6 cut(s)	236, 243, 311, 557, 845, 983
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	1 cut(s)	1167
BlsI	GCNGC	1 cut(s)	1168
Bme1390I	CCNGG	2 cut(s)	832, 1232
BmiI	GGNNCC	1 cut(s)	1228
BmrFI	CCNGG	2 cut(s)	832, 1232
BmsI	GCATC	3 cut(s)	198, 268, 1026
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
Bpu10I	CCTNAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	971
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	2 cut(s)	832, 1232
BsaAI	YACGTR	1 cut(s)	715
BsaBI	GATNNNNATC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	769
BsaJI	CCNNGG	3 cut(s)	79, 831, 1230
BsaXI	ACNNNNNCTCC	4 cut(s)	687, 717, 749, 779
Bse3DI	GCAATG	2 cut(s)	212, 478
Bse8I	GATNNNNATC	1 cut(s)	282
BseDI	CCNNGG	3 cut(s)	79, 831, 1230
BseGI	GGATG	2 cut(s)	556, 595
BseJI	GATNNNNATC	1 cut(s)	282
BseMI	GCAATG	2 cut(s)	212, 478
BseMII	CTCAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	1231
BseXI	GCAGC	1 cut(s)	1178
BshFI	GGCC	1 cut(s)	931
BshNI	GGYRCC	1 cut(s)	1226
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	831, 1232
BsmAI	GTCTC	3 cut(s)	405, 939, 1209
BsmBI	CGTCTC	2 cut(s)	939, 1209
BsmI	GAATGC	4 cut(s)	119, 231, 601, 817
BsnI	GGCC	1 cut(s)	931
Bsp119I	TTCGAA	1 cut(s)	971
Bsp1286I	GDGCHC	2 cut(s)	505, 1231
Bsp1407I	TGTACA	1 cut(s)	1270
Bsp143I	GATC	3 cut(s)	346, 916, 1254
BspANI	GGCC	1 cut(s)	931
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	1228
BspPI	GGATC	1 cut(s)	1249
BspT104I	TTCGAA	1 cut(s)	971
BspT107I	GGYRCC	1 cut(s)	1226
BsrDI	GCAATG	2 cut(s)	212, 478
BsrGI	TGTACA	1 cut(s)	1270
BssECI	CCNNGG	3 cut(s)	79, 831, 1230
BssMI	GATC	3 cut(s)	346, 916, 1254
BssNI	GRCGYC	1 cut(s)	769
BssT1I	CCWWGG	1 cut(s)	79
Bst4CI	ACNGT	2 cut(s)	266, 658
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	769
BstAUI	TGTACA	1 cut(s)	1270
BstBAI	YACGTR	1 cut(s)	715
BstBI	TTCGAA	1 cut(s)	971
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	146, 880, 901
BstF5I	GGATG	2 cut(s)	556, 595
BstKTI	GATC	3 cut(s)	349, 919, 1257
BstMAI	GTCTC	3 cut(s)	405, 939, 1209
BstMBI	GATC	3 cut(s)	346, 916, 1254
BstMWI	GCNNNNNNNGC	2 cut(s)	1133, 1190
BstNSI	RCATGY	2 cut(s)	133, 161
BstSCI	CCNGG	2 cut(s)	830, 1230
BstSLI	GKGCMC	1 cut(s)	1231
BstV1I	GCAGC	1 cut(s)	1178
BstX2I	RGATCY	2 cut(s)	346, 1254
BstYI	RGATCY	2 cut(s)	346, 1254
BsuRI	GGCC	1 cut(s)	931
BtsCI	GGATG	2 cut(s)	556, 595
BtsIMutI	CAGTG	4 cut(s)	505, 654, 831, 1269
Cac8I	GCNNGC	1 cut(s)	131
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	2 cut(s)	781, 1271
CviAII	CATG	5 cut(s)	130, 158, 197, 816, 914
CviQI	GTAC	2 cut(s)	781, 1271
DdeI	CTNAG	3 cut(s)	146, 880, 901
DpnI	GATC	3 cut(s)	348, 918, 1256
DpnII	GATC	3 cut(s)	346, 916, 1254
EaeI	YGGCCR	1 cut(s)	929
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	822
Eco57I	CTGAAG	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	822
EcoT14I	CCWWGG	1 cut(s)	79
EcoT22I	ATGCAT	3 cut(s)	202, 817, 1202
ErhI	CCWWGG	1 cut(s)	79
Esp3I	CGTCTC	2 cut(s)	939, 1209
FaeI	CATG	5 cut(s)	133, 161, 200, 819, 917
FalI	AAGNNNNNCTT	6 cut(s)	99, 131, 386, 418, 789, 821
FatI	CATG	5 cut(s)	129, 157, 196, 815, 913
Fnu4HI	GCNGC	1 cut(s)	1167
FokI	GGATG	2 cut(s)	563, 602
Fsp4HI	GCNGC	1 cut(s)	1167
FspBI	CTAG	6 cut(s)	236, 243, 311, 557, 845, 983
GluI	GCNGC	1 cut(s)	1167
HaeIII	GGCC	1 cut(s)	931
HapII	CCGG	2 cut(s)	831, 1232
HgaI	GACGC	1 cut(s)	758
Hin1I	GRCGYC	1 cut(s)	769
Hin1II	CATG	5 cut(s)	133, 161, 200, 819, 917
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HindIII	AAGCTT	2 cut(s)	69, 723
HinfI	GANTC	6 cut(s)	58, 193, 607, 868, 907, 1049
HpaII	CCGG	2 cut(s)	831, 1232
HphI	GGTGA	3 cut(s)	115, 902, 1004
Hpy166II	GTNNAC	2 cut(s)	753, 783
Hpy188I	TCNGA	2 cut(s)	616, 1042
Hpy8I	GTNNAC	2 cut(s)	753, 783
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	6 cut(s)	83, 367, 412, 679, 716, 967
HpyCH4III	ACNGT	2 cut(s)	266, 658
HpyCH4IV	ACGT	2 cut(s)	714, 1024
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1133, 1190
HpyF3I	CTNAG	3 cut(s)	146, 880, 901
HpySE526I	ACGT	2 cut(s)	714, 1024
Hsp92I	GRCGYC	1 cut(s)	769
Hsp92II	CATG	5 cut(s)	133, 161, 200, 819, 917
Kzo9I	GATC	3 cut(s)	346, 916, 1254
LpnPI	CCDG	8 cut(s)	139, 272, 366, 635, 844, 1027, 1245, 1265
Lsp1109I	GCAGC	1 cut(s)	1178
LweI	GCATC	3 cut(s)	198, 268, 1026
MaeI	CTAG	6 cut(s)	236, 243, 311, 557, 845, 983
MaeII	ACGT	2 cut(s)	714, 1024
MaeIII	GTNAC	3 cut(s)	160, 770, 964
MalI	GATC	3 cut(s)	348, 918, 1256
MboI	GATC	3 cut(s)	346, 916, 1254
MboII	GAAGA	6 cut(s)	50, 119, 809, 1105, 1108, 1131
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	2 cut(s)	346, 1254
MhlI	GDGCHC	2 cut(s)	505, 1231
MluCI	AATT	7 cut(s)	152, 299, 464, 516, 1072, 1157, 1188
MlyI	GAGTC	2 cut(s)	67, 202
MmeI	TCCRAC	1 cut(s)	1070
MnlI	CCTC	8 cut(s)	103, 155, 250, 471, 751, 829, 983, 1039
Mph1103I	ATGCAT	3 cut(s)	202, 817, 1202
MseI	TTAA	2 cut(s)	351, 894
MslI	CAYNNNNRTG	2 cut(s)	128, 895
MspI	CCGG	2 cut(s)	831, 1232
MspR9I	CCNGG	2 cut(s)	832, 1232
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	4 cut(s)	119, 231, 601, 817
MwoI	GCNNNNNNNGC	2 cut(s)	1133, 1190
NciI	CCSGG	2 cut(s)	832, 1232
NdeII	GATC	3 cut(s)	346, 916, 1254
NlaIII	CATG	5 cut(s)	133, 161, 200, 819, 917
NlaIV	GGNNCC	1 cut(s)	1228
NmuCI	GTSAC	1 cut(s)	770
NsiI	ATGCAT	3 cut(s)	202, 817, 1202
NspI	RCATGY	2 cut(s)	133, 161
NspV	TTCGAA	1 cut(s)	971
PaeI	GCATGC	1 cut(s)	133
PctI	GAATGC	4 cut(s)	119, 231, 601, 817
PfeI	GAWTC	4 cut(s)	607, 868, 907, 1049
PkrI	GCNGC	1 cut(s)	1168
PleI	GAGTC	2 cut(s)	66, 201
PpsI	GAGTC	2 cut(s)	66, 201
Ppu21I	YACGTR	1 cut(s)	715
PspN4I	GGNNCC	1 cut(s)	1228
PsuI	RGATCY	2 cut(s)	346, 1254
RsaI	GTAC	2 cut(s)	782, 1272
RsaNI	GTAC	2 cut(s)	781, 1271
RseI	CAYNNNNRTG	2 cut(s)	128, 895
SaqAI	TTAA	2 cut(s)	351, 894
SatI	GCNGC	1 cut(s)	1167
Sau3AI	GATC	3 cut(s)	346, 916, 1254
SchI	GAGTC	2 cut(s)	67, 202
ScrFI	CCNGG	2 cut(s)	832, 1232
SduI	GDGCHC	2 cut(s)	505, 1231
SfaNI	GCATC	3 cut(s)	198, 268, 1026
SfuI	TTCGAA	1 cut(s)	971
SmiMI	CAYNNNNRTG	2 cut(s)	128, 895
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	7 cut(s)	152, 299, 464, 516, 1072, 1157, 1188
SspMI	CTAG	6 cut(s)	236, 243, 311, 557, 845, 983
StyD4I	CCNGG	2 cut(s)	830, 1230
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	266, 658
TaiI	ACGT	2 cut(s)	717, 1027
TaqI	TCGA	2 cut(s)	971, 1186
TasI	AATT	7 cut(s)	152, 299, 464, 516, 1072, 1157, 1188
TatI	WGTACW	2 cut(s)	780, 1270
TfiI	GAWTC	4 cut(s)	607, 868, 907, 1049
Tru1I	TTAA	2 cut(s)	351, 894
Tru9I	TTAA	2 cut(s)	351, 894
TscAI	CASTG	4 cut(s)	505, 661, 831, 1269
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	1 cut(s)	1166
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	8 cut(s)	63, 567, 678, 690, 839, 900, 1115, 1190
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	4 cut(s)	505, 661, 831, 1269
XapI	RAATTY	2 cut(s)	299, 1157
XceI	RCATGY	2 cut(s)	133, 161
XspI	CTAG	6 cut(s)	236, 243, 311, 557, 845, 983
Zsp2I	ATGCAT	3 cut(s)	202, 817, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.